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A comparison of acceptability of contraceptive vaginal rings, pills, and injectables among cisgender women in Kenya and Zimbabwe: protocol for a mixed-methods study. 肯尼亚和津巴布韦顺性别妇女对阴道避孕环、避孕药和注射剂的可接受性比较:一项混合方法研究方案。
Gates Open Research Pub Date : 2025-03-03 eCollection Date: 2025-01-01 DOI: 10.12688/gatesopenres.16315.1
Chelsea B Polis, Francis O Obare, Irene V Bruce, Cynthia Banda, Lisa B Haddad, Antwanette Heyns, Petros Isaakidis, Mercy Kamupira, Terrance Kufakunesu, Zachary A Kwena, Farai Machinga, Regina F Magore, Aleck Mapangire, Mercy Marimirofa, Matheus Mathipa, Sanyukta Mathur, Mary Mudavanhu, Tatenda P Mujuru, Prisca Mutero, Betty Njoroge, Collen Nyatsambo, Sarah Okumu, Leah Omondi, Tevyne Omondi, Marlena G Plagianos, Greshon Rota, Samuel Sithole, Bruce Variano, J Brady Burnett-Zieman, Petina Musara, George Odwe, Gerald Hangaika, Serah Gitome, Elizabeth A Bukusi, Kuziwa Kuwenyi
{"title":"A comparison of acceptability of contraceptive vaginal rings, pills, and injectables among cisgender women in Kenya and Zimbabwe: protocol for a mixed-methods study.","authors":"Chelsea B Polis, Francis O Obare, Irene V Bruce, Cynthia Banda, Lisa B Haddad, Antwanette Heyns, Petros Isaakidis, Mercy Kamupira, Terrance Kufakunesu, Zachary A Kwena, Farai Machinga, Regina F Magore, Aleck Mapangire, Mercy Marimirofa, Matheus Mathipa, Sanyukta Mathur, Mary Mudavanhu, Tatenda P Mujuru, Prisca Mutero, Betty Njoroge, Collen Nyatsambo, Sarah Okumu, Leah Omondi, Tevyne Omondi, Marlena G Plagianos, Greshon Rota, Samuel Sithole, Bruce Variano, J Brady Burnett-Zieman, Petina Musara, George Odwe, Gerald Hangaika, Serah Gitome, Elizabeth A Bukusi, Kuziwa Kuwenyi","doi":"10.12688/gatesopenres.16315.1","DOIUrl":"10.12688/gatesopenres.16315.1","url":null,"abstract":"<p><strong>Background: </strong>Expanding contraceptive options could better meet users' diverse needs and preferences. Annovera <sup>®</sup> is a contraceptive vaginal ring that provides a year of pregnancy prevention while remaining under user control and allowing for regular menstrual cycles. This method may also help to reduce burdens on some health care and supply chain systems. However, knowledge gaps exist regarding initial and ongoing acceptability of contraceptive vaginal rings in African settings.</p><p><strong>Methods: </strong>We will undertake an open-label, non-randomized, two-arm, parallel clinical acceptability study with an embedded qualitative component, based in clinics providing contraceptive services in Kenya and Zimbabwe. Women aged 18-45 interested in newly initiating or switching contraception will choose from among all available contraceptive options, including Annovera. We aim to enroll 200 participants selecting Annovera and 200 participants selecting either contraceptive injectables or pills. We will compare method uptake, continuation, and satisfaction over one year. Participants will complete questionnaires administered by study staff during two in-person visits (a screening/enrollment visit, and an end of study visit after 52 weeks of method use or at discontinuation) and four phone appointments (at 4, 12, 24, and 36 weeks of use). We will evaluate used rings for discoloration and residual drug levels. The qualitative component involve in-depth interviews with women in the clinical study, their sexual partners, and their service providers, to further examine drivers of and barriers to interest in and use of contraceptive vaginal rings.</p><p><strong>Discussion: </strong>This study will explore acceptability of contraceptive vaginal rings in 'real-world' contraceptive service settings in two African countries. Findings will be based on actual ring use and contextualized via comparison to two other commonly available methods. As vaginal rings are being considered for multiple reproductive health indications, this work can fill key knowledge gaps and empower decision-makers with information needed to inform future investments in reproductive health.</p>","PeriodicalId":12593,"journal":{"name":"Gates Open Research","volume":"9 ","pages":"5"},"PeriodicalIF":0.0,"publicationDate":"2025-03-03","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11876155/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143556467","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Design and validation of a low-cost sugar-feeder for resource-poor insectaries. 为资源贫乏的昆虫设计和验证一种低成本的糖饲料。
Gates Open Research Pub Date : 2025-03-03 eCollection Date: 2025-01-01 DOI: 10.12688/gatesopenres.16314.1
Zachary Thomas Stavrou-Dowd, Clair Rose, Álvaro Acosta-Serrano, Lee Rafuse Haines
