Gut Pathogens最新文献

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Overview of pathogenic Escherichia coli, with a focus on Shiga toxin-producing serotypes, global outbreaks (1982-2024) and food safety criteria. 致病性大肠杆菌概述,重点是产生志贺毒素的血清型、全球疫情(1982-2024 年)和食品安全标准。
IF 4.3 3区 医学
Gut Pathogens Pub Date : 2024-10-07 DOI: 10.1186/s13099-024-00641-9
Meshari Ahmed Alhadlaq, Othman I Aljurayyad, Ayidh Almansour, Saleh I Al-Akeel, Khaloud O Alzahrani, Shahad A Alsalman, Reham Yahya, Rashad R Al-Hindi, Mohammed Ageeli Hakami, Saleh D Alshahrani, Naif A Alhumeed, Abdulaziz M Al Moneea, Mazen S Al-Seghayer, Abdulmohsen L AlHarbi, Fahad M Al-Reshoodi, Suliman Alajel
{"title":"Overview of pathogenic Escherichia coli, with a focus on Shiga toxin-producing serotypes, global outbreaks (1982-2024) and food safety criteria.","authors":"Meshari Ahmed Alhadlaq, Othman I Aljurayyad, Ayidh Almansour, Saleh I Al-Akeel, Khaloud O Alzahrani, Shahad A Alsalman, Reham Yahya, Rashad R Al-Hindi, Mohammed Ageeli Hakami, Saleh D Alshahrani, Naif A Alhumeed, Abdulaziz M Al Moneea, Mazen S Al-Seghayer, Abdulmohsen L AlHarbi, Fahad M Al-Reshoodi, Suliman Alajel","doi":"10.1186/s13099-024-00641-9","DOIUrl":"10.1186/s13099-024-00641-9","url":null,"abstract":"<p><p>Classification of pathogenic E. coli has been focused either in mammalian host or infection site, which offers limited resolution. This review presents a comprehensive framework for classifying all E. coli branches within a single, unifying figure. This approach integrates established methods based on virulence factors, serotypes and clinical syndromes, offering a more nuanced and informative perspective on E. coli pathogenicity. The presence of the LEE island in pathogenic E. coli is a key genetic marker differentiating EHEC from STEC strains. The coexistence of stx and eae genes within the bacterial genome is a primary characteristic used to distinguish STEC from other pathogenic E. coli strains. The presence of the inv plasmid, Afa/Dr adhesins, CFA-CS-LT-ST and EAST1 are key distinguishing features for identifying pathogenic E. coli strains belonging to EIEC, DAEC, ETEC and EAEC pathotypes respectively. Food microbiological criteria differentiate pathogenic E. coli in food matrices. 'Zero-tolerance' applies to most ready-to-eat (RTE) foods due to high illness risk. Non-RTE foods' roles may allow limited E. coli presence, which expose consumers to potential risk; particularly from the concerning Shiga toxin-producing E. coli (STEC) strains, which can lead to life-threatening complications in humans, including haemolytic uremic syndrome (HUS) and even death in susceptible individuals. These findings suggest that decision-makers should consider incorporating the separate detection of STEC serotypes into food microbiological criteria, in addition to existing enumeration methods. Contamination of STEC is mainly linked to food consumption, therefore, outbreaks of E. coli STEC has been reviewed here and showed a link also to water as a potential contamination route. Since their discovery in 1982, over 39,787 STEC cases associated with 1,343 outbreaks have been documented. The majority of these outbreaks occurred in the Americas, followed by Europe, Asia and Africa. The most common serotypes identified among the outbreaks were O157, the 'Big Six' (O26, O45, O103, O111, O121, and O145), and other serotypes such as O55, O80, O101, O104, O116, O165, O174 and O183. This review provides valuable insights into the most prevalent serotypes implicated in STEC outbreaks and identifies gaps in microbiological criteria, particularly for E. coli non-O157 and non-Big Six serotypes.</p>","PeriodicalId":12833,"journal":{"name":"Gut Pathogens","volume":"16 1","pages":"57"},"PeriodicalIF":4.3,"publicationDate":"2024-10-07","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11457481/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142380635","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Identification of age-associated microbial changes via long-read 16S sequencing. 通过长读 16S 测序鉴定与年龄相关的微生物变化。
