Journal of Biomedical Optics最新文献

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Utilizing convolutional neural networks for discriminating cancer and stromal cells in three-dimensional cell culture images with nuclei counterstain. 利用卷积神经网络在带细胞核染色的三维细胞培养图像中区分癌细胞和基质细胞。
IF 3 3区 医学
Journal of Biomedical Optics Pub Date : 2024-06-01 Epub Date: 2024-08-24 DOI: 10.1117/1.JBO.29.S2.S22710
Huu Tuan Nguyen, Nicholas Pietraszek, Sarah E Shelton, Kwabena Arthur, Roger D Kamm
{"title":"Utilizing convolutional neural networks for discriminating cancer and stromal cells in three-dimensional cell culture images with nuclei counterstain.","authors":"Huu Tuan Nguyen, Nicholas Pietraszek, Sarah E Shelton, Kwabena Arthur, Roger D Kamm","doi":"10.1117/1.JBO.29.S2.S22710","DOIUrl":"10.1117/1.JBO.29.S2.S22710","url":null,"abstract":"<p><strong>Significance: </strong>Accurate cell segmentation and classification in three-dimensional (3D) images are vital for studying live cell behavior and drug responses in 3D tissue culture. Evaluating diverse cell populations in 3D cell culture over time necessitates non-toxic staining methods, as specific fluorescent tags may not be suitable, and immunofluorescence staining can be cytotoxic for prolonged live cell cultures.</p><p><strong>Aim: </strong>We aim to perform machine learning-based cell classification within a live heterogeneous cell culture population grown in a 3D tissue culture relying only on reflectance, transmittance, and nuclei counterstained images obtained by confocal microscopy.</p><p><strong>Approach: </strong>In this study, we employed a supervised convolutional neural network (CNN) to classify tumor cells and fibroblasts within 3D-grown spheroids. These cells are first segmented using the marker-controlled watershed image processing method. Training data included nuclei counterstaining, reflectance, and transmitted light images, with stained fibroblast and tumor cells as ground-truth labels.</p><p><strong>Results: </strong>Our results demonstrate the successful marker-controlled watershed segmentation of 84% of spheroid cells into single cells. We achieved a median accuracy of 67% (95% confidence interval of the median is 65-71%) in identifying cell types. We also recapitulate the original 3D images using the CNN-classified cells to visualize the original 3D-stained image's cell distribution.</p><p><strong>Conclusion: </strong>This study introduces a non-invasive toxicity-free approach to 3D cell culture evaluation, combining machine learning with confocal microscopy, opening avenues for advanced cell studies.</p>","PeriodicalId":15264,"journal":{"name":"Journal of Biomedical Optics","volume":"29 Suppl 2","pages":"S22710"},"PeriodicalIF":3.0,"publicationDate":"2024-06-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11344342/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142055707","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Functional hemodynamic imaging markers for the prediction of pathological outcomes in breast cancer patients treated with neoadjuvant chemotherapy. 预测接受新辅助化疗的乳腺癌患者病理结果的功能性血液动力学成像标记。
IF 3 3区 医学
Journal of Biomedical Optics Pub Date : 2024-06-01 Epub Date: 2024-05-11 DOI: 10.1117/1.JBO.29.6.066001
Bin Deng, Ailis Muldoon, Jayne Cormier, Nathaniel D Mercaldo, Elizabeth Niehoff, Natalie Moffett, Mansi A Saksena, Steven J Isakoff, Stefan A Carp
{"title":"Functional hemodynamic imaging markers for the prediction of pathological outcomes in breast cancer patients treated with neoadjuvant chemotherapy.","authors":"Bin Deng, Ailis Muldoon, Jayne Cormier, Nathaniel D Mercaldo, Elizabeth Niehoff, Natalie Moffett, Mansi A Saksena, Steven J Isakoff, Stefan A Carp","doi":"10.1117/1.JBO.29.6.066001","DOIUrl":"10.1117/1.JBO.29.6.066001","url":null,"abstract":"<p><strong>Significance: </strong>Achieving pathologic complete response (pCR) after neoadjuvant chemotherapy (NACT) is a significant predictor of increased likelihood of survival in breast cancer patients. Early prediction of pCR is of high clinical value as it could allow personalized adjustment of treatment regimens in non-responding patients for improved outcomes.