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25SrRNA Methyltransferase CgBMT5 From Candida glycerinogenes Improves Tolerance and Fermentation Performance of Saccharomyces cerevisiae and Yarrowia lipolytica From Undetoxified Cellulose Hydrolysate 来自甘油腺念珠菌的 25SrRNA 甲基转移酶 CgBMT5 提高了酿酒酵母和脂肪分解酵母对未解毒纤维素水解物的耐受性和发酵性能。
IF 3.2 3区 生物学
Biotechnology Journal Pub Date : 2024-10-09 DOI: 10.1002/biot.202400397
Xinyao Lu, Xiaoqing Hao, Wen Lv, Bin Zhuge, Hong Zong
{"title":"25SrRNA Methyltransferase CgBMT5 From Candida glycerinogenes Improves Tolerance and Fermentation Performance of Saccharomyces cerevisiae and Yarrowia lipolytica From Undetoxified Cellulose Hydrolysate","authors":"Xinyao Lu,&nbsp;Xiaoqing Hao,&nbsp;Wen Lv,&nbsp;Bin Zhuge,&nbsp;Hong Zong","doi":"10.1002/biot.202400397","DOIUrl":"10.1002/biot.202400397","url":null,"abstract":"<div>\u0000 \u0000 <p>The hydrolysis of cellulose generates inhibitors like acetate, suppressing fermentation performance. Here, 25SrRNA methyltransferase CgBMT5 from stress-tolerant yeast <i>Candida glycerinogenes</i> was used as an anti-stress gene element in <i>Saccharomyces cerevisiae</i> and <i>Yarrowia lipolytica</i>. Expression of <i>CgBMT5</i> in <i>S. cerevisiae</i> increased cell tolerance to acetate, high osmolarity, and heat stress and rescued the delay in cell growth under acetate stress. Ethanol productivity was improved from 0.52 g·(L/h) to 0.69 g·(L/h). CgBMT5 improved GFP expression. The transcription factor ARG81 binds to the promoter of <i>CgBMT5</i>. CgBMT5 upregulated <i>HOG1</i>, <i>GPD1</i>, <i>HAA1</i>, and <i>PMA1</i> and reduced ROS level, thereby improving cell resistance to acetate. CgBMT5 also improved resistance of <i>Y. lipolytica</i> Po1g to multiple-stress. The lipid titer was improved by 37% in the typical medium. <i>Y. lipolytica-CgBMT5</i> produced 94 mg/L lipid in the undetoxified cellulose hydrolysate.</p>\u0000 </div>","PeriodicalId":134,"journal":{"name":"Biotechnology Journal","volume":"19 10","pages":""},"PeriodicalIF":3.2,"publicationDate":"2024-10-09","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142386593","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Selecting Endogenous Promoters for Improving Biosynthesis of Squalene in Schizochytrium sp. 选择内源启动子以改善裂殖子藻类角鲨烯的生物合成
IF 3.2 3区 生物学
Biotechnology Journal Pub Date : 2024-10-09 DOI: 10.1002/biot.202400237
Fang-Tong Nong, Zi-Xu Zhang, Lu-Wei Xu, Fei Du, Wang Ma, Guang Yang, Xiao-Man Sun
{"title":"Selecting Endogenous Promoters for Improving Biosynthesis of Squalene in Schizochytrium sp.","authors":"Fang-Tong Nong,&nbsp;Zi-Xu Zhang,&nbsp;Lu-Wei Xu,&nbsp;Fei Du,&nbsp;Wang Ma,&nbsp;Guang Yang,&nbsp;Xiao-Man Sun","doi":"10.1002/biot.202400237","DOIUrl":"10.1002/biot.202400237","url":null,"abstract":"<div>\u0000 \u0000 <p>Squalene (C<sub>30</sub>H<sub>50</sub>) is an acyclic triterpenoid compound renowned for its myriad physiological functions, such as anticancer and antioxidative properties, rendering it invaluable in both the food and pharmaceutical sectors. Due to the natural resource constraints, microbial fermentation has emerged as a prominent trend. <i>Schizochytrium</i> sp., known to harbor the intact mevalonate acid (MVA) pathway, possesses the inherent capability to biosynthesize squalene. However, there is a dearth of reported key genes in both the MVA and the squalene synthesis pathways, along with the associated promoter elements for their modification. This study commenced by cloning and characterizing 13 endogenous promoters derived from transcriptome sequencing data. Subsequently, five promoters exhibiting varying expression intensities were chosen from the aforementioned pool to facilitate the overexpression of the squalene synthase gene squalene synthetase (SQS), pivotal in the MVA pathway. Ultimately, a transformed strain designated as SQS-3626, exhibiting squalene production 2.8 times greater than that of the wild-type strain, was identified. Finally, the optimization of nitrogen source concentrations and trace element contents in the fermentation medium was conducted. Following 120 h of fed-batch fermentation, the accumulated final squalene yield in the transformed strain SQS-3626 reached 2.2 g/L.</p>\u0000 </div>","PeriodicalId":134,"journal":{"name":"Biotechnology Journal","volume":"19 10","pages":""},"PeriodicalIF":3.2,"publicationDate":"2024-10-09","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142386602","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Concentration-Dependent Effects of MXene Nanocomposite-Loaded Carboxymethyl Cellulose on Wound Healing MXene 纳米复合材料负载羧甲基纤维素对伤口愈合的浓度依赖性影响