IF 4.3 3区 医学
Gut Pathogens Pub Date : 2024-10-05 DOI: 10.1186/s13099-024-00650-8
Kai Yee Toh, Tzi Shin Toh, Khi Pin Chua, Priscilla Rajakumar, Jonathan Wei Jie Lee, Chun Wie Chong
{"title":"Identification of age-associated microbial changes via long-read 16S sequencing.","authors":"Kai Yee Toh, Tzi Shin Toh, Khi Pin Chua, Priscilla Rajakumar, Jonathan Wei Jie Lee, Chun Wie Chong","doi":"10.1186/s13099-024-00650-8","DOIUrl":"10.1186/s13099-024-00650-8","url":null,"abstract":"<p><strong>Background: </strong>Age-related gut microbial changes have been widely investigated over the past decade. Most of the previous age-related microbiome studies were conducted on the Western population, and the short-read sequencing (e.g., 16S V4 or V3-V4 region) was the most common microbiota profiling method. We evaluated the gut compositional differences using the long-read sequencing approach (i.e., PacBio sequencing targeting the full-length V1-V9 regions) to enable a deeper taxonomic resolution and better characterize the gut microbiome of Singaporeans from different age groups.</p><p><strong>Results: </strong>A total of 83 research participants were included in this study. Although no significant differences were detected in alpha and beta diversity, our study demonstrated several bacterial taxa with abundances that were significantly different across age groups. With young individuals as the reference group, Eggerthella lenta and Bacteroides uniformis were found to be significantly altered in the middle-aged group, while Catenibacterium mitsuokai and Bacteroides plebeius were significantly altered in the elderly group. These age-related differences in the gut microbiome were associated with aberrations in several predicted functional pathways, including dysregulations of pathways related to lipopolysaccharide and tricarboxylic acid cycle in older adults.</p><p><strong>Conclusions: </strong>The utilization of long-read sequencing facilitated the identification of species- and strain-level differences across age groups, which was challenging with the partial 16S rRNA sequencing approach. Nevertheless, replication studies are warranted to confirm our findings, and if confirmed, further in vitro and in vivo studies are crucial to better understand the impact of the altered levels of age-related bacterial taxa. Additionally, the modest performance of strain-level taxonomic classification using 16S-ITS-23S gene sequences, likely due to the limited depth of currently available alignment databases, highlights the need for optimization and refinement in curating these databases for the long-read sequencing approach.</p>","PeriodicalId":12833,"journal":{"name":"Gut Pathogens","volume":"16 1","pages":"56"},"PeriodicalIF":4.3,"publicationDate":"2024-10-05","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11456230/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142377781","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Exploring the impact of digestive physicochemical parameters of adults and infants on the pathophysiology of Cryptosporidium parvum using the dynamic TIM-1 gastrointestinal model. 利用动态 TIM-1 胃肠道模型探讨成人和婴儿消化道理化参数对副隐孢子虫病理生理学的影响。
IF 4.3 3区 医学
Gut Pathogens Pub Date : 2024-10-01 DOI: 10.1186/s13099-024-00648-2
Julie Tottey, Lucie Etienne-Mesmin, Sandrine Chalançon, Alix Sausset, Sylvain Denis, Carine Mazal, Christelle Blavignac, Guillaume Sallé, Fabrice Laurent, Stéphanie Blanquet-Diot, Sonia Lacroix-Lamandé
