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The Application of scRNA-Seq in Heart Development and Regeneration scRNA-Seq在心脏发育和再生中的应用
IF 2.4 4区 生物学
genesis Pub Date : 2025-04-29 DOI: 10.1002/dvg.70013
Junying Gao, Lindong Yu, Haoran Qi, Jun Qi, Zhaodi Zheng
{"title":"The Application of scRNA-Seq in Heart Development and Regeneration","authors":"Junying Gao,&nbsp;Lindong Yu,&nbsp;Haoran Qi,&nbsp;Jun Qi,&nbsp;Zhaodi Zheng","doi":"10.1002/dvg.70013","DOIUrl":"https://doi.org/10.1002/dvg.70013","url":null,"abstract":"<div>\u0000 \u0000 <p>Single-cell RNA sequencing (scRNA-seq) is a rapidly developing and useful technique for elucidating biological mechanisms and characterizing individual cells. Tens of millions of patients worldwide suffer from heart injuries and other types of heart disease. Neonatal mammalian hearts and certain adult vertebrate species, such as zebrafish, can fully regenerate after myocardial injury. However, the adult mammalian heart is unable to regenerate the damaged myocardium. scRNA-seq provides many new insights into pathological and normal hearts and facilitates our understanding of cellular responses to cardiac injury and repair at different stages, which may provide critical clues for effective therapies for adult heart regeneration. In this review, we summarize the application of scRNA-seq in heart development and regeneration and describe how important molecular mechanisms can be harnessed to promote heart regeneration.</p>\u0000 </div>","PeriodicalId":12718,"journal":{"name":"genesis","volume":"63 2","pages":""},"PeriodicalIF":2.4,"publicationDate":"2025-04-29","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143888913","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Excluding the Genomic Location of Pax2 Regulatory Elements for the Developing Mouse Eye 排除发育中的小鼠眼睛Pax2调控元件的基因组位置
IF 2.4 4区 生物学
genesis Pub Date : 2025-04-29 DOI: 10.1002/dvg.70016
Tzu-Hua Ho, Daniela Santamaria-Munoz, Hollin Hamelynck, Anna La Torre, Tom Glaser, Nadean L. Brown
{"title":"Excluding the Genomic Location of Pax2 Regulatory Elements for the Developing Mouse Eye","authors":"Tzu-Hua Ho,&nbsp;Daniela Santamaria-Munoz,&nbsp;Hollin Hamelynck,&nbsp;Anna La Torre,&nbsp;Tom Glaser,&nbsp;Nadean L. Brown","doi":"10.1002/dvg.70016","DOIUrl":"https://doi.org/10.1002/dvg.70016","url":null,"abstract":"<p>The <i>Pax2</i> transcription factor is activated uniformly in the optic vesicle/cup, but becomes progressively restricted to the forming optic disc and stalk. In the eye, it is not known how <i>Pax2</i> expression is regulated and progressively restricted, in part because no <i>Pax2</i> regulatory elements have been identified for this organ. Multiple Pax2-Cre mouse transgenic lines have been produced, but essentially none of these Cre recombinase drivers are active in the visual system. Only Tg(BAC-Pax2-cre)<sup>Akg</sup> mice have been reported to express Cre in a subset of postnatal retinal astrocytes. We confirm this observation and demonstrate ectopic expression in branchial arches, extraocular muscles, and a subset of GABAergic amacrine cells. Our findings suggest that major eye enhancer(s) for mouse <i>Pax2</i> reside outside the &gt; 180 kb genomic segment delimited by <i>Pax2</i> BAC transgenes.</p>","PeriodicalId":12718,"journal":{"name":"genesis","volume":"63 2","pages":""},"PeriodicalIF":2.4,"publicationDate":"2025-04-29","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1002/dvg.70016","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143888912","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Generation of Myeloid-Specific Bmal1 Knockout Mice and Identification of Bmal1-Regulated Ferroptosis in Macrophages 骨髓特异性Bmal1敲除小鼠的产生和巨噬细胞中Bmal1调控的铁凋亡的鉴定
IF 2.4 4区 生物学
genesis Pub Date : 2025-04-08 DOI: 10.1002/dvg.70014
Qing Chen, Wenyi Wang, Weijun Fang, Lianhua Qin, Jie Wang, Xiaochen Huang, Sha Pan, Ruijuan Zheng
