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Transcriptome sequencing data sets of Escherichia coli K-12 MG1655 treated with novobiocin, tetracycline, and rifampicin. 新生物素、四环素和利福平处理的大肠杆菌K-12 MG1655转录组测序数据集。
IF 0.7
Microbiology Resource Announcements Pub Date : 2025-06-12 Epub Date: 2025-05-22 DOI: 10.1128/mra.01169-24
Alexander Balkin, Andrey Plotnikov, Tatiana Konnova, Elena Shagimardanova, Hamza Hamo, Yuri Gogolev, Natalia Gogoleva
{"title":"Transcriptome sequencing data sets of <i>Escherichia coli</i> K-12 MG1655 treated with novobiocin, tetracycline, and rifampicin.","authors":"Alexander Balkin, Andrey Plotnikov, Tatiana Konnova, Elena Shagimardanova, Hamza Hamo, Yuri Gogolev, Natalia Gogoleva","doi":"10.1128/mra.01169-24","DOIUrl":"10.1128/mra.01169-24","url":null,"abstract":"<p><p>This report presents transcriptome datasets for <i>Escherichia coli</i> MG1655 treated with novobiocin, rifampicin, and tetracycline. Clusters of genes that respond to inhibition of RNA synthesis, protein synthesis, and DNA gyrase activity have been identified. The data may help to understand the mechanisms of general and specific resistance in <i>E. coli</i>.</p>","PeriodicalId":18654,"journal":{"name":"Microbiology Resource Announcements","volume":" ","pages":"e0116924"},"PeriodicalIF":0.7,"publicationDate":"2025-06-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12160492/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144120139","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Complete genome sequence of Cupriavidus sp. Agwp_2, isolated from soil in an iron mining area. 铁矿区土壤铜毒杆菌Agwp_2的全基因组序列。
IF 0.7
Microbiology Resource Announcements Pub Date : 2025-06-12 Epub Date: 2025-05-27 DOI: 10.1128/mra.00884-24
Zilin Yang, Shiping Zhang, Xiangyang Li
{"title":"Complete genome sequence of <i>Cupriavidus</i> sp. Agwp_2, isolated from soil in an iron mining area.","authors":"Zilin Yang, Shiping Zhang, Xiangyang Li","doi":"10.1128/mra.00884-24","DOIUrl":"10.1128/mra.00884-24","url":null,"abstract":"<p><p><i>Cupriavidus</i> spp. is a Gram-negative bacterium belonging to the Burkholderia family. Here, we report the complete genome sequence of <i>Cupriavidus</i> sp. Agwp_2, whose genome consists of two chromosomes of 3,823,900 bp and 2,784,676 bp, respectively, and one plasmid of 847,469 bp with an average GC content of 66.17%.</p>","PeriodicalId":18654,"journal":{"name":"Microbiology Resource Announcements","volume":" ","pages":"e0088424"},"PeriodicalIF":0.7,"publicationDate":"2025-06-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12160469/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144151191","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Draft genome report of Enterobacter roggenkampii strain MBBL_G6CM1 isolated from milk of a dairy cow with clinical mastitis. 临床乳腺炎奶牛乳液中分离的罗根坎匹肠杆菌MBBL_G6CM1株基因组报告草案
IF 0.7
Microbiology Resource Announcements Pub Date : 2025-06-12 DOI: 10.1128/mra.00302-25
Md Sayedul Islam, Md Morshedur Rahman, Naim Siddique, Zhokhar Dudayev, Mousumi Saha, M Nazmul Hoque
{"title":"Draft genome report of <i>Enterobacter roggenkampii</i> strain MBBL_G6CM1 isolated from milk of a dairy cow with clinical mastitis.","authors":"Md Sayedul Islam, Md Morshedur Rahman, Naim Siddique, Zhokhar Dudayev, Mousumi Saha, M Nazmul Hoque","doi":"10.1128/mra.00302-25","DOIUrl":"https://doi.org/10.1128/mra.00302-25","url":null,"abstract":"<p><p>We report the draft genome sequence of <i>Enterobacter roggenkampii</i> strain MBBL_G6CM1, isolated from the milk of a dairy cow with clinical mastitis. The assembled genome spans approximately 4.98 Mbp, comprising 130 contigs with 103.0× sequencing coverage and a guanine (G) and cytosine (C) content of 55.5%.</p>","PeriodicalId":18654,"journal":{"name":"Microbiology Resource Announcements","volume":" ","pages":"e0030225"},"PeriodicalIF":0.7,"publicationDate":"2025-06-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144275332","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Whole-genome analysis of Streptococcus mutans GDP01 isolate of dental caries tooth. 龋牙变形链球菌GDP01分离株全基因组分析。
IF 0.7
Microbiology Resource Announcements Pub Date : 2025-06-12 Epub Date: 2025-04-29 DOI: 10.1128/mra.01057-24
Guhanraj Radhamanalan, Suresh Mickymaray, Abdulaziz S Alothaim, Noorah Alsowayeh, Dhanasekaran Dharumadurai