{"title":"Exploring the impact of digestive physicochemical parameters of adults and infants on the pathophysiology of Cryptosporidium parvum using the dynamic TIM-1 gastrointestinal model.","authors":"Julie Tottey, Lucie Etienne-Mesmin, Sandrine Chalançon, Alix Sausset, Sylvain Denis, Carine Mazal, Christelle Blavignac, Guillaume Sallé, Fabrice Laurent, Stéphanie Blanquet-Diot, Sonia Lacroix-Lamandé","doi":"10.1186/s13099-024-00648-2","DOIUrl":"10.1186/s13099-024-00648-2","url":null,"abstract":"<p><strong>Background: </strong>Human cryptosporidiosis is distributed worldwide, and it is recognised as a leading cause of acute diarrhoea and death in infants in low- and middle-income countries. Besides immune status, the higher incidence and severity of this gastrointestinal disease in young children could also be attributed to the digestive environment. For instance, human gastrointestinal physiology undergoes significant changes with age, however the role this variability plays in Cryptosporidium parvum pathogenesis is not known. In this study, we analysed for the first time the impact of digestive physicochemical parameters on C. parvum infection in a human and age-dependent context using a dynamic in vitro gastrointestinal model.</p><p><strong>Results: </strong>Our results showed that the parasite excystation, releasing sporozoites from oocysts, occurs in the duodenum compartment after one hour of digestion in both child (from 6 months to 2 years) and adult experimental conditions. In the child small intestine, slightly less sporozoites were released from excystation compared to adult, however they exhibited a higher luciferase activity, suggesting a better physiological state. Sporozoites collected from the child jejunum compartment also showed a higher ability to invade human intestinal epithelial cells compared to the adult condition. Global analysis of the parasite transcriptome through RNA-sequencing demonstrated a more pronounced modulation in ileal effluents compared to gastric ones, albeit showing less susceptibility to age-related digestive condition. Further analysis of gene expression and enriched pathways showed that oocysts are highly active in protein synthesis in the stomach compartment, whereas sporozoites released in the ileum showed downregulation of glycolysis as well as strong modulation of genes potentially related to gliding motility and secreted effectors.</p><p><strong>Conclusions: </strong>Digestion in a sophisticated in vitro gastrointestinal model revealed that invasive sporozoite stages are released in the small intestine, and are highly abundant and active in the ileum compartment, supporting reported C. parvum tissue tropism. Our comparative analysis suggests that physicochemical parameters encountered in the child digestive environment can influence the amount, physiological state and possibly invasiveness of sporozoites released in the small intestine, thus potentially contributing to the higher susceptibility of young individuals to cryptosporidiosis.</p>","PeriodicalId":12833,"journal":{"name":"Gut Pathogens","volume":"16 1","pages":"55"},"PeriodicalIF":4.3,"publicationDate":"2024-10-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11443851/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142361446","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Toxoplasma Gondii in humans, animals and in the environment in Morocco: a literature review. 摩洛哥人、动物和环境中的弓形虫:文献综述。
IF 4.3 3区 医学
Gut Pathogens Pub Date : 2024-09-29 DOI: 10.1186/s13099-024-00645-5
Ilham Atif, Oulaid Touloun, Samia Boussaa
{"title":"Toxoplasma Gondii in humans, animals and in the environment in Morocco: a literature review.","authors":"Ilham Atif, Oulaid Touloun, Samia Boussaa","doi":"10.1186/s13099-024-00645-5","DOIUrl":"10.1186/s13099-024-00645-5","url":null,"abstract":"<p><p>Toxoplasmosis, caused by Toxoplasma gondii, has the unsettling ability to infect nearly every warm-blooded vertebrate. When transmitted from mother to fetus during pregnancy, it can lead to congenital toxoplasmosis in newborns, which may have severe and even fatal outcomes. Moreover, this parasite is a significant cause of reproductive issues in cattle. The aim of this literature review was to compile and synthesize information on the epidemiology and clinical features of naturally occurring Toxoplasma gondii infections in both humans and animals, as well as to assess the occurrence of oocysts