{"title":"Generation of Myeloid-Specific Bmal1 Knockout Mice and Identification of Bmal1-Regulated Ferroptosis in Macrophages","authors":"Qing Chen,&nbsp;Wenyi Wang,&nbsp;Weijun Fang,&nbsp;Lianhua Qin,&nbsp;Jie Wang,&nbsp;Xiaochen Huang,&nbsp;Sha Pan,&nbsp;Ruijuan Zheng","doi":"10.1002/dvg.70014","DOIUrl":"https://doi.org/10.1002/dvg.70014","url":null,"abstract":"<div>\u0000 \u0000 <p>Circadian clocks have a fundamental role in many physiological processes. Bmal1 (basic helix–loop–helix ARNT like 1) is a central master circadian clock gene. The global <i>Bmal1</i> knockout mice were shown to have a loss of circadian rhythms, acceleration of aging, and shortened life span. However, global <i>Bmal1</i> knockout mice did not exactly reflect the Bmal1 function in specific cell or tissue types. To address the importance of circadian rhythms in macrophages, we generated myeloid-specific <i>Bmal1</i> knockout mice. The efficacy of <i>Bmal1</i> gene deletion in macrophages was identified at DNA, transcription, protein levels, and function. In contrast to global <i>Bmal1</i> knockout mice, <i>Bmal1</i><sup><i>flox/flox</i></sup> and <i>Bmal1</i><sup><i>mye−/−</i></sup> mice did not exhibit aging phenotypes. However, the deletion of <i>Bmal1</i> resulted in a loss of rhythmic expression of the circadian genes in macrophages. RNA-Seq revealed that Bmal1 regulated the expression of cell death-related genes in macrophages. Furthermore, these genes have been identified as clock-controlled genes in rhythmic cell models, and Bmal1 controlled the rhythmic expression of these genes in macrophages. Finally, Bmal1 inhibited RSL3-induced ferroptosis in macrophages through Phgdh. In summary, the model of myeloid-specific <i>Bmal1</i> knockout mice was successfully constructed, providing a tool for the study of the roles of Bmal1 in macrophages and the peripheral circadian clock. Meanwhile, Bmal1 regulates ferroptosis in macrophages.</p>\u0000 </div>","PeriodicalId":12718,"journal":{"name":"genesis","volume":"63 2","pages":""},"PeriodicalIF":2.4,"publicationDate":"2025-04-08","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143793741","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
CACNA1G, A Heterotaxy Candidate Gene, Plays a Role in Ciliogenesis and Left-Right Patterning in Xenopus tropicalis CACNA1G基因在热带爪蟾纤毛发生和左右模式中的作用
IF 2.4 4区 生物学
genesis Pub Date : 2025-02-26 DOI: 10.1002/dvg.70009
Valentyna Kostiuk, Rakib Kabir, Rashid Akbari, Amy Rushing, Delfina P. González, Angelina Kim, Ashley Kim, David Zenisek, Mustafa K. Khokha
{"title":"CACNA1G, A Heterotaxy Candidate Gene, Plays a Role in Ciliogenesis and Left-Right Patterning in Xenopus tropicalis","authors":"Valentyna Kostiuk,&nbsp;Rakib Kabir,&nbsp;Rashid Akbari,&nbsp;Amy Rushing,&nbsp;Delfina P. González,&nbsp;Angelina Kim,&nbsp;Ashley Kim,&nbsp;David Zenisek,&nbsp;Mustafa K. Khokha","doi":"10.1002/dvg.70009","DOIUrl":"https://doi.org/10.1002/dvg.70009","url":null,"abstract":"<div>\u0000 \u0000 <p>Heterotaxy (HTX) is characterized by an abnormality in the organ arrangement along the Left-Right (LR) axis and is caused by the disruption of LR patterning in early development. LR asymmetry is critical for multiple organs. Specifically, proper LR patterning is crucial for cardiac function and is a cause of congenital heart disease (CHD). <i>CACNA1G</i> is a candidate gene identified in patients with CHD and HTX. This gene encodes a T-type, low-voltage-activated calcium channel and is a member of the Cav3.1 channel family. However, its function in cardiac or embryonic development remains unknown. Here, we show that abnormal <i>cacna1g</i> expression in <i>Xenopus tropicalis</i> recapitulates the HTX phenotype found in the patient cohort. By examining early LR patterning markers, including <i>pitx2c</i> and <i>dand5</i>, we discovered that both markers are expressed abnormally, suggesting that LR patterning is disrupted at the earliest stages of the LR signaling cascade. Since cilia have been described as key regulators of LR asymmetry, we checked the process of cilia formation in <i>cacna1g</i> crispants. The LR Organizer (LRO) contained reduced cilia quantity in the <i>cacna1g</i> crispants, which may explain the LR defects. In conclusion, the abnormal expression of <i>cacna1g</i> affects cilia in the LRO, leading to abnormal LR patterning and cardiac looping.