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Draft genome sequence of Bremerella cremea LHWP2 isolated from dead ark clam revealing potential nitrogen metabolism pathways.
IF 0.7
Microbiology Resource Announcements Pub Date : 2024-12-13 DOI: 10.1128/mra.00974-24
Jin-Hee Seo, Kyung June Yim, Jongbin Lim, Ji-Yeon Chun, Hae-Won Lee
{"title":"Draft genome sequence of <i>Bremerella cremea</i> LHWP2 isolated from dead ark clam revealing potential nitrogen metabolism pathways.","authors":"Jin-Hee Seo, Kyung June Yim, Jongbin Lim, Ji-Yeon Chun, Hae-Won Lee","doi":"10.1128/mra.00974-24","DOIUrl":"https://doi.org/10.1128/mra.00974-24","url":null,"abstract":"<p><p>We present the draft genome sequence of <i>Bremerella cremea</i> LHWP2, a notable member of the Planctomycetes-Verrucomicrobia-Chlamydiae group, isolated from a dead ark clam. The 6,211,343-bp genome contains 5,304 coding gene sequences with a guanine-cytosine content of 56.5 %. The draft genome also reveals potential nitrogen metabolic pathways.</p>","PeriodicalId":18654,"journal":{"name":"Microbiology Resource Announcements","volume":" ","pages":"e0097424"},"PeriodicalIF":0.7,"publicationDate":"2024-12-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142818628","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Draft genome of a Bacillus subtilis ICS isolated from an okra (Abelmoschus esculentus) extract exhibited genes related to plant growth-promoting potential. 从秋葵（Abelmoschus esculentus）提取物中分离出的枯草芽孢杆菌（Bacillus subtilis ICS）基因组草案显示了与植物生长促进潜力有关的基因。
IF 0.7
Microbiology Resource Announcements Pub Date : 2024-12-13 DOI: 10.1128/mra.00736-24
Paul Christian T Gloria, Ma Jhanessa A Luague, Maria Auxilia T Siringan, Vina B Argayosa
{"title":"Draft genome of a <i>Bacillus subtilis</i> ICS isolated from an okra (<i>Abelmoschus esculentus</i>) extract exhibited genes related to plant growth-promoting potential.","authors":"Paul Christian T Gloria, Ma Jhanessa A Luague, Maria Auxilia T Siringan, Vina B Argayosa","doi":"10.1128/mra.00736-24","DOIUrl":"https://doi.org/10.1128/mra.00736-24","url":null,"abstract":"<p><p>Here, we report the draft genome of <i>Bacillus subtilis</i> ICS isolated from the aqueous extract of <i>Abelmoschus esculentus</i>. The isolate has a genome size of 4.15 Mb, 43.07% GC, 99.8% BUSCO completeness, and 91.15% CheckM completeness. The genome exhibited genes related to plant growth promotion and secondary metabolite production.</p>","PeriodicalId":18654,"journal":{"name":"Microbiology Resource Announcements","volume":" ","pages":"e0073624"},"PeriodicalIF":0.7,"publicationDate":"2024-12-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142818625","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Complete genomes of Salmonella and draft genome of Escherichia isolates from oysters collected in Canada. 从加拿大采集的牡蛎中分离出的沙门氏菌的完整基因组和埃希氏菌的基因组草案。
IF 0.7
Microbiology Resource Announcements Pub Date : 2024-12-13 DOI: 10.1128/mra.00585-24
Bojan Shutinoski, Annika Flint, Sandeep Tamber, Kelly Weedmark, Swapan Banerjee