{"title":"Design and validation of a low-cost sugar-feeder for resource-poor insectaries.","authors":"Zachary Thomas Stavrou-Dowd, Clair Rose, Álvaro Acosta-Serrano, Lee Rafuse Haines","doi":"10.12688/gatesopenres.16314.1","DOIUrl":"10.12688/gatesopenres.16314.1","url":null,"abstract":"<p><strong>Background: </strong>The emergence of insecticide resistance in insects has led researchers to develop new control tools so that historic gains made in reducing disease transmission are not lost. Attractive targeted sugar baits (ATSBs) are a vector control tool being widely trialled to target insects that feed on plant sugars and blood. We designed a field-friendly, economical and more environmentally responsible sugar feeder for maintaining mosquito colonies and screening potential ATSB candidates.</p><p><strong>Methods: </strong>We simultaneously tested, in both male and female <i>Anopheles gambiae</i> mosquitoes, the effect of adding three water-soluble medical and food dyes (Allura Red, fluorescein and tartrazine) to the sugar solution to identify those insects that had ingested sugar from the feeder. To test feeder efficacy to deliver a toxic substance, we assessed the killing using boric acid, which kills both male and female mosquitoes when ingested. Using microscopy techniques compatible with fieldwork, including the use of a mobile phone camera, we documented the efficacy and tissue specificity of the dyes on mosquitoes after they were continuously fed dyed sugar solutions.</p><p><strong>Results: </strong>The easy-to-construct sugar feeder is an economical option for testing the efficacy of ATSB components on <i>Anopheles gambiae</i> mosquitoes <i>.</i> Allura Red AC was the preferred dye as it has low toxicity to mosquitoes and allows the researcher to quickly visualise the imbibed sugar meal within the abdomen. Feeding 1% fluorescein dye, but not 0.1%, for longer than five days induced systemic dye distribution, where the mosquito's wing veins, antennae and legs brightly fluoresced when examined by a handheld black light torch (395-400nm emission).</p><p><strong>Discussion: </strong>Developing an affordable sugar feeder to maintain insectary-reared insects and test the efficacy of ATSB candidates involves designing a dye-labelled sugar bait station that is of low-toxicity, reusable and easy to construct using components available in low resource settings such as field stations.</p>","PeriodicalId":12593,"journal":{"name":"Gates Open Research","volume":"9 ","pages":"6"},"PeriodicalIF":0.0,"publicationDate":"2025-03-03","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11876154/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143556539","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Toward person-centred measures of contraceptive demand: a systematic review of the relationship between intentions to use and actual use of contraception. 朝向以人为中心的避孕需求测量:对避孕药具使用意图和实际使用之间关系的系统审查。
Gates Open Research Pub Date : 2025-02-28 eCollection Date: 2024-01-01 DOI: 10.12688/gatesopenres.15078.3
Victoria Boydell, Kelsey Quinn Wright, Shatha Elnakib, Christine Galavotti
{"title":"Toward person-centred measures of contraceptive demand: a systematic review of the relationship between intentions to use and actual use of contraception.","authors":"Victoria Boydell, Kelsey Quinn Wright, Shatha Elnakib, Christine Galavotti","doi":"10.12688/gatesopenres.15078.3","DOIUrl":"https://doi.org/10.12688/gatesopenres.15078.3","url":null,"abstract":"<p><strong>Background: </strong>Understanding people's interest in using modern contraception is critical to ensuring programs align with people's preferences and needs. Current measures of demand for contraception are misinterpreted. More direct measures of intention to use (ITU) contraception do exist but remain underexplored. This systematic review examines the relationship between intention to use and actual use of contraception.</p><p><strong>Methods: </strong>We searched PubMed, PsycInfo, Web of Science, and the Cochrane Collaboration to identify studies published from 1975-2020 that: (1) examined contraceptive behaviour, (2) included measures of ITU and future contraceptive use, and (3) included at least one quantitative measure of association between ITU and actual use. The inclusion criteria were: 1) examined contraceptive behaviour (excluding condom use only), (2) included disaggregated integral measures of ITU contraceptives and later contraceptive use, (3) included at least one quantitative measure of the association between ITU contraceptives and actual contraceptive use, (4) study population was women of reproductive age, (5) were peer-reviewed, and (6) written in English.