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Aerial signaling by plant-associated Streptomyces setonii WY228 regulates plant growth and enhances salt stress tolerance 与植物相关的链霉菌 WY228 发出的空中信号调节植物生长并增强耐盐胁迫能力。
IF 6.1 1区 生物学
Microbiological research Pub Date : 2024-06-30 DOI: 10.1016/j.micres.2024.127823
Yue-Ying Qin , Yuan Gong , Su-Yun Kong, Zhi-Yuan Wan, Jia-Qi Liu, Ke Xing, Sheng Qin
{"title":"Aerial signaling by plant-associated Streptomyces setonii WY228 regulates plant growth and enhances salt stress tolerance","authors":"Yue-Ying Qin ,&nbsp;Yuan Gong ,&nbsp;Su-Yun Kong,&nbsp;Zhi-Yuan Wan,&nbsp;Jia-Qi Liu,&nbsp;Ke Xing,&nbsp;Sheng Qin","doi":"10.1016/j.micres.2024.127823","DOIUrl":"10.1016/j.micres.2024.127823","url":null,"abstract":"<div><p>Plant-associated streptomycetes play important roles in plant growth and development. However, knowledge of volatile-mediated crosstalk between <em>Streptomyces</em> spp<em>.</em> and plants remains limited. In this study, we investigated the impact of volatiles from nine endophytic <em>Streptomyces</em> strains on the growth and development of plants. One versatile strain, <em>Streptomyces setonii</em> WY228, was found to significantly promote the growth of <em>Arabidopsis thaliana</em> and tomato seedlings, confer salt tolerance, and induce early flowering and increased fruit yield following volatile treatment. Analysis of plant growth-promoting traits revealed that <em>S. setonii</em> WY228 could produce indole-3-acetic acid, siderophores, ACC deaminase, fix nitrogen, and solubilize inorganic phosphate. These capabilities were further confirmed through genome sequencing and analysis. Volatilome analysis indicated that the volatile organic compounds emitted from ISP-2 medium predominantly comprised sesquiterpenes and 2-ethyl-5-methylpyrazine. Further investigations showed that 2-ethyl-5-methylpyrazine and sesquiterpenoid volatiles were the primary regulators promoting growth, as confirmed by experiments using the terpene synthesis inhibitor phosphomycin, pure compounds, and comparisons of volatile components. Transcriptome analysis, combined with mutant and inhibitor studies, demonstrated that WY228 volatiles promoted root growth by activating <em>Arabidopsis</em> auxin signaling and polar transport, and enhanced root hair development through ethylene signaling activation. Additionally, it was confirmed that volatiles can stimulate plant abscisic acid signaling and activate the MYB75 transcription factor, thereby promoting anthocyanin synthesis and enhancing plant salt stress tolerance. Our findings suggest that aerial signaling-mediated plant growth promotion and abiotic stress tolerance represent potentially overlooked mechanisms of <em>Streptomyces</em>-plant interactions. This study also provides an exciting strategy for the regulation of plant growth and the improvement of horticultural crop yields within sustainable agricultural practices.</p></div>","PeriodicalId":18564,"journal":{"name":"Microbiological research","volume":null,"pages":null},"PeriodicalIF":6.1,"publicationDate":"2024-06-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141498374","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Field isolates of Beauveria bassiana exhibit biological heterogeneity in multitrophic interactions of agricultural importance Beauveria bassiana 的田间分离物在具有农业重要性的多营养相互作用中表现出生物异质性。
IF 6.1 1区 生物学
Microbiological research Pub Date : 2024-06-29 DOI: 10.1016/j.micres.2024.127819
M. Ranesi , S. Vitale , A. Staropoli , I. Di Lelio , L.G. Izzo , M.G. De Luca , A. Becchimanzi , F. Pennacchio , M. Lorito , S.L. Woo , F. Vinale , D. Turrà
