{"title":"A review and new perspective on oral bacteriophages: manifestations in the ecology of oral diseases.","authors":"Xinyu Guo, Xiaowan Wang, Jia Shi, Jiayi Ren, Jumei Zeng, Jinquan Li, Yuqing Li","doi":"10.1080/20002297.2024.2344272","DOIUrl":"https://doi.org/10.1080/20002297.2024.2344272","url":null,"abstract":"<p><strong>Objective: </strong>To explore the manifestations of bacteriophages in different oral disease ecologies, including periodontal diseases, dental caries, endodontic infections, and oral cancer, as well as to propel phage therapy for safer and more effective clinical application in the field of dentistry.</p><p><strong>Methods: </strong>In this literature review, we outlined interactions between bacteriophages, bacteria and even oral cells in the oral ecosystem, especially in disease states. We also analyzed the current status and future prospects of phage therapy in the perspective of different oral diseases.</p><p><strong>Results: </strong>Various oral bacteriophages targeting at periodontal pathogens as <i>Porphyromonas gingivalis</i>, <i>Fusobacterium nucleatum</i>, <i>Treponema denticola</i> and <i>Aggregatibacter actinomycetemcomitans</i>, cariogenic pathogen <i>Streptococcus mutans</i>, endodontic pathogen <i>Enterococcus faecalis</i> were predicted or isolated, providing promising options for phage therapy. In the realm of oral cancer, aside from displaying tumor antigens or participating in tumor-targeted therapies, phage-like particle vaccines demonstrated the potential to prevent oral infections caused by human papillomaviruses (HPVs) associated with head-and-neck cancers.</p><p><strong>Conclusion: </strong>Due to their intricate interactions with bacteria and oral cells, bacteriophages are closely linked to the progression and regression of diverse oral diseases. And there is an urgent need for research to explore additional possibilities of bacteriophages in the management of oral diseases.</p>","PeriodicalId":16598,"journal":{"name":"Journal of Oral Microbiology","volume":"16 1","pages":"2344272"},"PeriodicalIF":4.5,"publicationDate":"2024-05-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11064738/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140856172","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Characterization of tongue coating microbiome from patients with colorectal cancer.","authors":"Qubo Chen, Xiaoting Huang, Haiyan Zhang, Xuanting Jiang, Xuan Zeng, Wanhua Li, Hairong Su, Ying Chen, Fengye Lin, Man Li, Xiangyu Gu, Huihui Jin, Ruohan Wang, Dechang Diao, Wei Wang, Jin Li, Sufen Wei, Weizheng Zhang, Wofeng Liu, Zhiping Huang, Yusheng Deng, Wen Luo, Zuofeng Liu, Beiping Zhang","doi":"10.1080/20002297.2024.2344278","DOIUrl":"https://doi.org/10.1080/20002297.2024.2344278","url":null,"abstract":"<p><strong>Background: </strong>Tongue coating microbiota has aroused particular interest in profiling oral and digestive system cancers. However, little is known on the relationship between tongue coating microbiome and colorectal cancer (CRC).</p><p><strong>Methods: </strong>Metagenomic shotgun sequencing was performed on tongue coating samples collected from 30 patients with CRC, 30 patients with colorectal polyps (CP), and 30 healthy controls (HC). We further validated the potential of the tongue coating microbiota to predict the CRC by a random forest model.</p><p><strong>Results: </strong>We found a greater species diversity in CRC samples, and the nucleoside and nucleotide biosynthesis pathway was more apparent in the CRC group. Importantly, various species across participants jointly shaped three distinguishable fur types.The tongue coating microbiome profiling data gave an area under the receiver operating characteristic curve (AUC) of 0.915 in discriminating CRC patients from control participants; species such as <i>Atopobium rimae, Streptococcus sanguinis</i>, and <i>Prevotella oris</i> aided differentiation of CRC patients from healthy participants.</p><p><strong>Conclusion: </strong>These results elucidate the use of tongue coating microbiome in CRC patients firstly, and the fur-types observed contribute to a better understanding of the microbial community in human. Furthermore, the tongue coating microbiota-based biomarkers provide a valuable reference for CRC prediction and diagnosis.</p>","PeriodicalId":16598,"journal":{"name":"Journal of Oral Microbiology","volume":"16 1","pages":"2344278"},"PeriodicalIF":4.5,"publicationDate":"2024-04-26","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11057396/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140863347","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Noora Keski-Säntti, Elin Waltimo, Antti Mäkitie, Jaana Hagström, Maria Söderlund-Venermo, Timo Atula, Caj Haglund, Saku T Sinkkonen, Maria Jauhiainen