</p><p><strong>Aim: </strong>We aim to assess the association between hemoglobin-based functional imaging biomarkers derived from diffuse optical tomography (DOT) and the pathological outcome represented by pCR at different timepoints along the course of NACT.</p><p><strong>Approach: </strong>Twenty-two breast cancer patients undergoing NACT were enrolled in a multimodal DOT and X-ray digital breast tomosynthesis (DBT) imaging study in which their breasts were imaged at different compression levels. Logistic regressions were used to study the associations between DOT-derived imaging markers evaluated after the first and second cycles of chemotherapy, respectively, with pCR status determined after the conclusion of NACT at the time of surgery. Receiver operating characteristic curve analysis was also used to explore the predictive performance of selected DOT-derived markers.</p><p><strong>Results: </strong>Normalized tumor HbT under half compression was significantly lower in the pCR group compared to the non-pCR group after two chemotherapy cycles (<math><mrow><mi>p</mi><mo>=</mo><mn>0.042</mn></mrow></math>). In addition, the change in normalized tumor <math><mrow><msub><mi>StO</mi><mn>2</mn></msub></mrow></math> upon reducing compression from full to half mammographic force was identified as another potential indicator of pCR at an earlier time point, i.e., after the first chemo cycle (<math><mrow><mi>p</mi><mo>=</mo><mn>0.038</mn></mrow></math>). Exploratory predictive assessments showed that AUCs using DOT-derived functional imaging markers as predictors reach as high as 0.75 and 0.71, respectively, after the first and second chemo cycle, compared to AUCs of 0.50 and 0.53 using changes in tumor size measured on DBT and MRI.</p><p><strong>Conclusions: </strong>These findings suggest that breast DOT could be used to assist response assessment in women undergoing NACT, a critical but unmet clinical need, and potentially enable personalized adjustments of treatment regimens.</p>","PeriodicalId":15264,"journal":{"name":"Journal of Biomedical Optics","volume":"29 6","pages":"066001"},"PeriodicalIF":3.0,"publicationDate":"2024-06-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11088438/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140911842","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Wearable laser Doppler flowmetry for non-invasive assessment of diabetic foot microcirculation: methodological considerations and clinical implications. 用于糖尿病足微循环无创评估的可穿戴激光多普勒血流测量仪:方法学考虑因素和临床意义。
IF 3 3区 医学
Journal of Biomedical Optics Pub Date : 2024-06-01 Epub Date: 2024-05-11 DOI: 10.1117/1.JBO.29.6.065001
Xing-Xi Hu, Xiao-Man Xing, Zhen-Ming Zhang, Chao Zhang, Li Chen, Jia-Zhang Huang, Xu Wang, Xin Ma, Xiang Geng
{"title":"Wearable laser Doppler flowmetry for non-invasive assessment of diabetic foot microcirculation: methodological considerations and clinical implications.","authors":"Xing-Xi Hu, Xiao-Man Xing, Zhen-Ming Zhang, Chao Zhang, Li Chen, Jia-Zhang Huang, Xu Wang, Xin Ma, Xiang Geng","doi":"10.1117/1.JBO.29.6.065001","DOIUrl":"10.1117/1.JBO.29.6.065001","url":null,"abstract":"<p><strong>Significance: </strong>Type 2 diabetes mellitus (T2DM) is a global health concern with significant implications for vascular health. The current evaluation methods cannot achieve effective, portable, and quantitative evaluation of foot microcirculation.</p><p><strong>Aim: </strong>We aim to use a wearable device laser Doppler flowmetry (LDF) to evaluate the foot microcirculation of T2DM patients at rest.</p><p><strong>Approach: </strong>Eleven T2DM patients and twelve healthy subjects participated in this study. The wearable LDF was used to measure the blood flows (BFs) for regions of the first metatarsal head (M1), fifth metatarsal head (M5), heel, and dorsal foot. Typical wavelet analysis was used to decompose the five individual control mechanisms: endothelial, neurogenic, myogenic, respiratory, and heart components. The mean BF and sample entropy (SE) were calculated, and the differences between diabetic patients and healthy adults and among the four regions were compared.