{"title":"Field isolates of Beauveria bassiana exhibit biological heterogeneity in multitrophic interactions of agricultural importance","authors":"M. Ranesi ,&nbsp;S. Vitale ,&nbsp;A. Staropoli ,&nbsp;I. Di Lelio ,&nbsp;L.G. Izzo ,&nbsp;M.G. De Luca ,&nbsp;A. Becchimanzi ,&nbsp;F. Pennacchio ,&nbsp;M. Lorito ,&nbsp;S.L. Woo ,&nbsp;F. Vinale ,&nbsp;D. Turrà","doi":"10.1016/j.micres.2024.127819","DOIUrl":"10.1016/j.micres.2024.127819","url":null,"abstract":"<div><p><em>Beauveria bassiana</em> (<em>Bb</em>) is a widespread entomopathogenic fungus widely used in agriculture for crop protection. Other than pest control, fungi belonging to the <em>B. bassiana</em> complex represent an important microbial resource in agroecosystems, considering their multiple interactions with other microorganisms as antagonists of phytopathogens, or with plants as endophytic colonizers and growth promoters. Here, we characterised field collected or commercial isolates of <em>B. bassiana</em> relative to the environmental factors that affect their growth. We further compared the metabolome, the entomopathogenic potential and biocontrol activity of the tested isolates respectively on the insect pest <em>Spodoptera littoralis</em> or against the fungal plant pathogen <em>Fusarium oxysporum.</em> Our analysis revealed that the <em>B. bassiana</em> complex is characterised by a high level of inter-isolate heterogeneity in terms of nutritional requirements, establishment of intra- or inter-kingdom interactions, and the nature of metabolites produced. Interestingly, certain <em>B. bassiana</em> isolates demonstrated a preference for low nutrient plant-derived media, which hints at their adaptation towards an endophytic lifestyle over a saprophytic one. In addition, there was a noticeable variation among different <em>B. bassiana</em> isolates in their capacity to kill <em>S. littoralis</em> larvae in a contact infection test, but not in an intrahaemocoelic injection experiment, suggesting a unique level of adaptability specific to the host. On the other hand, most <em>B. bassiana</em> isolates exhibited similar biocontrol efficacy against the soil-dwelling ascomycete <em>F. oxysporum</em> f. sp. <em>lycopersici</em>, a pathogen responsible for vascular wilt disease in tomato plants, effectively averting wilting. Overall, we show that the effectiveness of <em>B. bassiana</em> isolates can greatly vary, emphasising the importance of isolate selection and nutritional adaptability consideration for their use in sustainable agriculture.</p></div>","PeriodicalId":18564,"journal":{"name":"Microbiological research","volume":null,"pages":null},"PeriodicalIF":6.1,"publicationDate":"2024-06-29","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.sciencedirect.com/science/article/pii/S0944501324002209/pdfft?md5=2800067800018fd697ee34ee8bcc80f2&pid=1-s2.0-S0944501324002209-main.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141580219","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Multigenerational inheritance drives symbiotic interactions of the bacterium Bacillus subtilis with its plant host 多代遗传驱动枯草芽孢杆菌与植物宿主的共生相互作用
IF 6.1 1区 生物学
Microbiological research Pub Date : 2024-06-28 DOI: 10.1016/j.micres.2024.127814
Omri Gilhar , Liat Rahamim Ben-Navi , Tsviya Olender , Asaph Aharoni , Jonathan Friedman , Ilana Kolodkin-Gal
{"title":"Multigenerational inheritance drives symbiotic interactions of the bacterium Bacillus subtilis with its plant host","authors":"Omri Gilhar ,&nbsp;Liat Rahamim Ben-Navi ,&nbsp;Tsviya Olender ,&nbsp;Asaph Aharoni ,&nbsp;Jonathan Friedman ,&nbsp;Ilana Kolodkin-Gal","doi":"10.1016/j.micres.2024.127814","DOIUrl":"https://doi.org/10.1016/j.micres.2024.127814","url":null,"abstract":"<div><p><em>Bacillus subtilis</em> is a beneficial bacterium that supports plant growth and protects plants from bacterial, fungal, and viral infections. Using a simplified system of <em>B. subtilis</em> and <em>Arabidopsis thaliana</em> interactions, we studied the fitness and transcriptome of bacteria detached from the root over generations of growth in LB medium. We found that bacteria previously associated with the root or exposed to its secretions had greater stress tolerance and were more competitive in root colonization than bacteria not previously exposed to the root. Furthermore, our transcriptome results provide evidence that plant