</p><p><strong>Results: </strong>10 prospective cohort studies met the inclusion criteria; these provided 28,749 person-years of data (N=10,925). Although we could pool the data for unadjusted odds ratios, a metanalysis was not possible. We calculated that 6 of the 10 studies indicated significant, increased, unadjusted odds of subsequent contraceptive use after reporting ITU. Of those, 3 study analyses reported significant, positive adjusted odds ratios for the relationship between intention to use and later contraceptive use across varying covariates. The range of confounding factors, particularly around sub-populations, points to the need for more research so that a meta-analysis can be done in the future.</p><p><strong>Conclusions: </strong>People's self-reported ITU contraception has the potential to be a strong predictor of subsequent contraceptive use. Few studies directly examined the relationship between ITU and contraceptive uptake and recruitment was primarily pregnant or postpartum samples.</p>","PeriodicalId":12593,"journal":{"name":"Gates Open Research","volume":"8 ","pages":"1"},"PeriodicalIF":0.0,"publicationDate":"2025-02-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11634881/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144625910","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Profile: The Kenya Multi-Site Serosurveillance (KEMIS) collaboration. 简介:肯尼亚多站点服务监测(KEMIS)合作。
Gates Open Research Pub Date : 2025-02-27 eCollection Date: 2024-01-01 DOI: 10.12688/gatesopenres.15569.2
E Wangeci Kagucia, Shirine Voller, Abdhalah K Ziraba, Godfrey Bigogo, Patrick K Munywoki, Kimani Makobu, D James Nokes, James Nyagwange, Cameline Orlendo, Donald Akech, Antipa Sigilai, Clayton Onyango, Bonventure Juma, Amy Herman-Roloff, Peninah Munyua, Caroline Apondi, Shirley Lidechi, Allan Audi, Alice Ouma, George Aol, Thomas Misore, Caroline Nasimiyu, Dickens Onyango, Terrence Lo, Kadondi Kasera, Rose Jalang'o, Leonard Kingwara, Ifedayo Adetifa, Anthony O Etyang, George Warimwe, Ambrose Agweyu, J Anthony G Scott
{"title":"Profile: The Kenya Multi-Site Serosurveillance (KEMIS) collaboration.","authors":"E Wangeci Kagucia, Shirine Voller, Abdhalah K Ziraba, Godfrey Bigogo, Patrick K Munywoki, Kimani Makobu, D James Nokes, James Nyagwange, Cameline Orlendo, Donald Akech, Antipa Sigilai, Clayton Onyango, Bonventure Juma, Amy Herman-Roloff, Peninah Munyua, Caroline Apondi, Shirley Lidechi, Allan Audi, Alice Ouma, George Aol, Thomas Misore, Caroline Nasimiyu, Dickens Onyango, Terrence Lo, Kadondi Kasera, Rose Jalang'o, Leonard Kingwara, Ifedayo Adetifa, Anthony O Etyang, George Warimwe, Ambrose Agweyu, J Anthony G Scott","doi":"10.12688/gatesopenres.15569.2","DOIUrl":"10.12688/gatesopenres.15569.2","url":null,"abstract":"<p><p>The Kenya Multi Site Serosurveillance (KEMIS) collaboration set out to implement an integrated, nationally representative, population-based program of serological surveillance for past infection for a number of important infectious diseases in Kenya. The project started in December 2021 and built on a portfolio of SARS-CoV-2 research conducted in 2020 and 2021. In this profile paper, we describe the background of the KEMIS collaboration, its aim and objectives, the Health and Demographic Surveillance System sites that were involved in data collection, and the key activities undertaken. We also explain how we established governance and management of the KEMIS collaboration, and reflect on opportunities, challenges, lessons learned, and future directions.</p>","PeriodicalId":12593,"journal":{"name":"Gates Open Research","volume":"8 ","pages":"60"},"PeriodicalIF":0.0,"publicationDate":"2025-02-27","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12149407/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144265973","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Developing and evaluating human-centered design solutions for enhancing maternal health service utilization among vulnerable pregnant women in Oromia, Ethiopia: Study protocol for a quasi-experimental study. 制定和评估以人为本的设计解决方案,以提高埃塞俄比亚奥罗米亚弱势孕妇对孕产妇保健服务的利用:准实验研究的研究方案。
Gates Open Research Pub Date : 2025-02-21 eCollection Date: 2024-01-01 DOI: 10.12688/gatesopenres.16277.3
Bee-Ah Kang, Habtamu Tamene, Yihunie Lakew, Daryl Stephens, Rajiv Rimal