{"title":"Complete genomes of <i>Salmonella</i> and draft genome of <i>Escherichia</i> isolates from oysters collected in Canada.","authors":"Bojan Shutinoski, Annika Flint, Sandeep Tamber, Kelly Weedmark, Swapan Banerjee","doi":"10.1128/mra.00585-24","DOIUrl":"https://doi.org/10.1128/mra.00585-24","url":null,"abstract":"<p><p>Human enteric pathogens in fresh uncooked seafood are of concern to human health. Here, we report the complete genomes of bacteria not commonly found in freshly harvested seafood, two <i>Salmonella</i> Typhimurium strains and one draft <i>Escherichia coli</i> genome, isolated from harvested oysters grown in Canada.</p>","PeriodicalId":18654,"journal":{"name":"Microbiology Resource Announcements","volume":" ","pages":"e0058524"},"PeriodicalIF":0.7,"publicationDate":"2024-12-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142818622","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Complete genome sequence of a nitrogen-fixing bacterium, Klebsiella pasteurii (formerly Klebsiella oxytoca) NG13, a rice rhizosphere isolate. 水稻根瘤菌分离物--巴氏克雷伯氏菌（原名氧合克雷伯氏菌）NG13--固氮菌的完整基因组序列。
IF 0.7
Microbiology Resource Announcements Pub Date : 2024-12-12 Epub Date: 2024-11-14 DOI: 10.1128/mra.00885-24
Daisuke Yoshidome, Makoto Hidaka, Saori Kosono, Makoto Nishiyama
{"title":"Complete genome sequence of a nitrogen-fixing bacterium, <i>Klebsiella pasteurii</i> (formerly <i>Klebsiella oxytoca</i>) NG13, a rice rhizosphere isolate.","authors":"Daisuke Yoshidome, Makoto Hidaka, Saori Kosono, Makoto Nishiyama","doi":"10.1128/mra.00885-24","DOIUrl":"10.1128/mra.00885-24","url":null,"abstract":"<p><p><i>Klebsiella oxytoca</i> NG13 was isolated from the rice rhizosphere in the early 1980s, and its nitrogen-fixing ability has been investigated. For the further advanced research, we sequenced its genome. NG13 contains one chromosome of 5,897,538 bp and no plasmid. NG13 should be classified to <i>Klebsiella pasteurii</i> based on ANI.</p>","PeriodicalId":18654,"journal":{"name":"Microbiology Resource Announcements","volume":" ","pages":"e0088524"},"PeriodicalIF":0.7,"publicationDate":"2024-12-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11636217/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142623950","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Draft genome sequence of a cyanobacterium Gloeocapsa sp. BRSZ, isolated from Bo Khlueng hot spring in Ratchaburi, Thailand. 从泰国叻丕府 Bo Khlueng 温泉分离的蓝藻 Gloeocapsa sp.
IF 0.7
Microbiology Resource Announcements Pub Date : 2024-12-12 Epub Date: 2024-10-29 DOI: 10.1128/mra.00681-24
Taiki Aono, Sasiprapa Samsri, Rungaroon Waditee-Sirisattha, Hakuto Kageyama
{"title":"Draft genome sequence of a cyanobacterium <i>Gloeocapsa</i> sp. BRSZ, isolated from Bo Khlueng hot spring in Ratchaburi, Thailand.","authors":"Taiki Aono, Sasiprapa Samsri, Rungaroon Waditee-Sirisattha, Hakuto Kageyama","doi":"10.1128/mra.00681-24","DOIUrl":"10.1128/mra.00681-24","url":null,"abstract":"<p><p>We report the draft genome sequence of <i>Gloeocapsa</i> sp. BRSZ isolated from Bo Khlueng hot spring in Thailand, comprising 42 contigs assembled at the scaffold level, totaling 6,084,403 bp, with 43.5% G + C content. It contains 5,456 putative protein-coding genes, including genes responsible for biosynthesis of mycosporine-like amino acids.</p>","PeriodicalId":18654,"journal":{"name":"Microbiology Resource Announcements","volume":" ","pages":"e0068124"},"PeriodicalIF":0.7,"publicationDate":"2024-12-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11636366/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142522417","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Draft genomes of the bile duct microbiome strains Klebsiella pneumoniae and Enterococcus lactis isolated from bilioenteric drainages with biofilm-forming abilities. 从具有生物膜形成能力的胆肠引流管中分离出的胆管微生物菌株肺炎克雷伯氏菌和乳肠球菌的基因组草案。
IF 0.7
Microbiology Resource Announcements Pub Date : 2024-12-12 Epub Date: 2024-10-29 DOI: 10.1128/mra.00202-24