secretions induce a microbial stress response and fundamentally alter signaling by the cyclic nucleotide c-di-AMP, a signature maintained by their descendants. The changes in cellular physiology due to exposure to plant exudates were multigenerational, as they allowed not only the bacterial cells that colonized a new plant but also their descendants to have an advance over naive competitors of the same species, while the overall plasticity of gene expression and rapid adaptation were maintained. These changes were hereditary but not permanent. Our work demonstrates a bacterial memory manifested by multigenerational reversible adaptation to plant hosts in the form of activation of the stressosome, which confers an advantage to symbiotic bacteria during competition.</p></div>","PeriodicalId":18564,"journal":{"name":"Microbiological research","volume":null,"pages":null},"PeriodicalIF":6.1,"publicationDate":"2024-06-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141483208","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Deciphering the mechanisms involved in reduced sensitivity to azoles and fengycin lipopeptide in Venturia inaequalis 破译对唑类和芬奇霉素脂肽敏感性降低的机制。
IF 6.1 1区 生物学
Microbiological research Pub Date : 2024-06-27 DOI: 10.1016/j.micres.2024.127816
Aline Leconte , Justine Jacquin , Matthieu Duban , Caroline Deweer , Pauline Trapet , Frédéric Laruelle , Amaury Farce , Philippe Compère , Karin Sahmer , Valentin Fiévet , Alexis Hoste , Ali Siah , Anissa Lounès-Hadj Sahraoui , Philippe Jacques , François Coutte , Magali Deleu , Jérôme Muchembled
{"title":"Deciphering the mechanisms involved in reduced sensitivity to azoles and fengycin lipopeptide in Venturia inaequalis","authors":"Aline Leconte ,&nbsp;Justine Jacquin ,&nbsp;Matthieu Duban ,&nbsp;Caroline Deweer ,&nbsp;Pauline Trapet ,&nbsp;Frédéric Laruelle ,&nbsp;Amaury Farce ,&nbsp;Philippe Compère ,&nbsp;Karin Sahmer ,&nbsp;Valentin Fiévet ,&nbsp;Alexis Hoste ,&nbsp;Ali Siah ,&nbsp;Anissa Lounès-Hadj Sahraoui ,&nbsp;Philippe Jacques ,&nbsp;François Coutte ,&nbsp;Magali Deleu ,&nbsp;Jérôme Muchembled","doi":"10.1016/j.micres.2024.127816","DOIUrl":"10.1016/j.micres.2024.127816","url":null,"abstract":"<div><p>Apple scab, caused by the hemibiotrophic fungus <em>Venturia inaequalis</em>, is currently the most common and damaging disease in apple orchards. Two strains of <em>V. inaequalis</em> (S755 and Rs552) with different sensitivities to azole fungicides and the bacterial metabolite fengycin were compared to determine the mechanisms responsible for these differences. Antifungal activity tests showed that Rs552 had reduced sensitivity to tebuconazole and tetraconazole, as well as to fengycin alone or in a binary mixture with other lipopeptides (iturin A, pumilacidin, lichenysin). S755 was highly sensitive to fengycin, whose activity was close to that of tebuconazole. Unlike fengycin, lipopeptides from the iturin family (mycosubtilin, iturin A) had similar activity on both strains, while those from the surfactin family (lichenysin, pumilacidin) were not active, except in binary mixtures with fengycin. The activity of lipopeptides varies according to their family and structure. Analyses to determine the difference in sensitivity to azoles (which target the CYP51 enzyme involved in the ergosterol biosynthesis pathway) showed that the reduced sensitivity in Rs552 is linked to (i) a constitutive increased expression of the <em>Cyp51A</em> gene caused by insertions in the upstream region and (ii) greater efflux by membrane pumps with the involvement of ABC transporters. Microscopic observations revealed that fengycin, known to interact with plasma membranes, induced morphological and cytological changes in cells from both strains. Sterol and phospholipid analyses showed a higher level of ergosta-7,22-dien-3-ol and a lower level of PI(C16:0/C18:1) in Rs552 compared with S755. These differences could therefore influence the composition of the plasma membrane and explain the differential sensitivity of the strains to fengycin. However, the similar antifungal activities of mycosubtilin and iturin A in the two strains indirectly indicate that sterols are probably not involved in the fengycin resistance mechanism. This leads to the conclusion that different mechanisms are responsible for the difference in susceptibility to azoles or fengycin in the strains studied.