{"title":"Viral DNA in submandibular gland tissue with an inflammatory disorder.","authors":"Noora Keski-Säntti, Elin Waltimo, Antti Mäkitie, Jaana Hagström, Maria Söderlund-Venermo, Timo Atula, Caj Haglund, Saku T Sinkkonen, Maria Jauhiainen","doi":"10.1080/20002297.2024.2345941","DOIUrl":"10.1080/20002297.2024.2345941","url":null,"abstract":"<p><strong>Background: </strong>The etiology behind different types of chronic sialadenitis (CS), some of which exhibit IgG4 overexpression, is unknown. Further, IgG4-related disease (IgG4-RD) commonly affects the submandibular gland, but its relationship to IgG4-overexpressing CS, and the antigen triggering IgG4 overexpression, remain unknown.</p><p><strong>Materials and methods: </strong>By qPCR, we assessed the presence of 21 DNA-viruses causing IgG4 overexpression in submandibular gland tissue from patients with IgG4-positive and IgG4-negative CS. Healthy submandibular glands and glands with sialolithiasis without CS were used as controls. We examined the distribution of HHV-7, HHV-6B and B19V DNA, within virus PCR-positive tissues with RNAscope in-situ hybridization (RISH).</p><p><strong>Results: </strong>We detected DNA from seven viruses in 48/61 samples. EBV DNA was more prevalent within the IgG4-positive samples (6/29; 21%) than the IgG4-negative ones (1/19; 5.3%). B19V DNA was more prevalent within the IgG4-negative samples (5/19; 26%) than the IgG4-positive ones (4/29; 14%). The differences in virus prevalence were not statistically significant. Of the IgG4-RD samples (<i>n</i> = 3) one contained HHV-6B DNA. RISH only showed signals of HHV-7.</p><p><strong>Conclusions: </strong>None of the studied viruses are implicated as triggering IgG4-overexpression in CS. Although our results do not confirm viral etiology in the examined conditions, they provide valuable information on the prevalence of viruses in both diseased and healthy submandibular gland tissue.</p>","PeriodicalId":16598,"journal":{"name":"Journal of Oral Microbiology","volume":"16 1","pages":"2345941"},"PeriodicalIF":4.5,"publicationDate":"2024-04-26","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11073405/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140859158","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Hyejung Han, Hyo-Jung Lee, Keun-Suh Kim, Jin Chung, Hee Sam Na
{"title":"Comparison of the performance of MiSeq and NovaSeq in oral microbiome study","authors":"Hyejung Han, Hyo-Jung Lee, Keun-Suh Kim, Jin Chung, Hee Sam Na","doi":"10.1080/20002297.2024.2344293","DOIUrl":"https://doi.org/10.1080/20002297.2024.2344293","url":null,"abstract":"Next generation sequencing is commonly used to characterize the microbiome structure. MiSeq is most commonly used to analyze the microbiome due to its relatively long read length. Illumina also int...","PeriodicalId":16598,"journal":{"name":"Journal of Oral Microbiology","volume":"15 1","pages":""},"PeriodicalIF":4.5,"publicationDate":"2024-04-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140611937","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Characterization of the unique oral microbiome of children harboring Helicobacter pylori in the oral cavity","authors":"Yuko Ogaya, Tamami Kadota, Masakazu Hamada, Ryota Nomura, Kazuhiko Nakano","doi":"10.1080/20002297.2024.2339158","DOIUrl":"https://doi.org/10.1080/20002297.2024.2339158","url":null,"abstract":"Helicobacter pylori infection is acquired in childhood via the oral cavity, although its relationship with the characteristics of the oral microbiome has not been elucidated. In this study, we perf...","PeriodicalId":16598,"journal":{"name":"Journal of Oral Microbiology","volume":"1 1","pages":""},"PeriodicalIF":4.5,"publicationDate":"2024-04-11","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140566560","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Unveiling the complexity of early childhood caries: Candida albicans