in the environmental matrices in Morocco. To achieve these objectives, data were sourced from four electronic databases: PubMed, Web of Science, Scopus, and Google Scholar. A total of 32 articles published between January 1, 2000, and January 31, 2024, met the inclusion criteria. The findings indicated that the seroprevalence of T. gondii among pregnant women varied by city and appeared to be lower in drier climates. The study identified several risk factors associated with T. gondii infection among women in Morocco, including direct contact with soil, failure to wash fruits and vegetables before eating, limited education, and reliance on well water for drinking. Moreover, there is a limited amount of serological data on T. gondii in animals. In Morocco, the prevalence of this parasite can reach up to 30% in sheep, while it stands at 8.5% in cattle and goats. Leafy greens are particularly prone to hosting pathogens and are associated with foodborne outbreaks. In Morocco, the prevalence of T. gondii in leafy vegetables is around 16%, although soil analyses have not found any oocysts. This review offers a thorough epidemiological overview of T. gondii infections in Morocco, serving as a valuable resource for researchers and aiding in the development of control and prevention programs.</p>","PeriodicalId":12833,"journal":{"name":"Gut Pathogens","volume":"16 1","pages":"53"},"PeriodicalIF":4.3,"publicationDate":"2024-09-29","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11440760/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142345121","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Quorum regulated latent environmental cells of toxigenic Vibrio cholerae and their role in cholera outbreaks. 致毒霍乱弧菌的定量调节潜伏环境细胞及其在霍乱爆发中的作用。
IF 4.3 3区 医学
Gut Pathogens Pub Date : 2024-09-29 DOI: 10.1186/s13099-024-00647-3
Shah Nayeem Faruque, Shinji Yamasaki, Shah M Faruque
{"title":"Quorum regulated latent environmental cells of toxigenic Vibrio cholerae and their role in cholera outbreaks.","authors":"Shah Nayeem Faruque, Shinji Yamasaki, Shah M Faruque","doi":"10.1186/s13099-024-00647-3","DOIUrl":"10.1186/s13099-024-00647-3","url":null,"abstract":"<p><strong>Background: </strong>Diverse bacterial group behaviors are controlled by quorum sensing, a regulatory network of bacterial gene expression based on cell density, and involving communication through chemical signal molecules called autoinducers. Multidisciplinary research in toxigenic Vibrio cholerae the etiologic agent of cholera, appear to suggest group behavior in the ecology, epidemiology, pathogenesis and transmission of the pathogen. This review summarizes latest advances and known aspects of quorum regulated environmental survival form of V. cholerae, and their role in cholera outbreaks, as well as the significance of this knowledge in tracking the pathogen for prevention of cholera.</p><p><strong>Main body: </strong>Pathogenic V. cholerae naturally exists in aquatic reservoirs, and infects humans, often leading to epidemic outbreaks of cholera. Effective detection and monitoring of the pathogen in surface waters have been a research focus in preventing cholera outbreaks. However, in the aquatic reservoirs, V. cholerae persists mostly in a quiescent state referred to as viable but non-culturable (VBNC), or conditionally viable environmental cells (CVEC), which fail to grow in routine bacteriological culture. The presence of CVEC can, however, be observed by fluorescent antibody based microscopy, and they appear as clumps of cells embedded in an exopolysaccharide matrix. Current studies suggest that CVEC found in water are derived from in-vivo formed biofilms excreted by cholera patients. The transition to CVEC occurs when dilution of autoinducers in water blocks quorum-mediated regulatory responses that would normally disperse the cellular aggregates. Consequently, CVEC are resuscitated to actively growing cells if autoinducers are replenished, either in the laboratory, or naturally by other environmental bacteria or the intestinal microbiota when CVEC are ingested by humans or aquatic animals.