</p><p><strong>Results: </strong>Diabetic patients showed significantly reduced mean BF in the neurogenic (<math><mrow><mi>p</mi><mo>=</mo><mn>0.044</mn></mrow></math>) and heart (<math><mrow><mi>p</mi><mo>=</mo><mn>0.001</mn></mrow></math>) components at the M1 and M5 regions (<math><mrow><mi>p</mi><mo>=</mo><mn>0.025</mn></mrow></math>) compared with healthy adults. Diabetic patients had significantly lower SE in the neurogenic (<math><mrow><mi>p</mi><mo>=</mo><mn>0.049</mn></mrow></math>) and myogenic (<math><mrow><mi>p</mi><mo>=</mo><mn>0.032</mn></mrow></math>) components at the M1 region, as well as in the endothelial (<math><mrow><mi>p</mi><mo><</mo><mn>0.001</mn></mrow></math>) component at the M5 region and in the myogenic component at the dorsal foot (<math><mrow><mi>p</mi><mo>=</mo><mn>0.007</mn></mrow></math>), compared with healthy adults. The SE in the myogenic component at the dorsal foot was lower than at the M5 region (<math><mrow><mi>p</mi><mo>=</mo><mn>0.050</mn></mrow></math>) and heel area (<math><mrow><mi>p</mi><mo>=</mo><mn>0.041</mn></mrow></math>). Similarly, the SE in the heart component at the dorsal foot was lower than at the M5 region (<math><mrow><mi>p</mi><mo>=</mo><mn>0.017</mn></mrow></math>) and heel area (<math><mrow><mi>p</mi><mo>=</mo><mn>0.028</mn></mrow></math>) in diabetic patients.</p><p><strong>Conclusions: </strong>This study indicated the potential of using the novel wearable LDF device for tracking vascular complications and implementing targeted interventions in T2DM patients.</p>","PeriodicalId":15264,"journal":{"name":"Journal of Biomedical Optics","volume":"29 6","pages":"065001"},"PeriodicalIF":3.0,"publicationDate":"2024-06-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11088439/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140911846","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Comprehensive framework of GPU-accelerated image reconstruction for photoacoustic computed tomography. 用于光声计算机断层扫描的 GPU 加速图像重建综合框架。
IF 3 3区 医学
Journal of Biomedical Optics Pub Date : 2024-06-01 Epub Date: 2024-06-06 DOI: 10.1117/1.JBO.29.6.066006
Yibing Wang, Changhui Li
{"title":"Comprehensive framework of GPU-accelerated image reconstruction for photoacoustic computed tomography.","authors":"Yibing Wang, Changhui Li","doi":"10.1117/1.JBO.29.6.066006","DOIUrl":"10.1117/1.JBO.29.6.066006","url":null,"abstract":"<p><strong>Significance: </strong>Photoacoustic computed tomography (PACT) is a promising non-invasive imaging technique for both life science and clinical implementations. To achieve fast imaging speed, modern PACT systems have equipped arrays that have hundreds to thousands of ultrasound transducer (UST) elements, and the element number continues to increase. However, large number of UST elements with parallel data acquisition could generate a massive data size, making it very challenging to realize fast image reconstruction. Although several research groups have developed GPU-accelerated method for PACT, there lacks an explicit and feasible step-by-step description of GPU-based algorithms for various hardware platforms.</p><p><strong>Aim: </strong>In this study, we propose a comprehensive framework for developing GPU-accelerated PACT image reconstruction (GPU-accelerated photoacoustic computed tomography), to help the research community to grasp this advanced image reconstruction method.</p><p><strong>Approach: </strong>We leverage widely accessible open-source parallel computing tools, including Python multiprocessing-based parallelism, Taichi Lang for Python, CUDA, and possible other backends. We demonstrate that our framework promotes significant performance of PACT reconstruction, enabling faster analysis and real-time applications. Besides, we also described how to realize parallel computing on various hardware configurations, including multicore CPU, single GPU, and multiple GPUs platform.