{"title":"Whole-genome analysis of <i>Streptococcus mutans</i> GDP01 isolate of dental caries tooth.","authors":"Guhanraj Radhamanalan, Suresh Mickymaray, Abdulaziz S Alothaim, Noorah Alsowayeh, Dhanasekaran Dharumadurai","doi":"10.1128/mra.01057-24","DOIUrl":"10.1128/mra.01057-24","url":null,"abstract":"<p><p>Dental caries is a multifactorial infectious disease primarily driven by <i>Streptococcus mutans</i>. Here, we present the whole-genome sequence of <i>Streptococcus mutans</i> GDP01, which was isolated from the dental caries-infected children from Madurai, Tamil Nadu, India.</p>","PeriodicalId":18654,"journal":{"name":"Microbiology Resource Announcements","volume":" ","pages":"e0105724"},"PeriodicalIF":0.7,"publicationDate":"2025-06-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12160486/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143993109","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Draft whole-genome sequence of multidrug-resistant Enterococcus faecium strain MKL_BAU_Fe01 isolated from chicken meat. 绘制从鸡肉中分离的多重耐药屎肠球菌MKL_BAU_Fe01的全基因组序列。
IF 0.7
Microbiology Resource Announcements Pub Date : 2025-06-12 Epub Date: 2025-04-30 DOI: 10.1128/mra.00043-25
Al Amin Howlader, Fnu Nahiduzzaman, Raihan Islam Annan, Arnob Saha, Md Ariful Islam, Mst Minara Khatun
{"title":"Draft whole-genome sequence of multidrug-resistant <i>Enterococcus faecium</i> strain MKL_BAU_Fe01 isolated from chicken meat.","authors":"Al Amin Howlader, Fnu Nahiduzzaman, Raihan Islam Annan, Arnob Saha, Md Ariful Islam, Mst Minara Khatun","doi":"10.1128/mra.00043-25","DOIUrl":"10.1128/mra.00043-25","url":null,"abstract":"<p><p>We report the draft genome sequence of <i>Enterococcus faecium</i> MKL_BAU_Fe01 from chicken meat in Bangladesh. The 2,953,746 bp genome, with 37.99% GC content across 264 contigs, contains 3,117 genes, including 3,007 Coding Sequences (CDSs), 17 rRNAs, and 89 tRNAs, along with several antibiotic resistance and pathogenic genes.</p>","PeriodicalId":18654,"journal":{"name":"Microbiology Resource Announcements","volume":" ","pages":"e0004325"},"PeriodicalIF":0.7,"publicationDate":"2025-06-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12160569/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144017237","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Draft genome sequences of Listeria monocytogenes and Listeria innocua isolated from frozen corn in Japan. 绘制日本冷冻玉米中单核细胞增生李斯特菌和无害李斯特菌的基因组序列。
IF 0.7
Microbiology Resource Announcements Pub Date : 2025-06-12 Epub Date: 2025-04-29 DOI: 10.1128/mra.00183-25
Shiori Yamamoto, Yumiko Okada
{"title":"Draft genome sequences of <i>Listeria monocytogenes</i> and <i>Listeria innocua</i> isolated from frozen corn in Japan.","authors":"Shiori Yamamoto, Yumiko Okada","doi":"10.1128/mra.00183-25","DOIUrl":"10.1128/mra.00183-25","url":null,"abstract":"<p><p>Six <i>Listeria</i> spp. strains were isolated from frozen corn in Japan. Here, we report the draft genome sequences of these strains. The genome sizes ranged from 2,853,850 to 3,062,263 bp at 381× to 564× coverage.</p>","PeriodicalId":18654,"journal":{"name":"Microbiology Resource Announcements","volume":" ","pages":"e0018325"},"PeriodicalIF":0.7,"publicationDate":"2025-06-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12160514/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144018605","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Metagenome-assembled genomes from microbial communities producing lactic acid from dairy residues. 从乳制品残留物中产生乳酸的微生物群落的宏基因组组装基因组。
IF 0.7
Microbiology Resource Announcements Pub Date : 2025-06-12 Epub Date: 2025-04-29 DOI: 10.1128/mra.00179-25
Faith Koester, Kevin S Myers, Timothy J Donohue, Daniel R Noguera
{"title":"Metagenome-assembled genomes from microbial communities producing lactic acid from dairy residues.","authors":"Faith Koester, Kevin S Myers, Timothy J Donohue, Daniel R Noguera","doi":"10.1128/mra.00179-25","DOIUrl":"10.1128/mra.00179-25","url":null,"abstract":"<p><p>To advance the knowledge of microbial communities capable of fermenting agro-industrial residues into value-added products, we report metagenomes of microbial communities from four anaerobic bioreactors fed a mixture of ultra-filtered milk permeate and cottage cheese acid whey. This analysis produced 42 unique metagenome-assembled genomes (MAGs) that represent distinct taxa.</p>","PeriodicalId":18654,"journal":{"name":"Microbiology Resource Announcements","volume":" ","pages":"e0017925"},"PeriodicalIF":0.7,"publicationDate":"2025-06-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12160481/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144021812","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Complete genome sequence of a Ralstonia-infecting jumbo phage isolated from Maryland, USA. 从美国马里兰州分离的感染拉尔斯顿菌的巨型噬菌体的全基因组序列。