</p><p><strong>Conclusion: </strong>Quorum sensing plays a crucial role in the environmental persistence of toxigenic V. cholerae in a latent state, and their periodic emergence to cause cholera outbreaks. Furthermore, the autoinducer driven resuscitation of these cells may be a basis for improving the detection of V. cholerae in water samples, and monitoring V. cholerae in their aquatic reservoirs in cholera endemic areas.</p>","PeriodicalId":12833,"journal":{"name":"Gut Pathogens","volume":"16 1","pages":"52"},"PeriodicalIF":4.3,"publicationDate":"2024-09-29","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11441007/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142345120","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Correction: Establishment of persistent enteric mycobacterial infection following streptomycin pre-treatment. 更正:链霉素预处理后肠道霉菌感染持续存在。
IF 4.3 3区 医学
Gut Pathogens Pub Date : 2024-09-29 DOI: 10.1186/s13099-024-00649-1
Shannon C Duffy, Andréanne Lupien, Youssef Elhaji, Mina Farag, Victoria Marcus, Marcel A Behr
{"title":"Correction: Establishment of persistent enteric mycobacterial infection following streptomycin pre-treatment.","authors":"Shannon C Duffy, Andréanne Lupien, Youssef Elhaji, Mina Farag, Victoria Marcus, Marcel A Behr","doi":"10.1186/s13099-024-00649-1","DOIUrl":"10.1186/s13099-024-00649-1","url":null,"abstract":"","PeriodicalId":12833,"journal":{"name":"Gut Pathogens","volume":"16 1","pages":"54"},"PeriodicalIF":4.3,"publicationDate":"2024-09-29","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11441166/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142345117","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Elucidating antibiofilm as well as photocatalytic disinfection potential of green synthesized nanosilver against multi-drug-resistant bacteria and its photodegradation ability of cationic dyes. 阐明绿色合成纳米银对多重耐药菌的抗生物膜和光催化消毒潜力及其对阳离子染料的光降解能力。
IF 4.3 3区 医学
Gut Pathogens Pub Date : 2024-09-27 DOI: 10.1186/s13099-024-00639-3
Bibin Mohan, Padikkamannil Abishad, Pokkittath Radhakrishnan Arya, Marita Dias, Valil Kunjukunju Vinod, Asha Karthikeyan, Sanis Juliet, Nitin Vasantrao Kurkure, Sukhadeo Baliram Barbuddhe, Deepak Bhiwa Rawool, Jess Vergis
{"title":"Elucidating antibiofilm as well as photocatalytic disinfection potential of green synthesized nanosilver against multi-drug-resistant bacteria and its photodegradation ability of cationic dyes.","authors":"Bibin Mohan, Padikkamannil Abishad, Pokkittath Radhakrishnan Arya, Marita Dias, Valil Kunjukunju Vinod, Asha Karthikeyan, Sanis Juliet, Nitin Vasantrao Kurkure, Sukhadeo Baliram Barbuddhe, Deepak Bhiwa Rawool, Jess Vergis","doi":"10.1186/s13099-024-00639-3","DOIUrl":"https://doi.org/10.1186/s13099-024-00639-3","url":null,"abstract":"<p><strong>Background: </strong>Bioinspired nanomaterials have widely been employed as suitable alternatives for controlling biofilm and pathogens due to their distinctive physico-chemical properties.</p><p><strong>Methodology: </strong>This study explored the antibiofilm as well as photocatalytic potential of silver (Ag) nanoparticles (NPs) synthesized using the cell-free supernatant of Lactobacillus acidophilus for the disinfection of multi-drug-resistant (MDR) strains of enteroaggregative E. coli (EAEC), Salmonella Typhimurium, S. Enteritidis and methicillin-resistant Staphylococcus aureus (MRSA) on exposure to LED light. In addition, the removal of toxic cationic dyes i.e., methylene blue (MB), rhodamine B (RhB) and crystal violet (CV) was explored on exposure to sunlight, LED and UV lights.