</p></div>","PeriodicalId":18564,"journal":{"name":"Microbiological research","volume":null,"pages":null},"PeriodicalIF":6.1,"publicationDate":"2024-06-27","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.sciencedirect.com/science/article/pii/S0944501324002179/pdfft?md5=276fe70665b81dd2af4f2e522dc35585&pid=1-s2.0-S0944501324002179-main.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141534806","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Physiological and genomic insights into a psychrotrophic drought-tolerant bacterial consortium for crop improvement in cold, semiarid regions 寒冷半干旱地区作物改良用精神营养型耐旱细菌联合体的生理学和基因组学研究。
IF 6.1 1区 生物学
Microbiological research Pub Date : 2024-06-26 DOI: 10.1016/j.micres.2024.127818
Shruti Sinai Borker , Pallavi Sharma , Aman Thakur , Aman Kumar , Anil Kumar , Rakshak Kumar
{"title":"Physiological and genomic insights into a psychrotrophic drought-tolerant bacterial consortium for crop improvement in cold, semiarid regions","authors":"Shruti Sinai Borker ,&nbsp;Pallavi Sharma ,&nbsp;Aman Thakur ,&nbsp;Aman Kumar ,&nbsp;Anil Kumar ,&nbsp;Rakshak Kumar","doi":"10.1016/j.micres.2024.127818","DOIUrl":"10.1016/j.micres.2024.127818","url":null,"abstract":"<div><p>The agricultural land in the Indian Himalayan region (IHR) is susceptible to various spells of snowfall, which can cause nutrient leaching, low temperatures, and drought conditions. The current study, therefore, sought an indigenous psychrotrophic plant growth-promoting (PGP) bacterial inoculant with the potential to alleviate crop productivity under cold and drought stress. Psychrotrophic bacteria preisolated from the night-soil compost of the Lahaul Valley of northwestern Himalaya were screened for phosphate (P) and potash (K) solubilization, nitrogen fixation, indole acetic acid (IAA) production, siderophore and HCN production) in addition to their tolerance to drought conditions for consortia development. Furthermore, the effects of the selected consortium on the growth and development of wheat (<em>Triticum aestivum</em> L.) and maize <em>(Zea mays</em> L.) were assessed in pot experiments under cold semiarid conditions (50 % field capacity). Among 57 bacteria with P and K solubilization, nitrogen fixation, IAA production, siderophore and HCN production, <em>Pseudomonas protegens</em> LPH60, <em>Pseudomonas atacamensis</em> LSH24, <em>Psychrobacter faecalis</em> LUR13, <em>Serratia proteamaculans</em> LUR44, <em>Pseudomonas mucidolens</em> LUR70, and <em>Glutamicibacter bergerei</em> LUR77 exhibited tolerance to drought stress (-0.73 MPa). The colonization of wheat and maize seeds with these drought-tolerant PGP strains resulted in a germination index &gt;150, indicating no phytotoxicity under drought stress. Remarkably, a particular strain, <em>Pseudomonas</em> sp. LPH60 demonstrated antagonistic activity against three phytopathogens <em>Ustilago maydis, Fusarium oxysporum, and Fusarium graminearum</em>. Treatment with the consortium significantly increased the foliage (100 % and 160 %) and root (200 % and 133 %) biomasses of the wheat and maize plants, respectively. Furthermore, whole-genome sequence comparisons of LPH60 and LUR13 with closely related strains revealed genes associated with plant nutrient uptake, phytohormone synthesis, siderophore production, hydrogen cyanide (HCN) synthesis, volatile organic compound production, trehalose and glycine betaine transport, cold shock response, superoxide dismutase activity, and gene clusters for nonribosomal peptide synthases and polyketide synthetases. With their PGP qualities, biocontrol activity, and ability to withstand environmental challenges, the developed consortium represents a promising cold- and drought-active PGP bioinoculant for cereal crops grown in cold semiarid regions.</p></div>","PeriodicalId":18564,"journal":{"name":"Microbiological research","volume":null,"pages":null},"PeriodicalIF":6.1,"publicationDate":"2024-06-26","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141544934","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Antimicrobial peptides: Opportunities and challenges in overcoming resistance 抗菌肽:克服抗药性的机遇与挑战。