and Streptococcus mutans cooperative strategies in carbohydrate metabolism and virulence","authors":"Pingping Jin, Lu Wang, Daozhen Chen, Yu Chen","doi":"10.1080/20002297.2024.2339161","DOIUrl":"https://doi.org/10.1080/20002297.2024.2339161","url":null,"abstract":"To explore the mechanisms underlying the virulence changes in early childhood caries (ECC) caused by Candida albicans (C. albicans) and Streptococcus mutans (S. mutans), with a focus on carbohydrat...","PeriodicalId":16598,"journal":{"name":"Journal of Oral Microbiology","volume":"52 1","pages":""},"PeriodicalIF":4.5,"publicationDate":"2024-04-10","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140566693","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Andrea Bedini, Filippo Medioli, Altea Gallerani, Irene Venturelli, Giacomo Franceschi, Marianna Meschiari, Erica Franceschini, Giacomo Maria Lima, Mario Sarti, Cristina Mussini
{"title":"A rare case of necrotizing fasciitis of the leg in an intravenous drug user caused by Prevotella denticola","authors":"Andrea Bedini, Filippo Medioli, Altea Gallerani, Irene Venturelli, Giacomo Franceschi, Marianna Meschiari, Erica Franceschini, Giacomo Maria Lima, Mario Sarti, Cristina Mussini","doi":"10.1080/20002297.2024.2334545","DOIUrl":"https://doi.org/10.1080/20002297.2024.2334545","url":null,"abstract":"Intravenous drug users (IDUs) have a high risk of developing skin and soft tissue infections such as erysipelas, abscesses, and less frequently necrotizing fasciitis (NF) or gas gangrene. Rarely, t...","PeriodicalId":16598,"journal":{"name":"Journal of Oral Microbiology","volume":"28 1","pages":""},"PeriodicalIF":4.5,"publicationDate":"2024-03-29","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140326004","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Xiaoting Shi, Jinwen Liu, Ze Lu, Jiabo Li, Shuwei Zhang, Qian Li, Fengxue Geng, Yaping Pan
{"title":"Role of ferroptosis in Porphyromonas gingivalis-induced impairment of epithelial junction","authors":"Xiaoting Shi, Jinwen Liu, Ze Lu, Jiabo Li, Shuwei Zhang, Qian Li, Fengxue Geng, Yaping Pan","doi":"10.1080/20002297.2024.2334578","DOIUrl":"https://doi.org/10.1080/20002297.2024.2334578","url":null,"abstract":"This study aims to clarify the effect of ferroptosis by P. gingivalis on periodontal epithelium impairment and potential mechanisms.The expression of epithelial junction proteins (CDH1, OCLN, ZO-1)...","PeriodicalId":16598,"journal":{"name":"Journal of Oral Microbiology","volume":"33 1","pages":""},"PeriodicalIF":4.5,"publicationDate":"2024-03-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140314166","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"The antimicrobial effect of different vitamin D compounds on Streptococcus mutans and their impact on glycosyltransferase expression","authors":"Marta Picolo, Abish Stephen, Aylin Baysan","doi":"10.1080/20002297.2024.2327758","DOIUrl":"https://doi.org/10.1080/20002297.2024.2327758","url":null,"abstract":"Streptococcus mutans is a virulent microorganism associated with dental caries. This in vitro study aimed to investigate the antimicrobial effects of Cholecalciferol (D3) and Doxercalciferol (D2), ...","PeriodicalId":16598,"journal":{"name":"Journal of Oral Microbiology","volume":"32 1","pages":""},"PeriodicalIF":4.5,"publicationDate":"2024-03-27","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140314313","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Nan Feng, Xuan Han, Da Peng, Fengxue Geng, Qian Li, Chunlin Pan, Hongyan Wang, Yaping Pan, Lisi Tan
{"title":"P. gingivalis alters lung microbiota and aggravates disease severity of COPD rats by up-regulating Hsp90α/MLKL","authors":"Nan Feng, Xuan Han, Da Peng, Fengxue Geng, Qian Li, Chunlin Pan, Hongyan Wang, Yaping Pan, Lisi Tan","doi":"10.1080/20002297.2024.2334588","DOIUrl":"https://doi.org/10.1080/20002297.2024.2334588","url":null,"abstract":"Epidemiological evidence has confirmed that periodontitis is an essential and independent risk factor of chronic obstructive pulmonary disease (COPD). Porphyromonas gingivalis, a major pathogen imp...","PeriodicalId":16598,"journal":{"name":"Journal of Oral Microbiology","volume":"57 1","pages":""},"PeriodicalIF":4.5,"publicationDate":"2024-03-27","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140314415","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}