</p><p><strong>Results: </strong>Notably, our framework can achieve an effective rate of <math><mrow><mo>∼</mo> <mn>871</mn></mrow> </math> times when reconstructing extremely large-scale three-dimensional PACT images on a dual-GPU platform compared to a 24-core workstation CPU. In this paper, we share example codes via GitHub.</p><p><strong>Conclusions: </strong>Our approach allows for easy adoption and adaptation by the research community, fostering implementations of PACT for both life science and medicine.</p>","PeriodicalId":15264,"journal":{"name":"Journal of Biomedical Optics","volume":"29 6","pages":"066006"},"PeriodicalIF":3.0,"publicationDate":"2024-06-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11155389/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141283837","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Tutorial on methods for estimation of optical absorption and scattering properties of tissue. 组织光学吸收和散射特性估算方法教程。
IF 3 3区 医学
Journal of Biomedical Optics Pub Date : 2024-06-01 Epub Date: 2024-06-11 DOI: 10.1117/1.JBO.29.6.060801
Ran Tao, Janek Gröhl, Lina Hacker, Antonio Pifferi, Darren Roblyer, Sarah E Bohndiek
{"title":"Tutorial on methods for estimation of optical absorption and scattering properties of tissue.","authors":"Ran Tao, Janek Gröhl, Lina Hacker, Antonio Pifferi, Darren Roblyer, Sarah E Bohndiek","doi":"10.1117/1.JBO.29.6.060801","DOIUrl":"10.1117/1.JBO.29.6.060801","url":null,"abstract":"<p><strong>Significance: </strong>The estimation of tissue optical properties using diffuse optics has found a range of applications in disease detection, therapy monitoring, and general health care. Biomarkers derived from the estimated optical absorption and scattering coefficients can reflect the underlying progression of many biological processes in tissues.</p><p><strong>Aim: </strong>Complex light-tissue interactions make it challenging to disentangle the absorption and scattering coefficients, so dedicated measurement systems are required. We aim to help readers understand the measurement principles and practical considerations needed when choosing between different estimation methods based on diffuse optics.</p><p><strong>Approach: </strong>The estimation methods can be categorized as: steady state, time domain, time frequency domain (FD), spatial domain, and spatial FD. The experimental measurements are coupled with models of light-tissue interactions, which enable inverse solutions for the absorption and scattering coefficients from the measured tissue reflectance and/or transmittance.</p><p><strong>Results: </strong>The estimation of tissue optical properties has been applied to characterize a variety of <i>ex vivo</i> and <i>in vivo</i> tissues, as well as tissue-mimicking phantoms. Choosing a specific estimation method for a certain application has to trade-off its advantages and limitations.</p><p><strong>Conclusion: </strong>Optical absorption and scattering property estimation is an increasingly important and accessible approach for medical diagnosis and health monitoring.</p>","PeriodicalId":15264,"journal":{"name":"Journal of Biomedical Optics","volume":"29 6","pages":"060801"},"PeriodicalIF":3.0,"publicationDate":"2024-06-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11166171/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141306038","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Assessing changes in regional cerebral hemodynamics in adults with a high-density full-head coverage time-resolved near-infrared spectroscopy device. 利用高密度全头部覆盖时间分辨近红外光谱仪评估成人区域脑血流动力学的变化。
IF 3.5 3区 医学
Journal of Biomedical Optics Pub Date : 2024-06-01 Epub Date: 2024-05-03 DOI: 10.1117/1.JBO.29.S3.S33302
Farah Kamar, Leena N Shoemaker, Rasa Eskandari, Daniel Milej, Darren Drosdowech, John M Murkin, Keith St Lawrence, Jason Chui, Mamadou Diop