IF 3.2 3区 生物学
Biotechnology Journal Pub Date : 2024-10-09 DOI: 10.1002/biot.202400448
Salma Nasser, Mohamed Abd Elkodous, Rasha Tawfik, Hossam Tohamy, Mahmoud El-Kammar, Samir Nouh, Hoda Elkhenany
{"title":"Concentration-Dependent Effects of MXene Nanocomposite-Loaded Carboxymethyl Cellulose on Wound Healing","authors":"Salma Nasser,&nbsp;Mohamed Abd Elkodous,&nbsp;Rasha Tawfik,&nbsp;Hossam Tohamy,&nbsp;Mahmoud El-Kammar,&nbsp;Samir Nouh,&nbsp;Hoda Elkhenany","doi":"10.1002/biot.202400448","DOIUrl":"10.1002/biot.202400448","url":null,"abstract":"<div>\u0000 \u0000 <p>Nanoparticles (NPs) have emerged as a promising solution for many biomedical applications. Although not all particles have antimicrobial or regenerative properties, certain NPs show promise in enhancing wound healing by promoting tissue regeneration, reducing inflammation, and preventing infection. Integrating various NPs can further enhance these effects. Herein, the zinc oxide (ZnO)-MXene-Ag nanocomposite was prepared, and the conjugation of its three components was confirmed through scanning electron microscopy (SEM) and energy dispersive X-ray (EDX) mapping analysis. In vitro analysis using the agar well diffusion technique demonstrated that ZnO-MXene-Ag nanocomposite exhibited high antimicrobial efficacy, significantly inhibiting <i>Escherichia coli</i>, <i>Salmonella</i>, and <i>Candida albicans</i>, and showing enhanced potency when combined with tetracycline, resulting in a 2.6-fold increase against <i>Staphylococcus</i> and a 2.4-fold increase against <i>Pseudomonas</i>. The efficacy of nanocomposite-loaded carboxymethyl cellulose (CMC) gel on wound healing was investigated using varying concentrations (0, 1, 5, and 10 mg/mL). Wound healing was monitored over 21 days, with results indicating that wounds treated with 1 mg/mL ZnO-MXene-Ag gel exhibited superior healing compared to the control group (0 mg/mL), with significant improvements noted from Day 3 onward. Conversely, higher concentrations (10 mg/mL) resulted in reduced healing efficiency, particularly notable on Day 15. In conclusion, the ZnO-MXene-Ag nanocomposite-loaded CMC gel is a promising agent for enhanced wound healing and antimicrobial applications. These findings highlight the importance of optimizing NP concentration to maximize therapeutic benefits while minimizing potential cytotoxicity.</p>\u0000 </div>","PeriodicalId":134,"journal":{"name":"Biotechnology Journal","volume":"19 10","pages":""},"PeriodicalIF":3.2,"publicationDate":"2024-10-09","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142386596","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Explainable Machine Learning Models to Predict Gibbs–Donnan Effect During Ultrafiltration and Diafiltration of High-Concentration Monoclonal Antibody Formulations 预测高浓度单克隆抗体制剂超滤和渗滤过程中吉布斯-多南效应的可解释机器学习模型。
IF 3.2 3区 生物学
Biotechnology Journal Pub Date : 2024-10-09 DOI: 10.1002/biot.202400212
Chyi-Shin Chen, Seiryu Ujiie, Reina Tanibata, Takuo Kawase, Shohei Kobayashi
{"title":"Explainable Machine Learning Models to Predict Gibbs–Donnan Effect During Ultrafiltration and Diafiltration of High-Concentration Monoclonal Antibody Formulations","authors":"Chyi-Shin Chen,&nbsp;Seiryu Ujiie,&nbsp;Reina Tanibata,&nbsp;Takuo Kawase,&nbsp;Shohei Kobayashi","doi":"10.1002/biot.202400212","DOIUrl":"10.1002/biot.202400212","url":null,"abstract":"<p>Evaluating the Gibbs–Donnan and volume exclusion effects during protein ultrafiltration and diafiltration (UF/DF) is crucial in biopharmaceutical process development to precisely control the concentration of the drug substance in the final formulation. Understanding the interactions between formulation excipients and proteins under these conditions requires a domain-specific