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Complete genome sequence of Bacillus cereus NBNZ-2162, isolated from citrus rhizosphere soil. 从柑橘根瘤土壤中分离出的蜡样芽孢杆菌 NBNZ-2162 的完整基因组序列。
IF 0.7
Microbiology Resource Announcements Pub Date : 2024-11-12 Epub Date: 2024-10-21 DOI: 10.1128/mra.00696-24
Wei Chen, Ling Chen, Xiyu Cheng, Xiaoyan Liu, Lei Zhu
{"title":"Complete genome sequence of <i>Bacillus cereus</i> NBNZ-2162, isolated from citrus rhizosphere soil.","authors":"Wei Chen, Ling Chen, Xiyu Cheng, Xiaoyan Liu, Lei Zhu","doi":"10.1128/mra.00696-24","DOIUrl":"10.1128/mra.00696-24","url":null,"abstract":"<p><p>Plant rhizosphere microorganisms are an important source for discovering beneficial microorganisms in crops. Here we presented the complete genome of <i>Bacillus cereus</i> NBNZ-2162 isolated from citrus rhizosphere soil, of which the total length is 5,395,922 bp and possesses 5,368 CDS.</p>","PeriodicalId":18654,"journal":{"name":"Microbiology Resource Announcements","volume":null,"pages":null},"PeriodicalIF":0.7,"publicationDate":"2024-11-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142469971","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Complete genome sequence of Sagittula stellata strain E-37 reveals a plasmid-encoded type six secretion system. Sagittula stellata 菌株 E-37 的完整基因组序列揭示了质粒编码的六型分泌系统。
IF 0.7
Microbiology Resource Announcements Pub Date : 2024-11-12 Epub Date: 2024-10-22 DOI: 10.1128/mra.00501-24
Mary Nia M Santos, John Raymond B Salazar, Paul Christian T Gloria, Alecia N Septer
{"title":"Complete genome sequence of <i>Sagittula stellata</i> strain E-37 reveals a plasmid-encoded type six secretion system.","authors":"Mary Nia M Santos, John Raymond B Salazar, Paul Christian T Gloria, Alecia N Septer","doi":"10.1128/mra.00501-24","DOIUrl":"10.1128/mra.00501-24","url":null,"abstract":"<p><p>We announce the complete genome sequence of <i>Sagittula stellata</i> strain E-37. The hybrid assembly of long and short reads revealed one chromosome and four plasmids. Furthermore, the genome analysis showed that the plasmid-encoded type six secretion system is linked to plasmid replication genes that may be common to Roseobacters.</p>","PeriodicalId":18654,"journal":{"name":"Microbiology Resource Announcements","volume":null,"pages":null},"PeriodicalIF":0.7,"publicationDate":"2024-11-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142469977","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Metagenome-assembled genomes of Macrocystis-associated bacteria. 大囊藻相关细菌的元基因组。
IF 0.7
Microbiology Resource Announcements Pub Date : 2024-11-12 Epub Date: 2024-10-22 DOI: 10.1128/mra.00715-24
Emily G Aguirre, Julia A Schwartzman
{"title":"Metagenome-assembled genomes of <i>Macrocystis</i>-associated bacteria.","authors":"Emily G Aguirre, Julia A Schwartzman","doi":"10.1128/mra.00715-24","DOIUrl":"10.1128/mra.00715-24","url":null,"abstract":"<p><p>Microbes are important for the development of kelp, but little is understood about the functions encoded by these microbes. Here, we assembled 1,794 metagenome-associated genomes (MAGs) from bacteria that colonize gametophytes of the giant kelp <i>Macrocystis pyrifera</i>. MAGs were grouped into 149 dereplicated strains. Functional annotation is also presented.</p>","PeriodicalId":18654,"journal":{"name":"Microbiology Resource Announcements","volume":null,"pages":null},"PeriodicalIF":0.7,"publicationDate":"2024-11-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142470006","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Whole-genome sequence of Limnospira fusiformis NRMCF6962, isolated from lake water. 从湖水中分离出的 Limnospira fusiformis NRMCF6962 的全基因组序列。
IF 0.7
Microbiology Resource Announcements Pub Date : 2024-11-12 Epub Date: 2024-10-14 DOI: 10.1128/mra.00855-24
Fayaazuddin Thajuddin, Chandru Ashok, Shakena Fathima Thajuddin, Thajuddin Nooruddin, Dhanasekaran Dharumadurai, Olubukola Oluranti Babalola
{"title":"Whole-genome sequence of <i>Limnospira fusiformis</i> NRMCF6962, isolated from lake water.","authors":"Fayaazuddin Thajuddin, Chandru Ashok, Shakena Fathima Thajuddin, Thajuddin Nooruddin, Dhanasekaran Dharumadurai, Olubukola Oluranti Babalola","doi":"10.1128/mra.00855-24","DOIUrl":"10.1128/mra.00855-24","url":null,"abstract":"<p><p>The economically important Cyanobacterial genus <i>Limnospira</i> is commercially utilized as a dietary supplement and nutraceutical agent. We present the whole-genome sequence of <i>Limnospira fusiformis</i> NRMCF6962 and was isolated from Kondakarla Ava Lake of Visakhapatnam, Andhra Pradesh, India.</p>","PeriodicalId":18654,"journal":{"name":"Microbiology Resource Announcements","volume":null,"pages":null},"PeriodicalIF":0.7,"publicationDate":"2024-11-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142470009","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Genome sequence of Sulfurimonas sp. C5, a potential chemolithoautotrophic, sulfur-oxidizing bacterium isolated from a mangrove sediment. 从红树林沉积物中分离出的潜在化石自养型硫氧化细菌 Sulfurimonas sp.