{"title":"Assessing changes in regional cerebral hemodynamics in adults with a high-density full-head coverage time-resolved near-infrared spectroscopy device.","authors":"Farah Kamar, Leena N Shoemaker, Rasa Eskandari, Daniel Milej, Darren Drosdowech, John M Murkin, Keith St Lawrence, Jason Chui, Mamadou Diop","doi":"10.1117/1.JBO.29.S3.S33302","DOIUrl":"https://doi.org/10.1117/1.JBO.29.S3.S33302","url":null,"abstract":"<p><strong>Significance: </strong>Cerebral oximeters have the potential to detect abnormal cerebral blood oxygenation to allow for early intervention. However, current commercial systems have two major limitations: (1) spatial coverage of only the frontal region, assuming that surgery-related hemodynamic effects are global and (2) susceptibility to extracerebral signal contamination inherent to continuous-wave near-infrared spectroscopy (NIRS).</p><p><strong>Aim: </strong>This work aimed to assess the feasibility of a high-density, time-resolved (tr) NIRS device (Kernel Flow) to monitor regional oxygenation changes across the cerebral cortex during surgery.</p><p><strong>Approach: </strong>The Flow system was assessed using two protocols. First, digital carotid compression was applied to healthy volunteers to cause a rapid oxygenation decrease across the ipsilateral hemisphere without affecting the contralateral side. Next, the system was used on patients undergoing shoulder surgery to provide continuous monitoring of cerebral oxygenation. In both protocols, the improved depth sensitivity of trNIRS was investigated by applying moment analysis. A dynamic wavelet filtering approach was also developed to remove observed temperature-induced signal drifts.</p><p><strong>Results: </strong>In the first protocol (<math><mrow><mn>28</mn><mo>±</mo><mn>5</mn></mrow></math> years; five females, five males), hair significantly impacted regional sensitivity; however, the enhanced depth sensitivity of trNIRS was able to separate brain and scalp responses in the frontal region. Regional sensitivity was improved in the clinical study given the age-related reduction in hair density of the patients (<math><mrow><mn>65</mn><mo>±</mo><mn>15</mn></mrow></math> years; 14 females, 13 males). In five patients who received phenylephrine to treat hypotension, different scalp and brain oxygenation responses were apparent, although no regional differences were observed.</p><p><strong>Conclusions: </strong>The Kernel Flow has promise as an intraoperative neuromonitoring device. Although regional sensitivity was affected by hair color and density, enhanced depth sensitivity of trNIRS was able to resolve differences in scalp and brain oxygenation responses in both protocols.</p>","PeriodicalId":15264,"journal":{"name":"Journal of Biomedical Optics","volume":"29 Suppl 3","pages":"S33302"},"PeriodicalIF":3.5,"publicationDate":"2024-06-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11068267/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140849033","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Real-time identification of life-threatening necrotizing soft-tissue infections using indocyanine green fluorescence imaging. 利用吲哚菁绿荧光成像技术实时识别危及生命的坏死性软组织感染。
IF 3 3区 医学
Journal of Biomedical Optics Pub Date : 2024-06-01 Epub Date: 2024-05-14 DOI: 10.1117/1.JBO.29.6.066003
Gabrielle S Ray, Samuel S Streeter, Logan M Bateman, Jonathan Thomas Elliott, Eric R Henderson
{"title":"Real-time identification of life-threatening necrotizing soft-tissue infections using indocyanine green fluorescence imaging.","authors":"Gabrielle S Ray, Samuel S Streeter, Logan M Bateman, Jonathan Thomas Elliott, Eric R Henderson","doi":"10.1117/1.JBO.29.6.066003","DOIUrl":"10.1117/1.JBO.29.6.066003","url":null,"abstract":"<p><strong>Significance: </strong>Necrotizing soft-tissue infections (NSTIs) are life-threatening infections with a cumulative case fatality rate of 21%. The initial presentation of an NSTI is non-specific, frequently leading to misdiagnosis and delays in care. No current strategies yield an accurate, real-time diagnosis of an NSTI.