knowledge of molecular-level phenomena. This study developed gradient boosted tree models to predict the Gibbs–Donnan and volume exclusion effects for amino acids and therapeutic monoclonal antibodies using simple molecular descriptors. The models’ predictions were interpreted by information gain and Shapley additive explanation (SHAP) values to understand the modes of action of the antibodies and excipients and to validate the models. The results translated feature effects in machine learning to real-world molecular interactions, which were cross-referenced with existing scientific literature for verification. The models were validated in pilot-scale manufacturing runs of two antibody products requiring high levels of concentration. By only requiring a molecule's biophysicochemical descriptors and process conditions, the proposed models provide an in silico alternative to conventional UF/DF experiments to accelerate process development and boost process understanding of the underlying molecular mechanisms through rational interpretation of the models.</p>","PeriodicalId":134,"journal":{"name":"Biotechnology Journal","volume":"19 10","pages":""},"PeriodicalIF":3.2,"publicationDate":"2024-10-09","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1002/biot.202400212","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142386599","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Genome-Scale Metabolic Modeling of Halomonas elongata 153B Explains Polyhydroxyalkanoate and Ectoine Biosynthesis in Hypersaline Environments Halomonas elongata 153B 的基因组尺度代谢模型解释了低盐环境中多羟基烷酸和外辛的生物合成。
IF 3.2 3区 生物学
Biotechnology Journal Pub Date : 2024-10-09 DOI: 10.1002/biot.202400267
Blaise Manga Enuh, Pınar Aytar Çelik, Claudio Angione
{"title":"Genome-Scale Metabolic Modeling of Halomonas elongata 153B Explains Polyhydroxyalkanoate and Ectoine Biosynthesis in Hypersaline Environments","authors":"Blaise Manga Enuh,&nbsp;Pınar Aytar Çelik,&nbsp;Claudio Angione","doi":"10.1002/biot.202400267","DOIUrl":"10.1002/biot.202400267","url":null,"abstract":"<p><i>Halomonas elongata</i> thrives in hypersaline environments producing polyhydroxyalkanoates (PHAs) and osmoprotectants such as ectoine. Despite its biotechnological importance, several aspects of the dynamics of its metabolism remain elusive. Here, we construct and validate a genome-scale metabolic network model for <i>H. elongata</i> 153B. Then, we investigate the flux distribution dynamics during optimal growth, ectoine, and PHA biosynthesis using statistical methods, and a pipeline based on shadow prices. Lastly, we use optimization algorithms to uncover novel engineering targets to increase PHA production. The resulting model (<i>i</i>EB1239) includes 1534 metabolites, 2314 reactions, and 1239 genes. <i>i</i>EB1239 can reproduce growth on several carbon sources and predict growth on previously unreported ones. It also reproduces biochemical phenotypes related to <i>Oad</i> and <i>Ppc</i> gene functions in ectoine biosynthesis. A flux distribution analysis during optimal ectoine and PHA biosynthesis shows decreased energy production through oxidative phosphorylation. Furthermore, our analysis unveils a diverse spectrum of metabolic alterations that extend beyond mere flux changes to encompass heightened precursor production for ectoine and PHA synthesis. Crucially, these findings capture other metabolic changes linked to adaptation in hypersaline environments. Bottlenecks in the glycolysis and fatty acid metabolism pathways are identified, in addition to <i>PhaC</i>, which has been shown to increase PHA production when overexpressed. Overall, our pipeline demonstrates the potential of genome-scale metabolic models in combination with statistical approaches to obtain insights into the metabolism of <i>H. elongata</i>. Our platform can be exploited for researching environmental adaptation, and for designing and optimizing metabolic engineering strategies for bioproduct synthesis.</p>","PeriodicalId":134,"journal":{"name":"Biotechnology Journal","volume":"19 10","pages":""},"PeriodicalIF":3.2,"publicationDate":"2024-10-09","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1002/biot.202400267","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142386600","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Enhancing the expression of terminal deoxynucleotidyl transferases by N-terminal truncation 通过 N 端截断增强末端脱氧核苷酸转移酶的表达