{"title":"Developing and evaluating human-centered design solutions for enhancing maternal health service utilization among vulnerable pregnant women in Oromia, Ethiopia: Study protocol for a quasi-experimental study.","authors":"Bee-Ah Kang, Habtamu Tamene, Yihunie Lakew, Daryl Stephens, Rajiv Rimal","doi":"10.12688/gatesopenres.16277.3","DOIUrl":"10.12688/gatesopenres.16277.3","url":null,"abstract":"<p><strong>Background: </strong>Disproportionate uptake of and access to maternal and child health services remain significant challenges across and within countries. Differing geographic, economic, environmental, and social factors contribute to varying degrees of vulnerabilities among individuals, which manifest as disparities in maternal and newborn health outcomes. Designing solutions according to need is vital to improve maternal and child health outcomes. In this paper, we describe our study protocol on developing and evaluating the effectiveness of human-centered design (HCD) solutions to improve maternal health service uptake among vulnerable pregnant women in rural areas of Ethiopia.</p><p><strong>Methods: </strong>The study has two distinct phases. In Phase 1, HCD solutions were developed through co-design workshops with vulnerable pregnant women and key stakeholders. Final solutions included home visit education, audio programs promoting couple discussion, and print materials, implemented in collaboration with community health workers and health officers. A community-based, quasi-experimental, mixed-method study design was used to assess differences between intervention and control arms. A panel sample was enrolled after screening for pregnancy and vulnerability level and surveyed at baseline and midline in Phase 1. Phase 2 adopts an identical design approach with a focus on refining Phase 1 solutions. Newly recruited pregnant women will receive refined solutions for six months, which will be evaluated using post-only end-line surveys and in-depth interviews.</p><p><strong>Conclusions and implications: </strong>Our sequential approach to evaluating initial solutions, which in turn will inform the enhancement of solutions, will provide practical insights into how solutions are accepted among vulnerable women and how they can be better integrated into women's lives and health systems. This will inform equity-focused practice and policies targeting populations experiencing greater barriers to accessing care and provide insights into system strengthening in rural areas. Our findings will be disseminated to the Ethiopian Ministry of Health and its partners to inform large-scale implementation at the national level.</p>","PeriodicalId":12593,"journal":{"name":"Gates Open Research","volume":"8 ","pages":"93"},"PeriodicalIF":0.0,"publicationDate":"2025-02-21","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11723881/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142970409","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Evaluation of the feasibility, acceptability, and impact of Group Antenatal Care at the health post level on continuation in antenatal care and facility based delivery in Ethiopia using a cluster randomized stepped-wedge design: Study protocol. 使用聚类随机楔形设计评估卫生站一级群体产前护理对埃塞俄比亚产前护理和设施分娩的延续的可行性、可接受性和影响:研究方案。
Gates Open Research Pub Date : 2025-01-31 eCollection Date: 2024-01-01 DOI: 10.12688/gatesopenres.15190.3
Walelegn W Yallew, Rediet Fasil, Della Berhanu, Konjit Wolde, Dedefo Teshite, Reena Sethi, Gayane Yenokyan, Yenealem Woldemariam, Stephanie Suhowatsky, Anne Hyre, Lisa Noguchi, Alemayehu Worku
{"title":"Evaluation of the feasibility, acceptability, and impact of Group Antenatal Care at the health post level on continuation in antenatal care and facility based delivery in Ethiopia using a cluster randomized stepped-wedge design: Study protocol.","authors":"Walelegn W Yallew, Rediet Fasil, Della Berhanu, Konjit Wolde, Dedefo Teshite, Reena Sethi, Gayane Yenokyan, Yenealem Woldemariam, Stephanie Suhowatsky, Anne Hyre, Lisa Noguchi, Alemayehu Worku","doi":"10.12688/gatesopenres.15190.3","DOIUrl":"10.12688/gatesopenres.15190.3","url":null,"abstract":"<p><strong>Background: </strong>Adequate antenatal care (ANC) and facility-based delivery are linked to improved maternal and neonatal outcomes. Adequate ANC attendance and facility birth rates are increasing in Ethiopia but remain well below national goals and global recommendations. Group ANC (G-ANC), when implemented at higher-level facilities, is associated with improved quality and experience of ANC and increased ANC retention and facility-based delivery. The objectives of this study are to evaluate the acceptability, feasibility, and effectiveness of G-ANC delivered by health extension workers at the health-post level compared to conventional ANC on ANC attendance and facility-based delivery.