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Draft genome sequences of Pseudomonas chengduensis strain BW1 and Sphingobium sp. strain MK2 isolated from oil sands process-affected water.
IF 0.7
Microbiology Resource Announcements Pub Date : 2024-12-19 DOI: 10.1128/mra.00677-24
Philemon Chinemezu Anuforo, Birgit Würz, Lukas Y Wick, René Kallies
{"title":"Draft genome sequences of <i>Pseudomonas chengduensis</i> strain BW1 and <i>Sphingobium</i> sp. strain MK2 isolated from oil sands process-affected water.","authors":"Philemon Chinemezu Anuforo, Birgit Würz, Lukas Y Wick, René Kallies","doi":"10.1128/mra.00677-24","DOIUrl":"https://doi.org/10.1128/mra.00677-24","url":null,"abstract":"<p><p>Draft genomes of two phenanthrene-degrading bacterial isolates from oil sands process-affected water (OSPW) in Alberta, Canada were sequenced. Both isolates grew in close association on agar plates and were difficult to obtain axenically. They represent novel <i>Pseudomonas chengduensis</i> and <i>Sphingobium</i> sp. strains with genomes of 5.5 and 4.1 Mbases length, respectively.</p>","PeriodicalId":18654,"journal":{"name":"Microbiology Resource Announcements","volume":" ","pages":"e0067724"},"PeriodicalIF":0.7,"publicationDate":"2024-12-19","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142854880","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Antibiotic resistance genes profile of selected drinking water treatment plants in South Africa as impacted by different treatment stages.
IF 0.7
Microbiology Resource Announcements Pub Date : 2024-12-19 DOI: 10.1128/mra.00934-24
Chimdi Mang Kalu, Khuthadzo L Mudau, Lesoka Reneiloe Ntobeng, Vhahangwele Masindi, Memory Tekere
{"title":"Antibiotic resistance genes profile of selected drinking water treatment plants in South Africa as impacted by different treatment stages.","authors":"Chimdi Mang Kalu, Khuthadzo L Mudau, Lesoka Reneiloe Ntobeng, Vhahangwele Masindi, Memory Tekere","doi":"10.1128/mra.00934-24","DOIUrl":"https://doi.org/10.1128/mra.00934-24","url":null,"abstract":"<p><p>Water treatment plants treat raw water making it suitable for consumption. Treatment stages are linked to the quality status of the treatment. The classes of antibiotic resistance genes as impacted by treatment stages remain under explored. We report the classes of antibiotic resistance genes (ARGs) from shotgun metagenomes as influenced by treatment stages.</p>","PeriodicalId":18654,"journal":{"name":"Microbiology Resource Announcements","volume":" ","pages":"e0093424"},"PeriodicalIF":0.7,"publicationDate":"2024-12-19","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142854835","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
African swine fever virus biotype identification tool.
IF 0.7
Microbiology Resource Announcements Pub Date : 2024-12-19 DOI: 10.1128/mra.00530-24
Mark Dinhobl, Edward Spinard, Hillary Birtlery, Nicolas Tesler, Charles Masembe, Paolo Ribeca, Manuel V Borca, Douglas P Gladue
{"title":"African swine fever virus biotype identification tool.","authors":"Mark Dinhobl, Edward Spinard, Hillary Birtlery, Nicolas Tesler, Charles Masembe, Paolo Ribeca, Manuel V Borca, Douglas P Gladue","doi":"10.1128/mra.00530-24","DOIUrl":"https://doi.org/10.1128/mra.00530-24","url":null,"abstract":"<p><p>African swine fever virus biotyping is a recently described classification technique that is based on an isolate's encoded proteome. In short, proteomes are compared and grouped based on unsupervised machine learning. This tool analyzes African swine fever virus (ASFV) genomes and will report their closest matches along with their ASFV biotypes. Here, we describe a standalone implementation that can be freely downloaded and used.</p>","PeriodicalId":18654,"journal":{"name":"Microbiology Resource Announcements","volume":" ","pages":"e0053024"},"PeriodicalIF":0.7,"publicationDate":"2024-12-19","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142854871","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Complete genome sequence of Capnocytophaga strain ARDL2 from human blood infection.
IF 0.7
Microbiology Resource Announcements Pub Date : 2024-12-17 DOI: 10.1128/mra.00912-24
Alec Victorsen, Aidan Ellison, Jeffrey Kubiak, Patricia Ferrieri, Bharat Thyagarajan, Evann E Hilt
{"title":"Complete genome sequence of <i>Capnocytophaga</i> strain ARDL2 from human blood infection.","authors":"Alec Victorsen, Aidan Ellison, Jeffrey Kubiak, Patricia Ferrieri, Bharat Thyagarajan, Evann E Hilt","doi":"10.1128/mra.00912-24","DOIUrl":"https://doi.org/10.1128/mra.00912-24","url":null,"abstract":"<p><p>This paper describes the genome assembly of a <i>Capnocytophaga</i> strain ARDL2 isolated from a human blood infection. The genome assembly comprised one circular chromosome with the length of 2,439,195 bp with a G+C content of 34.81%.</p>","PeriodicalId":18654,"journal":{"name":"Microbiology Resource Announcements","volume":" ","pages":"e0091224"},"PeriodicalIF":0.7,"publicationDate":"2024-12-17","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142837806","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Draft genome of Talaromyces sp. UPCC 4333, from Senna alata flowers, displayed a remarkable diversity of potentially novel biosynthetic gene clusters.