IF 0.7
Microbiology Resource Announcements Pub Date : 2024-11-12 Epub Date: 2024-09-24 DOI: 10.1128/mra.00474-24
Qing Yuan, Shufang Wang, ShaSha Wang, Yangsheng Zhong, Lijing Jiang
{"title":"Genome sequence of <i>Sulfurimonas</i> sp. C5, a potential chemolithoautotrophic, sulfur-oxidizing bacterium isolated from a mangrove sediment.","authors":"Qing Yuan, Shufang Wang, ShaSha Wang, Yangsheng Zhong, Lijing Jiang","doi":"10.1128/mra.00474-24","DOIUrl":"10.1128/mra.00474-24","url":null,"abstract":"<p><p><i>Sulfurimonas</i> sp. strain C5 (MCCC 1A19556) is a strain with potential chemolithoautotrophic sulfur-oxidizing function, which is isolated from a mangrove sediment sample collected from Quanzhou Bay, Fujian Province, China. This report describes the genome sequence of strain C5, which possesses the gene sets for the sulfur-oxidizing pathway.</p>","PeriodicalId":18654,"journal":{"name":"Microbiology Resource Announcements","volume":null,"pages":null},"PeriodicalIF":0.7,"publicationDate":"2024-11-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142308129","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Complete genome and plasmid sequences of Moraxella sp. strains K02 and K23, closely related to M. osloensis, isolated from freshwaters. 从淡水中分离的与奥斯陆莫拉氏菌密切相关的莫拉氏菌 K02 和 K23 菌株的完整基因组和质粒序列。
IF 0.7
Microbiology Resource Announcements Pub Date : 2024-11-12 Epub Date: 2024-09-27 DOI: 10.1128/mra.00619-24
Ryoka Wakabayashi, Takeshi Naganuma, Ryosuke Nakai
{"title":"Complete genome and plasmid sequences of <i>Moraxella</i> sp. strains K02 and K23, closely related to <i>M. osloensis</i>, isolated from freshwaters.","authors":"Ryoka Wakabayashi, Takeshi Naganuma, Ryosuke Nakai","doi":"10.1128/mra.00619-24","DOIUrl":"10.1128/mra.00619-24","url":null,"abstract":"<p><p><i>Moraxella osloensis</i> is a cosmopolitan bacterium, ranging from human body to diverse environments. Only 2 of the 11 complete genomes so far are from non-clinical strains. Here, we present the complete genome and plasmid sequences of two freshwater isolates. The data will provide insights into the cosmopolitanism of this species.</p>","PeriodicalId":18654,"journal":{"name":"Microbiology Resource Announcements","volume":null,"pages":null},"PeriodicalIF":0.7,"publicationDate":"2024-11-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142350022","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Complete genome sequence of a potential new species Vibrio sp. NTOU-M3 isolated from hard clam, Meretrix taiwanica, in Taiwan. 从台湾硬蛤蜊（Meretrix taiwanica）中分离出的潜在新物种弧菌（Vibrio sp.NTOU-M3 的完整基因组序列。
IF 0.7
Microbiology Resource Announcements Pub Date : 2024-11-12 Epub Date: 2024-09-27 DOI: 10.1128/mra.00810-24
Che-Chun Chen, Wei-Hsiang Lin, Te-Hua Hsu, Ying-Ning Ho
{"title":"Complete genome sequence of a potential new species <i>Vibrio</i> sp. NTOU-M3 isolated from hard clam, <i>Meretrix taiwanica,</i> in Taiwan.","authors":"Che-Chun Chen, Wei-Hsiang Lin, Te-Hua Hsu, Ying-Ning Ho","doi":"10.1128/mra.00810-24","DOIUrl":"10.1128/mra.00810-24","url":null,"abstract":"<p><p><i>Vibrio</i> sp. NTOU-<i>M3</i> is a potential new bacterium isolated from hard clam (<i>Meretrix taiwanica</i>) in the estuarine region of Taiwan. The complete sequences obtained using Oxford Nanopore Technologies and Illumina sequencing consist of a 3,272,438-bp large circular chromosome and a 1,584,497-bp small circular chromosome.</p>","PeriodicalId":18654,"journal":{"name":"Microbiology Resource Announcements","volume":null,"pages":null},"PeriodicalIF":0.7,"publicationDate":"2024-11-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142350025","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Complete genome sequence of Mycobacteriophage Eaglepride. 噬分枝杆菌 Eaglepride 的完整基因组序列。