IF 3.2 3区 生物学
Biotechnology Journal Pub Date : 2024-09-19 DOI: 10.1002/biot.202400226
An-Na Li, Kun Shi, Bu-Bing Zeng, Jian-He Xu, Hui-Lei Yu
{"title":"Enhancing the expression of terminal deoxynucleotidyl transferases by N-terminal truncation","authors":"An-Na Li,&nbsp;Kun Shi,&nbsp;Bu-Bing Zeng,&nbsp;Jian-He Xu,&nbsp;Hui-Lei Yu","doi":"10.1002/biot.202400226","DOIUrl":"10.1002/biot.202400226","url":null,"abstract":"<p>Terminal deoxynucleotidyl transferase (TdT), a unique DNA polymerase that catalyzes the template-free incorporation of nucleotides into single-stranded DNA, has facilitated the development of various oligonucleotide-based tools and methods, especially in the field of template-free enzymatic DNA synthesis. However, expressing vertebrate-derived TdTs in <i>Escherichia coli</i> complicates purification and increases production costs. In this study, N-terminal truncation of TdTs was performed to improve their expression and stability. The results revealed that N-terminal truncation could enhance the expression level of six TdTs. Among the truncated mutants, N-140-<i>Za</i>TdT and N-140-<i>Cp</i>TdT, with 140 amino acids removed, exhibited an increase in protein expression, which was 9.5- and 23-fold higher than their wild-types, respectively. Importantly, the truncation preserves the catalytic function of TdT. Additionally, the <i>T</i><sub>m</sub> values of N-140-<i>Za</i>TdT increased by 4.9°C. The improved expression of the truncated mutants makes them more suitable for reducing production costs and advancing enzyme engineering.</p>","PeriodicalId":134,"journal":{"name":"Biotechnology Journal","volume":"19 9","pages":""},"PeriodicalIF":3.2,"publicationDate":"2024-09-19","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142256061","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
CRISPR/Cas9-based genome engineering in the filamentous fungus Rhizopus oryzae and its application to L-lactic acid production 基于 CRISPR/Cas9 的丝状真菌根瘤菌基因组工程及其在 L-乳酸生产中的应用。
IF 3.2 3区 生物学
Biotechnology Journal Pub Date : 2024-09-19 DOI: 10.1002/biot.202400309
Haodong Zhu, Han Wang, Li Wang, Zhiming Zheng
{"title":"CRISPR/Cas9-based genome engineering in the filamentous fungus Rhizopus oryzae and its application to L-lactic acid production","authors":"Haodong Zhu,&nbsp;Han Wang,&nbsp;Li Wang,&nbsp;Zhiming Zheng","doi":"10.1002/biot.202400309","DOIUrl":"10.1002/biot.202400309","url":null,"abstract":"<p>The filamentous fungus <i>Rhizopus oryzae</i> is one of the main industrial strains for the production of a series of important chemicals such as ethanol, lactic acid, and fumaric acid. However, the lack of efficient gene editing tools suitable for <i>R. oryzae</i> makes it difficult to apply technical methods such as metabolic engineering regulation and synthetic biology modification. A CRISPR-Cas9 system suitable for efficient genome editing in <i>R. oryzae</i> was developed. Firstly, four endogenous U6 promoters of <i>R. oryzae</i> were identified and screened with the highest transcriptional activity for application to sgRNA transcription. It was then determined that the U6 promoter mediated CRISPR/Cas9 system has the ability to efficiently edit the genome of <i>R. oryzae</i> through NHEJ and HDR-mediated events. Furthermore, the newly constructed CRISPR-Cas9 dual sgRNAs system can simultaneously disrupt or insert different fragments of the <i>R. oryzae</i> genome. Finally, this CRISPR-Cas9 system was applied to the genome editing of <i>R. oryzae</i> by knocking out pyruvate carboxylase gene (<i>PYC</i>) and pyruvate decarboxylase gene (<i>pdcA</i>) and knocking in phosphofructokinase (pfkB) from <i>Escherichia coli</i> and L-lactate dehydrogenase (L-LDH) from <i>Heyndrickxia coagulans</i>, which resulted in a substantial increase in L-LA production. In summary, this study showed that the CRISPR/Cas9-based genome editing tool is efficient for manipulating genes in <i>R. oryzae</i>.</p>","PeriodicalId":134,"journal":{"name":"Biotechnology Journal","volume":"19 9","pages":""},"PeriodicalIF":3.2,"publicationDate":"2024-09-19","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142256065","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Development of an automated high-content immunofluorescence assay of pSmads quantification: Proof-of-concept with drugs inhibiting the BMP/TGF-β pathways 开发 pSmads 定量的自动化高含量免疫荧光测定:使用抑制 BMP/TGF-β 通路的药物进行概念验证