</p>\u0000 </div>","PeriodicalId":12718,"journal":{"name":"genesis","volume":"63 1","pages":""},"PeriodicalIF":2.4,"publicationDate":"2025-02-26","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143489953","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Meet Our Editorial Board—Genesis. An Interview With Jun (Kelly) Liu, Cornell University, New York, USA 认识我们的编辑委员会--创世纪。美国纽约康奈尔大学刘俊(Kelly)访谈录
IF 2.4 4区 生物学
genesis Pub Date : 2025-02-26 DOI: 10.1002/dvg.70006
Jun (Kelly) Liu, Paul Trevorrow
{"title":"Meet Our Editorial Board—Genesis. An Interview With Jun (Kelly) Liu, Cornell University, New York, USA","authors":"Jun (Kelly) Liu,&nbsp;Paul Trevorrow","doi":"10.1002/dvg.70006","DOIUrl":"https://doi.org/10.1002/dvg.70006","url":null,"abstract":"","PeriodicalId":12718,"journal":{"name":"genesis","volume":"63 1","pages":""},"PeriodicalIF":2.4,"publicationDate":"2025-02-26","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143489968","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Meet Our Editorial Board—Genesis: An Interview With Eric Bellefroid, University Libre de Bruxelles, Bruxelles, Belgium 见见我们的编辑委员会——《创世纪》:采访比利时布鲁塞尔自由大学的埃里克·贝勒弗罗伊德
IF 2.4 4区 生物学
genesis Pub Date : 2025-02-26 DOI: 10.1002/dvg.70003
Paul Trevorrow, Eric Bellefroid
{"title":"Meet Our Editorial Board—Genesis: An Interview With Eric Bellefroid, University Libre de Bruxelles, Bruxelles, Belgium","authors":"Paul Trevorrow,&nbsp;Eric Bellefroid","doi":"10.1002/dvg.70003","DOIUrl":"https://doi.org/10.1002/dvg.70003","url":null,"abstract":"","PeriodicalId":12718,"journal":{"name":"genesis","volume":"63 1","pages":""},"PeriodicalIF":2.4,"publicationDate":"2025-02-26","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143489841","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Meet Our Editorial Board—Genesis. An Interview With, Mark Lewandoski, National Cancer Institute, Maryland, USA 见见我们的编辑委员会——创世纪。采访马克·莱万多斯基,美国马里兰州国家癌症研究所
IF 2.4 4区 生物学
genesis Pub Date : 2025-02-26 DOI: 10.1002/dvg.70007
Mark Lewandoski, Paul Trevorrow
{"title":"Meet Our Editorial Board—Genesis. An Interview With, Mark Lewandoski, National Cancer Institute, Maryland, USA","authors":"Mark Lewandoski,&nbsp;Paul Trevorrow","doi":"10.1002/dvg.70007","DOIUrl":"https://doi.org/10.1002/dvg.70007","url":null,"abstract":"","PeriodicalId":12718,"journal":{"name":"genesis","volume":"63 1","pages":""},"PeriodicalIF":2.4,"publicationDate":"2025-02-26","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143489969","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Unraveling the Mechanisms That Regulate Osteoclast Differentiation: A Review of Current Advances 揭示调节破骨细胞分化的机制:综述当前进展
IF 2.4 4区 生物学
genesis Pub Date : 2025-02-17 DOI: 10.1002/dvg.70012
Sai Zhang, Meng Gao, Shuzhe Song, Tongdan Zhao, Bianhua Zhou, Hongwei Wang, Weishun Tian, Wenpeng Zhao, Jing Zhao