IF 0.7
Microbiology Resource Announcements Pub Date : 2025-06-12 Epub Date: 2025-05-07 DOI: 10.1128/mra.01051-24
Jonathan Shao, Abdelmonim A Ahmad, Qi Huang
{"title":"Complete genome sequence of a <i>Ralstonia</i>-infecting jumbo phage isolated from Maryland, USA.","authors":"Jonathan Shao, Abdelmonim A Ahmad, Qi Huang","doi":"10.1128/mra.01051-24","DOIUrl":"10.1128/mra.01051-24","url":null,"abstract":"<p><p>A <i>Ralstonia</i>-infecting jumbo phage was isolated from soil in Maryland, USA. The complete genome sequence was determined to be 225,638 bp and has a G+C content of 51.8%.</p>","PeriodicalId":18654,"journal":{"name":"Microbiology Resource Announcements","volume":" ","pages":"e0105124"},"PeriodicalIF":0.7,"publicationDate":"2025-06-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12160442/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144029412","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Lytic bacteriophages of Gordonia rubripertincta from topsoil in Lubbock, Texas: FlyingTortilla and ScarletRaider. 来自德克萨斯州拉伯克表层土壤的红戈登菌噬菌体：飞天玉米饼和ScarletRaider。
IF 0.7
Microbiology Resource Announcements Pub Date : 2025-06-12 Epub Date: 2025-04-15 DOI: 10.1128/mra.01333-24
Laurissa N Miller, Natalie Block, Whitney Dickens, Carson Bellew, Christian Deluna, Francesca Makilan, Malli Bhakta, Ashleigh Crawford, Trinity Criner, Chase Drucker, Aqsa Fayyaz, Jasmine Goh, Caitlyn Guetersloh, Claire Jansen, Dana Pham, Andrea Resendez, Austen Rowell, Fahareen B Mosharraf, Allie C Smith, Lisa M Bono
{"title":"Lytic bacteriophages of <i>Gordonia rubripertincta</i> from topsoil in Lubbock, Texas: FlyingTortilla and ScarletRaider.","authors":"Laurissa N Miller, Natalie Block, Whitney Dickens, Carson Bellew, Christian Deluna, Francesca Makilan, Malli Bhakta, Ashleigh Crawford, Trinity Criner, Chase Drucker, Aqsa Fayyaz, Jasmine Goh, Caitlyn Guetersloh, Claire Jansen, Dana Pham, Andrea Resendez, Austen Rowell, Fahareen B Mosharraf, Allie C Smith, Lisa M Bono","doi":"10.1128/mra.01333-24","DOIUrl":"10.1128/mra.01333-24","url":null,"abstract":"<p><p>We isolated two environmental phages, as part of the Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Sciences program, that infect <i>Gordonia rubripertincta</i> from topsoil in Lubbock, Texas. We report the complete genome sequences of lytic bacteriophages FlyingTortilla and ScarletRaider. Sequence similarity analysis reveals the viruses as a part of an unclassified order within the <i>Caudoviricetes</i> class.</p>","PeriodicalId":18654,"journal":{"name":"Microbiology Resource Announcements","volume":" ","pages":"e0133324"},"PeriodicalIF":0.7,"publicationDate":"2025-06-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12160450/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144028235","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Draft genomic sequences of a rare environmental pathogen, Comamonas kerstersii, from immunocompromised patients with acute gastroenteritis. 绘制急性胃肠炎免疫功能低下患者的一种罕见环境病原体克氏单胞菌的基因组序列。
IF 0.7
Microbiology Resource Announcements Pub Date : 2025-06-12 Epub Date: 2025-04-30 DOI: 10.1128/mra.00998-24
Mamatha Ballal, Sohan Rodney Bangera, Vignesh Shetty, Shashikiran Umakanth, Lauge Holm Sørensen, Rene S Hendriksen
{"title":"Draft genomic sequences of a rare environmental pathogen, <i>Comamonas kerstersii</i>, from immunocompromised patients with acute gastroenteritis.","authors":"Mamatha Ballal, Sohan Rodney Bangera, Vignesh Shetty, Shashikiran Umakanth, Lauge Holm Sørensen, Rene S Hendriksen","doi":"10.1128/mra.00998-24","DOIUrl":"10.1128/mra.00998-24","url":null,"abstract":"<p><p><i>Comamonas kerstersii</i> is a ubiquitous, aerobic, motile gram-negative bacteria considered commensal but has played a significant role as a potential pathogen causing clinical infections. Here, we report the genomic sequences of five <i>C. kerstersii</i> isolated from immunocompromised patients with acute gastroenteritis.</p>","PeriodicalId":18654,"journal":{"name":"Microbiology Resource Announcements","volume":" ","pages":"e0099824"},"PeriodicalIF":0.7,"publicationDate":"2025-06-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12160459/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144035717","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
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