IF 3.2 3区 生物学
Biotechnology Journal Pub Date : 2024-09-19 DOI: 10.1002/biot.202400007
Valia Khodr, Laura Clauzier, Paul Machillot, Adrià Sales, Elisa Migliorini, Catherine Picart
{"title":"Development of an automated high-content immunofluorescence assay of pSmads quantification: Proof-of-concept with drugs inhibiting the BMP/TGF-β pathways","authors":"Valia Khodr,&nbsp;Laura Clauzier,&nbsp;Paul Machillot,&nbsp;Adrià Sales,&nbsp;Elisa Migliorini,&nbsp;Catherine Picart","doi":"10.1002/biot.202400007","DOIUrl":"https://doi.org/10.1002/biot.202400007","url":null,"abstract":"<div>\u0000 \u0000 \u0000 <section>\u0000 \u0000 <h3> Introduction</h3>\u0000 \u0000 <p>Bone morphogenetic proteins (BMPs) and transforming growth factors (TGF-β) are members of the TGF-β superfamily, known for their roles in several physiological and pathological processes. These factors are known to bind in vivo to BMP and TGF-β receptors, respectively, which induces the phosphorylation of Smad (pSmad) transcription factors. This pathway is generally studied with Western blot and luciferase bioluminescence assay, which presents some limitations.</p>\u0000 </section>\u0000 \u0000 <section>\u0000 \u0000 <h3> Purpose</h3>\u0000 \u0000 <p>In this work, we developed and optimized a high-throughput assay to study pSmad pathways using immunofluorescence (IF) as an alternative to Western blot. We aimed to overcome the technical challenges usually faced in the classical IF assay in image acquisition, analysis, and quantification.</p>\u0000 </section>\u0000 \u0000 <section>\u0000 \u0000 <h3> Methods</h3>\u0000 \u0000 <p>We used C2C12 cells as a cellular model. The cells were stimulated with BMP-2 and TGF-β1 that were delivered either in solution (soluble) or via a biomaterial presenting the growth factor (GF), that is in a “matrix-bound” manner. Image acquisition parameters, analysis methods, and quantification of pSmads using IF were optimized for cells cultured on two types of supports: on bare glass and on a biomimetic coating made by self-assembly of the biopolymers hyaluronic acid and poly(<span>l</span>-lysine), which was crosslinked and then loaded with the GFs.</p>\u0000 </section>\u0000 \u0000 <section>\u0000 \u0000 <h3> Results</h3>\u0000 \u0000 <p>We performed high-content kinetic studies of pSmad expression for cells cultured in 96-well microplates in response to soluble and matrix-bound BMP-2 and TGF-β1. The detection limit of the IF-based assay was found to be similar to Western blot. Additionally, we provide a proof-of-concept for drug testing using inhibitors of BMP and TGF-β receptors, under conditions where specific signaling pathways are engaged via the ligand/receptor interactions. Altogether, our findings offer perspectives for future mechanistic studies on cell signaling and for studies at the single cell level using imaging methods.</p>\u0000 </section>\u0000 </div>","PeriodicalId":134,"journal":{"name":"Biotechnology Journal","volume":"19 9","pages":""},"PeriodicalIF":3.2,"publicationDate":"2024-09-19","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1002/biot.202400007","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142273021","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
High-efficiency bioconversion of phytosterol to bisnoralcohol by metabolically engineered Mycobacterium neoaurum in a micro-emulsion system 新金牛分枝杆菌在微乳液系统中将植物甾醇高效生物转化为双花醇。
IF 3.2 3区 生物学
Biotechnology Journal Pub Date : 2024-09-19 DOI: 10.1002/biot.202400387
Xinxin Wang, Xia Ke, Hongduo Dong, Zhiqiang Liu, Yuguo Zheng