{"title":"Unraveling the Mechanisms That Regulate Osteoclast Differentiation: A Review of Current Advances","authors":"Sai Zhang,&nbsp;Meng Gao,&nbsp;Shuzhe Song,&nbsp;Tongdan Zhao,&nbsp;Bianhua Zhou,&nbsp;Hongwei Wang,&nbsp;Weishun Tian,&nbsp;Wenpeng Zhao,&nbsp;Jing Zhao","doi":"10.1002/dvg.70012","DOIUrl":"https://doi.org/10.1002/dvg.70012","url":null,"abstract":"<div>\u0000 \u0000 <p>Osteoporosis is a metabolic bone disease primarily caused by a decreased bone formation and increased bone resorption. Osteoclasts are a special class of terminally differentiated cells that play an important role in normal bone remodeling and bone loss in osteoporosis as well as in a variety of osteolytic diseases. Osteoclasts can be differentiated from monocyte–macrophage cells of the hematopoietic system; they are the key cells in bone resorption. Osteoclast formation and differentiation are regulated by various cytokines and transcription factors. In this review, we summarize recent advances in research on the regulation of osteoclast differentiation and function by factors such as M-CSF, RANKL, AP-1, NFATC1, MITF, and PU.1. Understanding these cytokines and transcription factors can not only help identify targets for osteoclast differentiation but also aid in intervening in the treatment of osteoclast-related diseases.</p>\u0000 </div>","PeriodicalId":12718,"journal":{"name":"genesis","volume":"63 1","pages":""},"PeriodicalIF":2.4,"publicationDate":"2025-02-17","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143424119","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
A New Targeted Transgenic Mouse Line for the Study of Protocadherin γC4 研究原钙粘蛋白γ - c4的新靶向转基因小鼠系
IF 2.4 4区 生物学
genesis Pub Date : 2025-02-09 DOI: 10.1002/dvg.70010
Cathy M. McLeod, Camille M. Hanes, Leah C. Fuller, Samjhana Bhandari, Hannah G. Lanthier, Robert W. Burgess, Joshua A. Weiner, Andrew M. Garrett
{"title":"A New Targeted Transgenic Mouse Line for the Study of Protocadherin γC4","authors":"Cathy M. McLeod,&nbsp;Camille M. Hanes,&nbsp;Leah C. Fuller,&nbsp;Samjhana Bhandari,&nbsp;Hannah G. Lanthier,&nbsp;Robert W. Burgess,&nbsp;Joshua A. Weiner,&nbsp;Andrew M. Garrett","doi":"10.1002/dvg.70010","DOIUrl":"https://doi.org/10.1002/dvg.70010","url":null,"abstract":"<div>\u0000 \u0000 <p>The γ-protocadherins (γ-Pcdhs) comprise 22 homophilic cell adhesion molecule isoforms, expressed from the <i>Pcdhg</i> gene cluster via promoter choice mechanisms that serve many crucial functions during neural development. Emerging evidence supports the hypothesis that distinct isoforms have unique functions. The γC4 isoform, which is expressed from the <i>Pcdhgc4</i> promoter and includes its unique variable exon, is the sole γ-Pcdh isoform essential for the postnatal survival in mice. Here we describe a new mouse line (<i>C4-GFP</i>) in which <i>Pcdhgc4</i> with a C-terminal GFP tag is expressed from the <i>Rosa26</i> locus following excision of a lox-Stop-lox cassette by Cre recombinase. We report that restricted expression of this transgene in the nervous system using <i>Nestin-Cre</i> is sufficient to rescue the neonatal lethality of mice mutant for <i>Pcdhgc4</i>. This new line will be a vital tool for dissecting mechanisms underlying the functions of this essential cell adhesion molecule gene, mutations in which have been associated with neurodevelopmental disorders in humans.</p>\u0000 </div>","PeriodicalId":12718,"journal":{"name":"genesis","volume":"63 1","pages":""},"PeriodicalIF":2.4,"publicationDate":"2025-02-09","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143379975","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Meet Our Editorial Board—Genesis. An Interview With, Susan Mackem, National Cancer Institute, Maryland, USA 见见我们的编辑委员会——创世纪。采访美国马里兰州国家癌症研究所的苏珊·麦克姆。
IF 2.4 4区 生物学
genesis Pub Date : 2025-01-29 DOI: 10.1002/dvg.70011
Paul Trevorrow, Susan Mackem
{"title":"Meet Our Editorial Board—Genesis. An Interview With, Susan Mackem, National Cancer Institute, Maryland, USA","authors":"Paul Trevorrow,&nbsp;Susan Mackem","doi":"10.1002/dvg.70011","DOIUrl":"10.1002/dvg.70011","url":null,"abstract":"","PeriodicalId":12718,"journal":{"name":"genesis","volume":"62 6","pages":""},"PeriodicalIF":2.4,"publicationDate":"2025-01-29","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143068659","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
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