IF 0.7
Microbiology Resource Announcements Pub Date : 2024-12-17 DOI: 10.1128/mra.01055-24
Rafael B Eugenio, Paul Christian T Gloria, Mary Ann Cielo V Relucio-San Diego
{"title":"Draft genome of <i>Talaromyces</i> sp. UPCC 4333, from <i>Senna alata</i> flowers, displayed a remarkable diversity of potentially novel biosynthetic gene clusters.","authors":"Rafael B Eugenio, Paul Christian T Gloria, Mary Ann Cielo V Relucio-San Diego","doi":"10.1128/mra.01055-24","DOIUrl":"https://doi.org/10.1128/mra.01055-24","url":null,"abstract":"<p><p>Here, we report the draft genome of <i>Talaromyces</i> sp. UPCC 4333, isolated from <i>Senna alata</i> flowers, with a size of 31.3 Mb and 92.9% BUSCO completeness. The genome contains at least 39 secondary metabolite biosynthetic gene clusters which merit further investigation in the future.</p>","PeriodicalId":18654,"journal":{"name":"Microbiology Resource Announcements","volume":" ","pages":"e0105524"},"PeriodicalIF":0.7,"publicationDate":"2024-12-17","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142837816","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Genome sequences of bacteriophages that infect Salmonella Typhi from Bangladesh.
IF 0.7
Microbiology Resource Announcements Pub Date : 2024-12-17 DOI: 10.1128/mra.00447-24
Shuborno Islam, Rathindranath Kabiraj, Himadree Sarkar, Preonath Chondrow Dev, Afroza Akter Tanni, Deb Purna Keya, Apurba Rajib Malakar, Arif Mohammad Tanmoy, Samir K Saha, Yogesh Hooda, Senjuti Saha
{"title":"Genome sequences of bacteriophages that infect <i>Salmonella</i> Typhi from Bangladesh.","authors":"Shuborno Islam, Rathindranath Kabiraj, Himadree Sarkar, Preonath Chondrow Dev, Afroza Akter Tanni, Deb Purna Keya, Apurba Rajib Malakar, Arif Mohammad Tanmoy, Samir K Saha, Yogesh Hooda, Senjuti Saha","doi":"10.1128/mra.00447-24","DOIUrl":"https://doi.org/10.1128/mra.00447-24","url":null,"abstract":"<p><p>This report presents near-complete genome sequences of 14 bacteriophages that infect <i>Salmonella</i> Typhi, identified through environmental surveillance in Bangladesh between August 2021 and June 2022. The bacteriophages, belonging to the genera <i>Kayfunavirus</i>, <i>Macdonaldcampvirus</i>, and <i>Teseptimavirus</i>, exhibit high degrees of sequence similarity and conserved genetic features with previously reported Typhi bacteriophages.</p>","PeriodicalId":18654,"journal":{"name":"Microbiology Resource Announcements","volume":" ","pages":"e0044724"},"PeriodicalIF":0.7,"publicationDate":"2024-12-17","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142837824","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Whole-genome sequence of non-rhizobial strain Tardiphaga sp. 709 isolated from the root nodule of Astragalus inopinatus Borris., growing on the Kamchatka Peninsula.
IF 0.7
Microbiology Resource Announcements Pub Date : 2024-12-17 DOI: 10.1128/mra.00923-24
Polina Guro, Irina Kuznetsova, Anna Sazanova, Andrey Belimov, Vera Safronova
{"title":"Whole-genome sequence of non-rhizobial strain <i>Tardiphaga</i> sp. 709 isolated from the root nodule of <i>Astragalus inopinatus</i> Borris., growing on the Kamchatka Peninsula.","authors":"Polina Guro, Irina Kuznetsova, Anna Sazanova, Andrey Belimov, Vera Safronova","doi":"10.1128/mra.00923-24","DOIUrl":"https://doi.org/10.1128/mra.00923-24","url":null,"abstract":"<p><p>We report the whole-genome sequence of the non-rhizobial endosymbiotic bacteria <i>Tardiphaga</i> sp. strain 709, which was isolated from the root nodule of <i>Astragalus inopinatus</i> Borris. on the Kamchatka Peninsula, Russia. The genome consists of one chromosome and one plasmid with a total length of 6,359,564 bp and 61.5% of GC content.</p>","PeriodicalId":18654,"journal":{"name":"Microbiology Resource Announcements","volume":" ","pages":"e0092324"},"PeriodicalIF":0.7,"publicationDate":"2024-12-17","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142837787","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Draft genome sequence and analysis of endophyte Bacillus amyloliquefaciens strain Can02R isolated from the roots of Chenopodium album L.