</p><p><strong>Aim: </strong>A first-in-kind, observational, clinical pilot study tested the hypothesis that measurable fluorescence signal voids occur in NSTI-affected tissues following intravenous administration and imaging of perfusion-based indocyanine green (ICG) fluorescence. This hypothesis is based on the established knowledge that NSTI is associated with local microvascular thrombosis.</p><p><strong>Approach: </strong>Adult patients presenting to the Emergency Department of a tertiary care medical center at high risk for NSTI were prospectively enrolled and imaged with a commercial fluorescence imager. Single-frame fluorescence snapshot and first-pass perfusion kinetic parameters-ingress slope (IS), time-to-peak (TTP) intensity, and maximum fluorescence intensity (IMAX)-were quantified using a dynamic contrast-enhanced fluorescence imaging technique. Clinical variables (comorbidities, blood laboratory values), fluorescence parameters, and fluorescence signal-to-background ratios (SBRs) were compared to final infection diagnosis.</p><p><strong>Results: </strong>Fourteen patients were enrolled and imaged (six NSTI, six cellulitis, one diabetes mellitus-associated gangrene, and one osteomyelitis). Clinical variables demonstrated no statistically significant differences between NSTI and non-NSTI patient groups (<math><mrow><mi>p</mi><mtext>-value</mtext><mo>≥</mo><mn>0.22</mn></mrow></math>). All NSTI cases exhibited prominent fluorescence signal voids in affected tissues, including tissue features not visible to the naked eye. All cellulitis cases exhibited a hyperemic response with increased fluorescence and no distinct signal voids. Median lesion-to-background tissue SBRs based on snapshot, IS, TTP, and IMAX parameter maps ranged from 3.2 to 9.1, 2.2 to 33.8, 1.0 to 7.5, and 1.5 to 12.7, respectively, for the NSTI patient group. All fluorescence parameters except TTP demonstrated statistically significant differences between NSTI and cellulitis patient groups (<math><mrow><mi>p</mi><mtext>-value</mtext><mo><</mo><mn>0.05</mn></mrow></math>).</p><p><strong>Conclusions: </strong>Real-time, accurate discrimination of NSTIs compared with non-necrotizing infections may be possible with perfusion-based ICG fluorescence imaging.</p>","PeriodicalId":15264,"journal":{"name":"Journal of Biomedical Optics","volume":"29 6","pages":"066003"},"PeriodicalIF":3.0,"publicationDate":"2024-06-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11092151/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140922370","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Imperfect refractive index matching in scanning laser optical tomography and a method for digital correction. 扫描激光光学层析成像中的不完美折射率匹配和数字校正方法。
IF 3 3区 医学
Journal of Biomedical Optics Pub Date : 2024-06-01 Epub Date: 2024-05-15 DOI: 10.1117/1.JBO.29.6.066004
Ole Hill, Merve Wollweber, Tobias Biermann, Tammo Ripken, Roland Lachmayer
{"title":"Imperfect refractive index matching in scanning laser optical tomography and a method for digital correction.","authors":"Ole Hill, Merve Wollweber, Tobias Biermann, Tammo Ripken, Roland Lachmayer","doi":"10.1117/1.JBO.29.6.066004","DOIUrl":"10.1117/1.JBO.29.6.066004","url":null,"abstract":"<p><strong>Significance: </strong>Scanning laser optical tomography (SLOT) is a volumetric multi-modal imaging technique that is comparable to optical projection tomography and computer tomography. Image quality is crucially dependent on matching the refractive indexes (RIs) of the sample and surrounding medium, but RI matching often requires some effort and is never perfect.</p><p><strong>Aim: </strong>Reducing the burden of RI matching between the immersion medium and sample in biomedical imaging is a challenging and interesting task. We aim at implementing a post processing strategy for correcting SLOT measurements that have errors caused by RI mismatch.