Güel Dumann, Oliver Rohland, Mostafa Y Abdel-Glil, Rosalind J Allen, Michael Bauer, Anne Busch
{"title":"Draft genomes of the bile duct microbiome strains <i>Klebsiella pneumoniae</i> and <i>Enterococcus lactis</i> isolated from bilioenteric drainages with biofilm-forming abilities.","authors":"Güel Dumann, Oliver Rohland, Mostafa Y Abdel-Glil, Rosalind J Allen, Michael Bauer, Anne Busch","doi":"10.1128/mra.00202-24","DOIUrl":"10.1128/mra.00202-24","url":null,"abstract":"<p><p>We describe the genetic properties of two strains isolated from the elusive bile duct microbiome from solid organ transplant patients. Bacterial strains <i>Enterococcus lactis</i> (MS-STENT-08-E-001) and <i>Klebsiella pneumoniae</i> (MS-STENT-01-M-001) were isolated from the biofilms of bile duct catheters.</p>","PeriodicalId":18654,"journal":{"name":"Microbiology Resource Announcements","volume":" ","pages":"e0020224"},"PeriodicalIF":0.7,"publicationDate":"2024-12-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11636323/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142522419","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Genomic characterization of parvovirus and beak and feather disease virus in cockatiel (Nymphicus hollandicus). 鹦鹉（Nymphicus hollandicus）副病毒和喙羽病病毒的基因组特征。
IF 0.7
Microbiology Resource Announcements Pub Date : 2024-12-12 Epub Date: 2024-10-29 DOI: 10.1128/mra.00820-24
Subir Sarker, Saranika Talukder, Md Safiul Alam Bhuiyan, Md Hakimul Haque
{"title":"Genomic characterization of parvovirus and beak and feather disease virus in cockatiel (<i>Nymphicus hollandicus</i>).","authors":"Subir Sarker, Saranika Talukder, Md Safiul Alam Bhuiyan, Md Hakimul Haque","doi":"10.1128/mra.00820-24","DOIUrl":"10.1128/mra.00820-24","url":null,"abstract":"<p><p>This study reveals the genomes of psittaciform chaphamaparvovirus 5 (PsChPV-5) and a beak and feather disease virus (BFDV), discovered in the fecal samples of cockatiels. The genomes of PsChPV-5 and BFDV are 4,366 and 2,009 base pairs long, respectively, each exhibiting the characteristic genomic structures of their respective genera.</p>","PeriodicalId":18654,"journal":{"name":"Microbiology Resource Announcements","volume":" ","pages":"e0082024"},"PeriodicalIF":0.7,"publicationDate":"2024-12-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11636096/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142522421","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Whole-genome sequences of Colletotrichum siamense and Colletotrichum truncatum, causal agents of pod and foliar diseases on African yam bean. Colletotrichum siamense 和 Colletotrichum truncatum 的全基因组序列，它们是非洲山药豆荚和叶片病害的病原菌。
IF 0.7
Microbiology Resource Announcements Pub Date : 2024-12-12 Epub Date: 2024-10-31 DOI: 10.1128/mra.00722-24
Olaide M Ogunsanya, Andrew D Armitage, Clement G Afolabi, Olaniyi Oyatomi, Elinor P Thompson, Alejandro Ortega-Beltran, Michael Abberton
{"title":"Whole-genome sequences of <i>Colletotrichum siamense</i> and <i>Colletotrichum truncatum</i>, causal agents of pod and foliar diseases on African yam bean.","authors":"Olaide M Ogunsanya, Andrew D Armitage, Clement G Afolabi, Olaniyi Oyatomi, Elinor P Thompson, Alejandro Ortega-Beltran, Michael Abberton","doi":"10.1128/mra.00722-24","DOIUrl":"10.1128/mra.00722-24","url":null,"abstract":"<p><p>Diseases caused by <i>Colletotrichum</i> fungi result in major agricultural losses worldwide. Here, we present two draft genomes of <i>Colletotrichum</i> spp. responsible for foliar and pod blight on African yam bean. <i>Colletotrichum siamense</i> and <i>Colletotrichum truncatum</i> assemblies totalled 55.8 Mb in 563 contigs and 54.8 Mb in 1,240 contigs, respectively.