IF 6.1 1区 生物学
Microbiological research Pub Date : 2024-06-26 DOI: 10.1016/j.micres.2024.127822
Cezara Bucataru, Corina Ciobanasu
{"title":"Antimicrobial peptides: Opportunities and challenges in overcoming resistance","authors":"Cezara Bucataru,&nbsp;Corina Ciobanasu","doi":"10.1016/j.micres.2024.127822","DOIUrl":"10.1016/j.micres.2024.127822","url":null,"abstract":"<div><p>Antibiotic resistance represents a global health threat, challenging the efficacy of traditional antimicrobial agents and necessitating innovative approaches to combat infectious diseases. Among these alternatives, antimicrobial peptides have emerged as promising candidates against resistant pathogens. Unlike traditional antibiotics with only one target, these peptides can use different mechanisms to destroy bacteria, with low toxicity to mammalian cells compared to many conventional antibiotics. Antimicrobial peptides (AMPs) have encouraging antibacterial properties and are currently employed in the clinical treatment of pathogen infection, cancer, wound healing, cosmetics, or biotechnology. This review summarizes the mechanisms of antimicrobial peptides against bacteria, discusses the mechanisms of drug resistance, the limitations and challenges of AMPs in peptide drug applications for combating drug-resistant bacterial infections, and strategies to enhance their capabilities.</p></div>","PeriodicalId":18564,"journal":{"name":"Microbiological research","volume":null,"pages":null},"PeriodicalIF":6.1,"publicationDate":"2024-06-26","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.sciencedirect.com/science/article/pii/S0944501324002234/pdfft?md5=15be1e23ba5aba936727a8bea185b20e&pid=1-s2.0-S0944501324002234-main.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141580218","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The histone-like nucleoid-structuring protein encoded by the plasmid pMBL6842 regulates both plasmid stability and host physiology of Pseudoalteromonas rubra SCSIO 6842 质粒 pMBL6842 编码的组蛋白样核结构蛋白调节质粒的稳定性和红褐假单胞菌 SCSIO 6842 的宿主生理机能。
IF 6.1 1区 生物学
Microbiological research Pub Date : 2024-06-26 DOI: 10.1016/j.micres.2024.127817
Baiyuan Li , Songwei Ni , Yabo Liu , Jianzhong Lin , Xiaoxue Wang
{"title":"The histone-like nucleoid-structuring protein encoded by the plasmid pMBL6842 regulates both plasmid stability and host physiology of Pseudoalteromonas rubra SCSIO 6842","authors":"Baiyuan Li ,&nbsp;Songwei Ni ,&nbsp;Yabo Liu ,&nbsp;Jianzhong Lin ,&nbsp;Xiaoxue Wang","doi":"10.1016/j.micres.2024.127817","DOIUrl":"10.1016/j.micres.2024.127817","url":null,"abstract":"<div><p>Plasmids orchestrate bacterial adaptation across diverse environments and facilitate lateral gene transfer within bacterial communities. Their presence can perturb host metabolism, creating a competitive advantage for plasmid-free cells. Plasmid stability hinges on efficient replication and partition mechanisms. While plasmids commonly encode histone-like nucleoid-structuring (H-NS) family proteins, the precise influence of plasmid-encoded H-NS proteins on stability remains elusive. In this study, we examined the conjugative plasmid pMBL6842, harboring the <em>hns</em> gene, and observed its positive regulation of <em>parAB</em> transcription, critical for plasmid segregation. Deletion of <em>hns</em> led to rapid plasmid loss, which was remedied by <em>hns</em> complementation. Further investigations unveiled adverse effects of <em>hns</em> overexpression on the bacterial host. Transcriptome analysis revealed <em>hns</em>'s role in regulating numerous bacterial genes, impacting both host growth and swimming motility in the presence of the <em>hns</em> gene. Therefore, our study unveils the multifaceted roles of H-NS in both plasmid stability and host physiology, underscoring its biological significance and paving the way for future inquiries into the involvement of H-NS in horizontal gene transfer events.