</p><p><strong>Approach: </strong>To better understand the problems with poorly matched Ris, simulated SLOT measurements with imperfect RI matching of the sample and medium are performed and presented here. A method to correct distorted measurements was developed and is presented and evaluated. This method is then applied to a sample containing fluorescent polystyrene beads and a sample made of olydimethylsiloxane with embedded fluorescent nanoparticles.</p><p><strong>Results: </strong>From the simulations, it is evident that measurements with an RI mismatch larger than 0.02 and no correction yield considerably worse results compared to perfectly matched measurements. RI mismatches larger than 0.05 make it almost impossible to resolve finer details and structures. By contrast, the simulations imply that a measurement with an RI mismatch of up to 0.1 can still yield reasonable results if the presented correction method is applied. The experiments validate the simulated results for an RI mismatch of about 0.09.</p><p><strong>Conclusions: </strong>The method significantly improves the SLOT image quality for samples with imperfectly matched Ris. Although the absolutely best imaging quality will be achieved with perfect RI matching, these results pave the way for imaging in SLOT with RI mismatches while maintaining high image quality.</p>","PeriodicalId":15264,"journal":{"name":"Journal of Biomedical Optics","volume":"29 6","pages":"066004"},"PeriodicalIF":3.0,"publicationDate":"2024-06-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11095122/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140944940","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Dual-ratio approach to pulse oximetry and the effect of skin tone. 脉搏氧饱和度的双比例方法和肤色的影响。
IF 3 3区 医学
Journal of Biomedical Optics Pub Date : 2024-06-01 Epub Date: 2024-10-12 DOI: 10.1117/1.JBO.29.S3.S33311
Giles Blaney, Jodee Frias, Fatemeh Tavakoli, Angelo Sassaroli, Sergio Fantini
{"title":"Dual-ratio approach to pulse oximetry and the effect of skin tone.","authors":"Giles Blaney, Jodee Frias, Fatemeh Tavakoli, Angelo Sassaroli, Sergio Fantini","doi":"10.1117/1.JBO.29.S3.S33311","DOIUrl":"10.1117/1.JBO.29.S3.S33311","url":null,"abstract":"<p><strong>Significance: </strong>Pulsatile blood oxygen saturation ( <math> <mrow><msub><mi>SpO</mi> <mn>2</mn></msub> </mrow> </math> ) via pulse oximetry is a valuable clinical metric for assessing oxygen delivery. Individual anatomical features, including skin tone, may affect current optical pulse oximetry methods.</p><p><strong>Aim: </strong>We developed an optical pulse oximetry method based on dual-ratio (DR) measurements to suppress individual anatomical confounds on <math> <mrow><msub><mi>SpO</mi> <mn>2</mn></msub> </mrow> </math> .</p><p><strong>Approach: </strong>We designed a DR-based finger pulse oximeter, hypothesizing that DR would suppress confounds from optical coupling and superficial tissue absorption. This method is tested using Monte Carlo simulations and <i>in vivo</i> experiments.</p><p><strong>Results: </strong>Different melanosome volume fractions in the epidermis, a surrogate for skin tone, cause changes in the recovered <math> <mrow><msub><mi>SpO</mi> <mn>2</mn></msub> </mrow> </math> on the order of 1% in simulation and <i>in vivo</i>. Different heterogeneous pulsatile hemodynamics cause greater changes on the order of 10% in simulations. <math> <mrow><msub><mi>SpO</mi> <mn>2</mn></msub> </mrow> </math> recovered with DR measurements showed less variability than the traditional single-distance (SD) transmission method.</p><p><strong>Conclusions: </strong>For the models and methods considered here, <math> <mrow><msub><mi>SpO</mi> <mn>2</mn></msub> </mrow> </math> measurements are strongly impacted by heterogeneous pulsatile hemodynamics. This variability may be larger than the skin tone bias, which is a known confound in <math> <mrow><msub><mi>SpO</mi> <mn>2</mn></msub> </mrow> </math> measurements. The partial suppression of variability in the <math> <mrow><msub><mi>SpO</mi> <mn>2</mn></msub> </mrow> </math> recovered by DR suggests the promise of DR for pulse oximetry.</p>","PeriodicalId":15264,"journal":{"name":"Journal of Biomedical Optics","volume":"29 Suppl 3","pages":"S33311"},"PeriodicalIF":3.0,"publicationDate":"2024-06-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11470749/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142466412","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Monte Carlo simulation of the effect of melanin concentration on light-tissue interactions for transmittance pulse oximetry measurement. 蒙特卡罗模拟黑色素浓度对透射脉搏血氧仪测量中光-组织相互作用的影响。