{"title":"High-efficiency bioconversion of phytosterol to bisnoralcohol by metabolically engineered Mycobacterium neoaurum in a micro-emulsion system","authors":"Xinxin Wang,&nbsp;Xia Ke,&nbsp;Hongduo Dong,&nbsp;Zhiqiang Liu,&nbsp;Yuguo Zheng","doi":"10.1002/biot.202400387","DOIUrl":"10.1002/biot.202400387","url":null,"abstract":"<p>21-Hydroxy-20-methylpregn-4-en-3-one (4-HBC, bisnoralcohol) is a crucial intermediate for the synthesis of steroidal drugs. Significant challenges including by-products formation and poor substrate solubility were still confronted in its main synthetic route by microbial conversion from phytosterol. Construction of a direct bioconversion pathway to 4-HBC and an efficient substrate emulsion system is therefore urgently required. In this study, three novel isoenzymes of 3-ketosteroid-Δ<sup>1</sup>-dehydrogenase (KstD) and 3-ketosteroid 9α-hydroxylase (KsH) in <i>Mycobacterium neoaurum</i> were excavated and identified as KstD4, KstD5, and KsHA3. A strain capable of fully directing the synthesis of 4-HBC was metabolically engineered via serial genetic deletion combined with enhanced expression of cholesterol oxidase (ChOx2) and enoyl-CoA hydratase (EchA19). Moreover, a micro-emulsion system combined with soybean oil and hydroxypropyl-β-cyclodextrin improved substrate solubility and bioavailability. In batch fermentation, molar yield of 96.7% with 39.5 g L<sup>−1</sup> 4-HBC was obtained from 50 g L<sup>−1</sup> phytosterol. Our findings demonstrate the potential for industrial-scale biosynthesis of 4-HBC.</p>","PeriodicalId":134,"journal":{"name":"Biotechnology Journal","volume":"19 9","pages":""},"PeriodicalIF":3.2,"publicationDate":"2024-09-19","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142269141","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Optimizing Conditions of Polyethylene Glycol Precipitation for Exosomes Isolation From MSCs Culture Media for Regenerative Treatment 从间叶干细胞培养基中分离外泌体用于再生治疗的聚乙二醇沉淀条件优化。
IF 3.2 3区 生物学
Biotechnology Journal Pub Date : 2024-09-19 DOI: 10.1002/biot.202400374
Junjun Yu, Daqiang Huang, Hanwen Liu, Haibo Cai
{"title":"Optimizing Conditions of Polyethylene Glycol Precipitation for Exosomes Isolation From MSCs Culture Media for Regenerative Treatment","authors":"Junjun Yu,&nbsp;Daqiang Huang,&nbsp;Hanwen Liu,&nbsp;Haibo Cai","doi":"10.1002/biot.202400374","DOIUrl":"10.1002/biot.202400374","url":null,"abstract":"<div>\u0000 \u0000 <p>Mesenchymal stem cell (MSC)-derived exosomes, as a cell-free alternative to MSCs, offer enhanced safety and significant potential in regenerative medicine. However, isolating these exosomes poses a challenge, complicating their broader application. Commonly used methods like ultracentrifugation (UC) and tangential flow filtration are often impractical due to the requirement for costly instruments and ultrafiltration membranes. Additionally, the high cost of commercial kits limits their use in processing large sample volumes. Polyethylene glycol (PEG) precipitation offers a more convenient and cost-effective alternative, but there is a critical need for optimized and standardized isolation protocols using PEG precipitation across different cell types and fluids to ensure consistent quality and yield. In this work, we optimized the PEG precipitation method for exosomes isolation and compared its effectiveness to two commonly used methods: UC and commercial exosome isolation kits (ExoQuick). The recovery rate of the optimized PEG method (about 61.74%) was comparable to that of the commercial ExoQuick kit (about 62.19%), which was significantly higher than UC (about 45.80%). Exosome cargo analysis validated no significant differences in miRNA and protein profiles associated with the proliferation and migration of exosomes isolated by UC and PEG precipitation, which was confirmed by gap closure and CCK8 assays. These findings suggest that PEG-based exosomes isolation could be a highly efficient and high-quality method and may facilitate the development of exosome-based therapies for regenerative medicine.</p>\u0000 </div>","PeriodicalId":134,"journal":{"name":"Biotechnology Journal","volume":"19 9","pages":""},"PeriodicalIF":3.2,"publicationDate":"2024-09-19","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142256069","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
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