</p><p><strong>Results: </strong>Initially, the synthesis of AgNPs was verified using UV- Vis spectroscopy, X-ray diffraction and transmission electron microscopy. The synthesized AgNPs exhibited MIC and MBC values of 7.80 and 15.625 µg/mL, respectively. The AgNPs exhibited significant inhibition (P < 0.001) in the biofilm-forming ability of all the tested MDR isolates. On exposure to LED light, the AgNPs could effectively eliminate all the tested MDR isolates in a dose-dependent manner. While performing photocatalytic assays, the degradation of RhB was observed to be quite slower than MB and CV irrespective of the tested light sources. Moreover, the sunlight as well as UV light exhibited better photodegradation capacity than LED light. Notwithstanding the light sources, RhB followed zero-order kinetics; however, MB and CV followed primarily second-order kinetics.</p><p><strong>Conclusion: </strong>The green synthesized AgNPs were found to be an effective photocatalytic as well as antifouling candidate that could be applied in therapeutics and wastewater treatment.</p>","PeriodicalId":12833,"journal":{"name":"Gut Pathogens","volume":"16 1","pages":"51"},"PeriodicalIF":4.3,"publicationDate":"2024-09-27","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11438043/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142345118","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Elucidating the genotoxicity of Fusobacterium nucleatum-secreted mutagens in colorectal cancer carcinogenesis. 阐明核酸镰刀菌分泌的诱变剂在大肠癌致癌过程中的基因毒性
IF 4.3 3区 医学
Gut Pathogens Pub Date : 2024-09-27 DOI: 10.1186/s13099-024-00640-w
Wenye Xu, Yuchen Zhang, Dongjiao Chen, Dan Huang, Yang Zhao, Wei Hu, Ling Lin, Yingzhi Liu, Shilan Wang, Judeng Zeng, Chuan Xie, Hung Chan, Qing Li, Huarong Chen, Xiaodong Liu, Sunny H Wong, Jun Yu, Francis K L Chan, Matthew T V Chan, Siew C Ng, William K K Wu, Lin Zhang
{"title":"Elucidating the genotoxicity of Fusobacterium nucleatum-secreted mutagens in colorectal cancer carcinogenesis.","authors":"Wenye Xu, Yuchen Zhang, Dongjiao Chen, Dan Huang, Yang Zhao, Wei Hu, Ling Lin, Yingzhi Liu, Shilan Wang, Judeng Zeng, Chuan Xie, Hung Chan, Qing Li, Huarong Chen, Xiaodong Liu, Sunny H Wong, Jun Yu, Francis K L Chan, Matthew T V Chan, Siew C Ng, William K K Wu, Lin Zhang","doi":"10.1186/s13099-024-00640-w","DOIUrl":"https://doi.org/10.1186/s13099-024-00640-w","url":null,"abstract":"<p><strong>Background: </strong>Fusobacterium nucleatum (F. nucleatum) is one of the key tumorigenic bacteria in colorectal cancer (CRC), yet how F. nucleatum is involved in colorectal cancer carcinogenesis remains unknown.</p><p><strong>Results: </strong>In the present study, we carried out PathSeq analysis on RNA sequencing data from the 430 primary colon adenocarcinomas in TCGA database to assess the relationship between patients' survival and F. nucleatum abundance. Among patients with cecum and ascending colon tumors, we found that F. nucleatum transcriptome abundance is positively correlated with mutation load. We further demonstrated that patients with both high tumoral abundance of F. nucleatum and high mutation load exhibited poorer survival and DNA damage. We furthermore determined that F. nucleatum-conditioned medium (Fn. CM) induces DNA damage in both in vitro and in vivo studies. In addition, two F. nucleatum-secreted mutagens, namely DL-homocystine and allantoic acid, were identified to lead to DNA damage.</p><p><strong>Conclusions: </strong>Our finding delineates the genotoxicity of F.nucleatum-secreted mutagens, which provides a basis for further work to investigate the role of F. nucleatum in the pathogenicity of CRC.</p>","PeriodicalId":12833,"journal":{"name":"Gut Pathogens","volume":"16 1","pages":"50"},"PeriodicalIF":4.3,"publicationDate":"2024-09-27","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11438217/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142345119","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Editorial Expression of Concern: Emerging role of bacterial outer membrane vesicle in gastrointestinal tract. 社论表达关切:细菌外膜囊泡在胃肠道中的新作用。
IF 4.3 3区 医学
Gut Pathogens Pub Date : 2024-09-23 DOI: 10.1186/s13099-024-00646-4
Cheng-Mei Tian, Mei-Feng Yang, Hao-Ming Xu, Min-Zheng Zhu, Yuan Zhang, Jun Yao, Li-Sheng Wang, Yu-Jie Liang, De-Feng Li