</p>","PeriodicalId":18654,"journal":{"name":"Microbiology Resource Announcements","volume":" ","pages":"e0072224"},"PeriodicalIF":0.7,"publicationDate":"2024-12-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11636229/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142546388","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Genome sequences of nine Clostridium scindens strains isolated from human feces. 从人类粪便中分离出的九株斯金登梭菌的基因组序列。
IF 0.7
Microbiology Resource Announcements Pub Date : 2024-12-12 Epub Date: 2024-11-04 DOI: 10.1128/mra.00848-24
Francelys V Fernandez-Materan, Kelly Yovani Olivos-Caicedo, Steven L Daniel, Kimberly K O Walden, Christopher J Fields, Alvaro G Hernandez, Joao M P Alves, Jason M Ridlon
{"title":"Genome sequences of nine <i>Clostridium scindens</i> strains isolated from human feces.","authors":"Francelys V Fernandez-Materan, Kelly Yovani Olivos-Caicedo, Steven L Daniel, Kimberly K O Walden, Christopher J Fields, Alvaro G Hernandez, Joao M P Alves, Jason M Ridlon","doi":"10.1128/mra.00848-24","DOIUrl":"10.1128/mra.00848-24","url":null,"abstract":"<p><p><i>Clostridium scindens</i> is an important member of the gut microbiome. Strains of <i>C. scindens</i> are model organisms for bile acid and steroid metabolism studies. The genome sequences for nine <i>C. scindens</i> strains isolated from human feces are reported. Genomes ranged from 3,403,497 to 4,318,168 bp, 46.5% to 48% G+C content, and 3,386 to 4,137 protein-coding total genes.</p>","PeriodicalId":18654,"journal":{"name":"Microbiology Resource Announcements","volume":" ","pages":"e0084824"},"PeriodicalIF":0.7,"publicationDate":"2024-12-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11636285/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142569084","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Description of genome sequences of arthropod-associated spirochetes of the genus Entomospira. 描述昆虫螺旋体属节肢动物相关螺旋体的基因组序列。
IF 0.7
Microbiology Resource Announcements Pub Date : 2024-12-12 Epub Date: 2024-11-15 DOI: 10.1128/mra.00740-24
Silvie Sikutova, Lucía Graña-Miraglia, Marie Vancová, Tomáš Bílý, Andreas Sing, Santiago Castillo-Ramirez, Ivo Rudolf, Gabriele Margos, Volker Fingerle
{"title":"Description of genome sequences of arthropod-associated spirochetes of the genus <i>Entomospira</i>.","authors":"Silvie Sikutova, Lucía Graña-Miraglia, Marie Vancová, Tomáš Bílý, Andreas Sing, Santiago Castillo-Ramirez, Ivo Rudolf, Gabriele Margos, Volker Fingerle","doi":"10.1128/mra.00740-24","DOIUrl":"10.1128/mra.00740-24","url":null,"abstract":"<p><p>Spirochetal bacteria isolated from arthropods of the genera <i>Culex</i> and <i>Aedes</i> are termed BR149, BR151 (<i>Entomospira culicis</i>), BR193 (<i>Entomospira entomophila</i>), and BR208 (<i>Entomospira nematocerorum</i>). Genome sizes assembled from Illumina MiSeq and Oxford Nanopore reads varied between 1.67 and 1.78 Mb containing three to six plasmids. GC content ranged from 38.5% to 45.76%.</p>","PeriodicalId":18654,"journal":{"name":"Microbiology Resource Announcements","volume":" ","pages":"e0074024"},"PeriodicalIF":0.7,"publicationDate":"2024-12-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11636382/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142639212","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
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