IF 0.7
Microbiology Resource Announcements Pub Date : 2024-12-17 DOI: 10.1128/mra.01075-24
Vladimir K Chebotar, Anna V Myskova, Margarita Khudyaeva, Oksana V Keleinikova, Maria E Baganova, Alexander N Zaplatkin, Veronika N Pishchik, Elena P Chizhevskaya
{"title":"Draft genome sequence and analysis of endophyte <i>Bacillus amyloliquefaciens</i> strain Can02R isolated from the roots of <i>Chenopodium album</i> L.","authors":"Vladimir K Chebotar, Anna V Myskova, Margarita Khudyaeva, Oksana V Keleinikova, Maria E Baganova, Alexander N Zaplatkin, Veronika N Pishchik, Elena P Chizhevskaya","doi":"10.1128/mra.01075-24","DOIUrl":"https://doi.org/10.1128/mra.01075-24","url":null,"abstract":"<p><p>In this study, we sequence, assemble, and analyze the genome of endophyte <i>Bacillus amyloliquefaciens</i> Can02R isolated from the roots of the resurrection plant host, <i>Chenopodium album</i>. The assembly of the strain's genome amounts to 3,965,760 bp and contains 3,989 coding sequences, among which synthetic antibiotic clusters and multidrug resistance transporters can be found.</p>","PeriodicalId":18654,"journal":{"name":"Microbiology Resource Announcements","volume":" ","pages":"e0107524"},"PeriodicalIF":0.7,"publicationDate":"2024-12-17","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142837820","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Improved genome sequence of Geobacillus kaustophilus GBlys, a lysogenic strain by lysogenic phage phiOH2.
IF 0.7
Microbiology Resource Announcements Pub Date : 2024-12-17 DOI: 10.1128/mra.00906-24
Rihito Tanaka, Soki Imbe, Yasuhiro Fujino, Yasuaki Hiromasa, Kazuki Mori, Kosuke Tashiro, Katsumi Doi
{"title":"Improved genome sequence of <i>Geobacillus kaustophilus</i> GBlys, a lysogenic strain by lysogenic phage phiOH2.","authors":"Rihito Tanaka, Soki Imbe, Yasuhiro Fujino, Yasuaki Hiromasa, Kazuki Mori, Kosuke Tashiro, Katsumi Doi","doi":"10.1128/mra.00906-24","DOIUrl":"https://doi.org/10.1128/mra.00906-24","url":null,"abstract":"<p><p><i>Geobacillus kaustophilus</i> GBlys is a lysogenic strain of the temperate phage phiOH2, which is 3,644,428 bp long, has a GC content of 52%, and contains 3,595 predicted protein-coding genes. Here, we report a resequenced GBlys genome obtained by deep sequencing with long and short reads.</p>","PeriodicalId":18654,"journal":{"name":"Microbiology Resource Announcements","volume":" ","pages":"e0090624"},"PeriodicalIF":0.7,"publicationDate":"2024-12-17","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142837829","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Draft genome sequence of endophyte Bacillus amyloliquefaciens strain Apn01R, isolated from the roots of Alhagi pseudalhagi (Bieb.) Fisch.
IF 0.7
Microbiology Resource Announcements Pub Date : 2024-12-17 DOI: 10.1128/mra.01074-24
Vladimir K Chebotar, Anna V Myskova, Margarita Khudyaeva, Oksana V Keleinikova, Maria E Baganova, Alexander N Zaplatkin, Veronika N Pishchik, Elena P Chizhevskaya
{"title":"Draft genome sequence of endophyte <i>Bacillus amyloliquefaciens</i> strain Apn01R, isolated from the roots of <i>Alhagi pseudalhagi</i> (Bieb.) Fisch.","authors":"Vladimir K Chebotar, Anna V Myskova, Margarita Khudyaeva, Oksana V Keleinikova, Maria E Baganova, Alexander N Zaplatkin, Veronika N Pishchik, Elena P Chizhevskaya","doi":"10.1128/mra.01074-24","DOIUrl":"https://doi.org/10.1128/mra.01074-24","url":null,"abstract":"<p><p>In this article, we announce the sequence and draft analysis of the genome of endophyte <i>Bacillus amyloliquefaciens</i> strain Apn01R, isolated from the roots of <i>Alhagi pseudalhagi</i> (Bieb.) Fisch. Our results show genes that may be crucial to defy abiotic stress and repel bacterial and fungal pathogens.</p>","PeriodicalId":18654,"journal":{"name":"Microbiology Resource Announcements","volume":" ","pages":"e0107424"},"PeriodicalIF":0.7,"publicationDate":"2024-12-17","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142837822","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
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