</p></div>","PeriodicalId":18564,"journal":{"name":"Microbiological research","volume":null,"pages":null},"PeriodicalIF":6.1,"publicationDate":"2024-06-26","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141469447","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Metabolic engineering for compartmentalized biosynthesis of the valuable compounds in Saccharomyces cerevisiae 在酿酒酵母(Saccharomyces cerevisiae)中利用代谢工程进行有价值化合物的分区生物合成。
IF 6.1 1区 生物学
Microbiological research Pub Date : 2024-06-26 DOI: 10.1016/j.micres.2024.127815
Meng-Qi Yin , Kang Xu , Tao Luan , Xiu-Long Kang , Xiao-Yu Yang , Hong-Xing Li , Yun-Hua Hou , Jian-Zhi Zhao , Xiao-Ming Bao
{"title":"Metabolic engineering for compartmentalized biosynthesis of the valuable compounds in Saccharomyces cerevisiae","authors":"Meng-Qi Yin ,&nbsp;Kang Xu ,&nbsp;Tao Luan ,&nbsp;Xiu-Long Kang ,&nbsp;Xiao-Yu Yang ,&nbsp;Hong-Xing Li ,&nbsp;Yun-Hua Hou ,&nbsp;Jian-Zhi Zhao ,&nbsp;Xiao-Ming Bao","doi":"10.1016/j.micres.2024.127815","DOIUrl":"10.1016/j.micres.2024.127815","url":null,"abstract":"<div><p><em>Saccharomyces cerevisiae</em> is commonly used as a microbial cell factory to produce high-value compounds or bulk chemicals due to its genetic operability and suitable intracellular physiological environment. The current biosynthesis pathway for targeted products is primarily rewired in the cytosolic compartment. However, the related precursors, enzymes, and cofactors are frequently distributed in various subcellular compartments, which may limit targeted compounds biosynthesis. To overcome above mentioned limitations, the biosynthesis pathways are localized in different subcellular organelles for product biosynthesis. Subcellular compartmentalization in the production of targeted compounds offers several advantages, mainly relieving competition for precursors from side pathways, improving biosynthesis efficiency in confined spaces, and alleviating the cytotoxicity of certain hydrophobic products. In recent years, subcellular compartmentalization in targeted compound biosynthesis has received extensive attention and has met satisfactory expectations. In this review, we summarize the recent advances in the compartmentalized biosynthesis of the valuable compounds in <em>S. cerevisiae</em>, including terpenoids, sterols, alkaloids, organic acids, and fatty alcohols, etc. Additionally, we describe the characteristics and suitability of different organelles for specific compounds, based on the optimization of pathway reconstruction, cofactor supplementation, and the synthesis of key precursors (metabolites). Finally, we discuss the current challenges and strategies in the field of compartmentalized biosynthesis through subcellular engineering, which will facilitate the production of the complex valuable compounds and offer potential solutions to improve product specificity and productivity in industrial processes.</p></div>","PeriodicalId":18564,"journal":{"name":"Microbiological research","volume":null,"pages":null},"PeriodicalIF":6.1,"publicationDate":"2024-06-26","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141469446","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Lactobacillus rhamnosus GG alleviates radiation-induced intestinal injury by modulating intestinal immunity and remodeling gut microbiota 鼠李糖乳杆菌 GG 可通过调节肠道免疫力和重塑肠道微生物群来减轻辐射引起的肠道损伤。
IF 6.1 1区 生物学
Microbiological research Pub Date : 2024-06-25 DOI: 10.1016/j.micres.2024.127821
Li-Li Zhang , Jia-Ying Xu , Yifei Xing , Pengcheng Wu , Yi-Wen Jin , Wei Wei , Lin Zhao , Jing Yang , Guo-Chong Chen , Li-Qiang Qin