IF 3 3区 医学
Journal of Biomedical Optics Pub Date : 2024-06-01 Epub Date: 2024-08-13 DOI: 10.1117/1.JBO.29.S3.S33305
Raghda Al-Halawani, Meha Qassem, Panicos A Kyriacou
{"title":"Monte Carlo simulation of the effect of melanin concentration on light-tissue interactions for transmittance pulse oximetry measurement.","authors":"Raghda Al-Halawani, Meha Qassem, Panicos A Kyriacou","doi":"10.1117/1.JBO.29.S3.S33305","DOIUrl":"10.1117/1.JBO.29.S3.S33305","url":null,"abstract":"<p><strong>Significance: </strong>Questions about the accuracy of pulse oximeters in measuring arterial oxygen saturation ( <math> <mrow><msub><mi>SpO</mi> <mn>2</mn></msub> </mrow> </math> ) in individuals with darker skin pigmentation have resurfaced since the COVID-19 pandemic. This requires investigation to improve patient safety, clinical decision making, and research.</p><p><strong>Aim: </strong>We aim to use computational modeling to identify the potential causes of inaccuracy in <math> <mrow><msub><mi>SpO</mi> <mn>2</mn></msub> </mrow> </math> measurement in individuals with dark skin and suggest practical solutions to minimize bias.</p><p><strong>Approach: </strong>An <i>in silico</i> model of the human finger was developed to explore how changing melanin concentration and arterial oxygen saturation ( <math> <mrow><msub><mi>SaO</mi> <mn>2</mn></msub> </mrow> </math> ) affect pulse oximeter calibration algorithms using the Monte Carlo (MC) technique. The model generates calibration curves for Fitzpatrick skin types I, IV, and VI and an <math> <mrow><msub><mi>SaO</mi> <mn>2</mn></msub> </mrow> </math> range between 70% and 100% in transmittance mode. <math> <mrow><msub><mi>SpO</mi> <mn>2</mn></msub> </mrow> </math> was derived by inputting the computed ratio of ratios for light and dark skin into a widely used calibration algorithm equation to calculate bias ( <math> <mrow> <msub><mrow><mi>SpO</mi></mrow> <mrow><mn>2</mn></mrow> </msub> <mo>-</mo> <msub><mrow><mi>SaO</mi></mrow> <mrow><mn>2</mn></mrow> </msub> </mrow> </math> ). These were validated against an experimental study to suggest the validity of the Monte Carlo model. Further work included applying different multiplication factors to adjust the moderate and dark skin calibration curves relative to light skin.</p><p><strong>Results: </strong>Moderate and dark skin calibration curve equations were different from light skin, suggesting that a single algorithm may not be suitable for all skin types due to the varying behavior of light in different epidermal melanin concentrations, especially at 660 nm. The ratio between the mean bias in White and Black subjects in the cohort study was 6.6 and 5.47 for light and dark skin, respectively, from the Monte Carlo model. A linear multiplication factor of 1.23 and exponential factor of 1.8 were applied to moderate and dark skin calibration curves, resulting in similar alignment.</p><p><strong>Conclusions: </strong>This study underpins the careful re-assessment of pulse oximeter designs to minimize bias in <math> <mrow><msub><mi>SpO</mi> <mn>2</mn></msub> </mrow> </math> measurements across diverse populations.</p>","PeriodicalId":15264,"journal":{"name":"Journal of Biomedical Optics","volume":"29 Suppl 3","pages":"S33305"},"PeriodicalIF":3.0,"publicationDate":"2024-06-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11321364/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141975799","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
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