IF 0.7
Microbiology Resource Announcements Pub Date : 2024-11-12 Epub Date: 2024-09-30 DOI: 10.1128/mra.00599-24
Umar Sahi, Niati G Kottury, Nirav R Kottury, Hari Kotturi
{"title":"Complete genome sequence of Mycobacteriophage Eaglepride.","authors":"Umar Sahi, Niati G Kottury, Nirav R Kottury, Hari Kotturi","doi":"10.1128/mra.00599-24","DOIUrl":"10.1128/mra.00599-24","url":null,"abstract":"<p><p>Eaglepride is a mycobacteriophage isolated using <i>Mycobacterium smegmatis</i> mc<sup>2</sup>155. The genome length is 50,926 bp with 89 open reading frames and 1 tRNA gene. Based on gene content similarity to actinobacteriophages, Eaglepride is assigned to phage subcluster A10 and shares the highest nucleotide identity with mycobacteriophage OKCentral2016.</p>","PeriodicalId":18654,"journal":{"name":"Microbiology Resource Announcements","volume":null,"pages":null},"PeriodicalIF":0.7,"publicationDate":"2024-11-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142350026","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
ipolygrowth: an R package to calculate individual growth curve parameters from bacterial time series data. ipolygrowth：从细菌时间序列数据中计算单个生长曲线参数的 R 软件包。
IF 0.7
Microbiology Resource Announcements Pub Date : 2024-11-12 Epub Date: 2024-09-27 DOI: 10.1128/mra.00662-24
Jifan Wang, Kathryn Barger
{"title":"ipolygrowth: an R package to calculate individual growth curve parameters from bacterial time series data.","authors":"Jifan Wang, Kathryn Barger","doi":"10.1128/mra.00662-24","DOIUrl":"10.1128/mra.00662-24","url":null,"abstract":"<p><p>The ipolygrowth package is a user-friendly tool that calculates growth curve parameters for time series data from microplate readers. Calculations are based on fourth-degree polynomial functions, which provide an alternative to commonly used sigmoidal models. The package is available for installation through the Comprehensive R Archive Network.</p>","PeriodicalId":18654,"journal":{"name":"Microbiology Resource Announcements","volume":null,"pages":null},"PeriodicalIF":0.7,"publicationDate":"2024-11-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142350043","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Complete genome sequences of eight Pasteurella multocida isolates representing all lipopolysaccharide outer core loci. 代表所有脂多糖外核位点的 8 个多杀性巴氏杆菌分离株的完整基因组序列。
IF 0.7
Microbiology Resource Announcements Pub Date : 2024-11-12 Epub Date: 2024-10-04 DOI: 10.1128/mra.00604-24
Amro Hashish, Timothy J Johnson, Mostafa Ghanem, Yuko Sato, Nubia R Macedo, Karen J LeCount, Mohamed El-Gazzar
{"title":"Complete genome sequences of eight <i>Pasteurella multocida</i> isolates representing all lipopolysaccharide outer core loci.","authors":"Amro Hashish, Timothy J Johnson, Mostafa Ghanem, Yuko Sato, Nubia R Macedo, Karen J LeCount, Mohamed El-Gazzar","doi":"10.1128/mra.00604-24","DOIUrl":"10.1128/mra.00604-24","url":null,"abstract":"<p><p><i>Pasteurella multocida</i> (PM) is a major bacterial pathogen that causes fowl cholera disease in both domestic poultry and wild birds. Here, we report the complete genome sequences of eight PM isolates representing all known lipopolysaccharide outer core loci, which are phenotypically expressed as 16 known PM serotypes.</p>","PeriodicalId":18654,"journal":{"name":"Microbiology Resource Announcements","volume":null,"pages":null},"PeriodicalIF":0.7,"publicationDate":"2024-11-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142372323","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
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