{"title":"Lactobacillus rhamnosus GG alleviates radiation-induced intestinal injury by modulating intestinal immunity and remodeling gut microbiota","authors":"Li-Li Zhang ,&nbsp;Jia-Ying Xu ,&nbsp;Yifei Xing ,&nbsp;Pengcheng Wu ,&nbsp;Yi-Wen Jin ,&nbsp;Wei Wei ,&nbsp;Lin Zhao ,&nbsp;Jing Yang ,&nbsp;Guo-Chong Chen ,&nbsp;Li-Qiang Qin","doi":"10.1016/j.micres.2024.127821","DOIUrl":"10.1016/j.micres.2024.127821","url":null,"abstract":"<div><p>Radiation injury to the intestine is one of the most common complications in patients undergoing abdominal or pelvic cavity radiotherapy. In this study, we investigated the potential protective effect of <em>Lactobacillus rhamnosus GG</em> (LGG) on radiation-induced intestinal injury and its underlying mechanisms. Mice were assigned to a control group, a 10 Gy total abdominal irradiation (TAI) group, or a group pretreated with 10<sup>8</sup> CFU LGG for three days before TAI. Small intestine and gut microbiota were analyzed 3.5 days post-exposure. LGG intervention improved intestinal structure, reduced jejunal DNA damage, and inhibited the inflammatory cGAS/STING pathway. Furthermore, LGG reduced M1 proinflammatory macrophage and CD8+ T cell infiltration, restoring the balance between Th17 and Treg cells in the inflamed jejunum. LGG also partially restored the gut microbiota. These findings suggest the possible therapeutic radioprotective effect of probiotics LGG in alleviating radiation-induced intestinal injury by maintaining immune homeostasis and reshaping gut microbiota.</p></div>","PeriodicalId":18564,"journal":{"name":"Microbiological research","volume":null,"pages":null},"PeriodicalIF":6.1,"publicationDate":"2024-06-25","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141469367","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Cross-protection and cross-feeding between Enterobacter and Comamonas promoting their coexistence and cadmium tolerance in Oryza sativa L. 肠杆菌和彗星菌之间的交叉保护和交叉取食促进了它们在大米中的共存和镉耐受性
IF 6.1 1区 生物学
Microbiological research Pub Date : 2024-06-24 DOI: 10.1016/j.micres.2024.127806
Xing Wang, Naijiang Guo, Yao Zhang, Gejiao Wang, Kaixiang Shi
{"title":"Cross-protection and cross-feeding between Enterobacter and Comamonas promoting their coexistence and cadmium tolerance in Oryza sativa L.","authors":"Xing Wang,&nbsp;Naijiang Guo,&nbsp;Yao Zhang,&nbsp;Gejiao Wang,&nbsp;Kaixiang Shi","doi":"10.1016/j.micres.2024.127806","DOIUrl":"10.1016/j.micres.2024.127806","url":null,"abstract":"<div><p>Metabolic cross-feeding is a pervasive interaction between bacteria to acquire novel phenotypes. However, our current understanding of the survival mechanism for cross-feeding in cocultured bacterial biofilms under heavy-metal conditions remains limited. Herein, we found that <em>Comamonas</em> sp. A23 produces L-phenylalanine to activate the L-phenylalanine degradation pathway in <em>Enterobacter</em> sp. A11, enhancing biofilm formation and cadmium [Cd(II)] immobilization in A11. The genes responsible for L-phenylalanine-degradation (<em>paaK</em>) and cell attachment and aggregation (<em>csgAD</em>) are essential for biofilm formation and Cd(II) immobilization in A11 induced by L-phenylalanine. The augmentation of A11 biofilms, in turn, protects A23 under Cd(II) and H<sub>2</sub>O<sub>2</sub> stresses. The plant-based experiments demonstrate that the induction of two rice Cd(II) transporters, <em>OsCOPT4</em> and <em>OsBCP1</em>, by A11 and A23 enhances rice resistance against Cd(II) and H<sub>2</sub>O<sub>2</sub> stresses. Overall, our findings unveil the mutual dependence between bacteria and rice on L-phenylalanine cross-feeding for survival under abiotic stress.</p></div>","PeriodicalId":18564,"journal":{"name":"Microbiological research","volume":null,"pages":null},"PeriodicalIF":6.1,"publicationDate":"2024-06-24","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141457923","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
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