{"title":"Editorial Expression of Concern: Emerging role of bacterial outer membrane vesicle in gastrointestinal tract.","authors":"Cheng-Mei Tian, Mei-Feng Yang, Hao-Ming Xu, Min-Zheng Zhu, Yuan Zhang, Jun Yao, Li-Sheng Wang, Yu-Jie Liang, De-Feng Li","doi":"10.1186/s13099-024-00646-4","DOIUrl":"10.1186/s13099-024-00646-4","url":null,"abstract":"","PeriodicalId":12833,"journal":{"name":"Gut Pathogens","volume":"16 1","pages":"49"},"PeriodicalIF":4.3,"publicationDate":"2024-09-23","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11421101/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142307539","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Prevalence of intestinal parasites and Helicobacter pylori coinfection, and contributing factors among patients with gastrointestinal manifestations at Addis Zemen primary hospital, Northwest Ethiopia 埃塞俄比亚西北部亚的斯亚贝巴泽门初级医院胃肠道症状患者肠道寄生虫和幽门螺旋杆菌合并感染的流行率及诱因
IF 4.2 3区 医学
Gut Pathogens Pub Date : 2024-09-19 DOI: 10.1186/s13099-024-00642-8
Andargachew Almaw, Ayenew Berhan, Addisu Ayele, Alemie Fentie, Aynework Abebaw, Birhanemaskal Malkamu, Birhanu Getie, Mulat Erkihun, Yenealem Solomon, Tahir Eyayu, Teklehaimanot Kiros
{"title":"Prevalence of intestinal parasites and Helicobacter pylori coinfection, and contributing factors among patients with gastrointestinal manifestations at Addis Zemen primary hospital, Northwest Ethiopia","authors":"Andargachew Almaw, Ayenew Berhan, Addisu Ayele, Alemie Fentie, Aynework Abebaw, Birhanemaskal Malkamu, Birhanu Getie, Mulat Erkihun, Yenealem Solomon, Tahir Eyayu, Teklehaimanot Kiros","doi":"10.1186/s13099-024-00642-8","DOIUrl":"https://doi.org/10.1186/s13099-024-00642-8","url":null,"abstract":"The urease-producing Helicobacter pylori increase the likelihood that pathogenic intestinal protozoa will use the stomach’s increased hydrogen potential to propagate the disease. Coinfections exacerbate the onset and severity of gastrointestinal symptoms. This study aimed to assess the prevalence of intestinal parasites/Helicobacter pylori coinfection and contributing factors in patients with gastrointestinal symptoms at Addis Zemen Primary Hospital, Northwest Ethiopia. From April to July 2023, patients with gastrointestinal problems participated in a cross-sectional study carried out in a hospital. To collect the clinical and sociodemographic data, a questionnaire was employed. Intestinal parasites and Helicobacter pylori were detected using the saline stool wet mount and Helicobacter pylori stool antigen tests, respectively. SPSS version 20 was used to analyze the data and variables with p-values < 0.05 were considered statistically significant. The study included 384 participants in total, of which 47.3% (182/384) were farmers and 50.3% (193/384) were women. Of the study subjects, 69/384 or approximately 18%, had intestinal parasitic infections. In 12% of cases (46/384), Helicobacter pylori were detected. A coinfection of Helicobacter pylori and intestinal parasites was found in 5.5% (21/384) of the subjects. Multiple logistic regression revealed increased risk of coinfection of Helicobacter pylori and intestinal parasites in patients who drink surface water (AOR: 10.7, p = 0.03) family history of Helicobacter pylori (AOR: 3.3, p = 0.024) and those with untrimmed fingers (AOR: 4.9, p = 0.031). Giardia lamblia and Entamoeba histolytica/dispar/ moshkovskii/ bangladeshi complex are the most common protozoans that cause coinfection with Helicobacter pylori. Drinking surface water, family history of Helicobacter pylori and untrimmed fingers are the contributing factors to intestinal parasites/Helicobacter pylori coinfection.","PeriodicalId":12833,"journal":{"name":"Gut Pathogens","volume":"19 1","pages":""},"PeriodicalIF":4.2,"publicationDate":"2024-09-19","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142247626","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
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