</p><p><strong>Methods: </strong>Group ANC will be piloted in five purposively selected health posts. The study design is a stepped-wedge trial to be conducted in 36 health posts within the catchment of six health centers, with randomization of the order of the intervention introduction done at the health-center level (clusters). The design includes three time periods: a six-month control period with no G-ANC implementation, followed by another six-month period when G-ANC will be introduced in half (n=18) of the study health posts, then a final six-month period when G-ANC will be implemented in the remaining 18 health posts. Each health post will form one cohort and conduct six monthly G-ANC meetings on a fixed day/time. The study will use quantitative and qualitative data collection approaches. The study has \"pause and reflect\" points designed for intervention iteration before rolling out to the next set of sites. The primary outcomes are the proportion of women with at least four ANC visits and the proportion who delivered in a health facility. Qualitative research will be conducted using in-depth interviews with pregnant women, health workers, facility managers, and regional health managers. The study will enroll 770 women across all phases.</p><p><strong>Conclusions: </strong>The study will inform decision-makers locally and globally on whether G-ANC is a feasible service delivery model at the health-post level. Effectiveness of G-ANC at increasing ANC retention and facility-based delivery and its acceptability to pregnant women and health extension workers will be reported. Registration NCT05054491, ClinicalTrials.gov (September 23, 2021).</p>","PeriodicalId":12593,"journal":{"name":"Gates Open Research","volume":"8 ","pages":"29"},"PeriodicalIF":0.0,"publicationDate":"2025-01-31","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11813170/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144625908","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Automated post-run analysis of arrayed quantitative PCR amplification curves using machine learning. 使用机器学习的阵列定量PCR扩增曲线的自动运行后分析。
Gates Open Research Pub Date : 2025-01-20 eCollection Date: 2025-01-01 DOI: 10.12688/gatesopenres.16313.1
Ben J Brintz, Darwin J Operario, David Garrett Brown, Shanrui Wu, Lan Wang, Eric R Houpt, Daniel T Leung, Jie Liu, James A Platts-Mills
{"title":"Automated post-run analysis of arrayed quantitative PCR amplification curves using machine learning.","authors":"Ben J Brintz, Darwin J Operario, David Garrett Brown, Shanrui Wu, Lan Wang, Eric R Houpt, Daniel T Leung, Jie Liu, James A Platts-Mills","doi":"10.12688/gatesopenres.16313.1","DOIUrl":"10.12688/gatesopenres.16313.1","url":null,"abstract":"<p><strong>Background: </strong>The TaqMan Array Card (TAC) is an arrayed, high-throughput qPCR platform that can simultaneously detect multiple targets in a single reaction. However, the manual post-run analysis of TAC data is time consuming and subject to interpretation. We sought to automate the post-run analysis of TAC data using machine learning models.</p><p><strong>Methods: </strong>We used 165,214 qPCR amplification curves from two studies to train and test two eXtreme Gradient Boosting (XGBoost) models. Previous manual analyses of the amplification curves by experts in qPCR analysis were used as the gold standard. First, a classification model predicted whether amplification occurred or not, and if so, a second model predicted the cycle threshold (Ct) value. We used 5-fold cross-validation to tune the models and assessed performance using accuracy, sensitivity, specificity, positive predictive value (PPV), negative predictive value (NPV), and mean absolute error (MAE). For external validation, we used 1,472 reactions previously analyzed by 17 laboratory scientists as part of an external quality assessment for a multisite study.</p><p><strong>Results: </strong>In internal validation, the classification model achieved an accuracy of 0.996, sensitivity of 0.997, specificity of 0.993, PPV of 0.998, and NPV of 0.991. The Ct prediction model achieved a MAE of 0.590. In external validation, the automated analysis achieved an accuracy of 0.997 and a MAE of 0.611, and the automated analysis was more accurate than manual analyses by 14 of the 17 laboratory scientists.</p><p><strong>Conclusions: </strong>We automated the post-run analysis of highly-arrayed qPCR data using machine learning models with high accuracy in comparison to a manual gold standard. This approach has the potential to save time and improve reproducibility in laboratories using the TAC platform and other high-throughput qPCR approaches.</p>","PeriodicalId":12593,"journal":{"name":"Gates Open Research","volume":"9 ","pages":"1"},"PeriodicalIF":0.0,"publicationDate":"2025-01-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11756513/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143028282","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
An Open Letter on Advancing HIV prevention: Augmenting an ecosystem-based approach to understand prevention decision-making. 一封关于推进艾滋病毒预防的公开信:加强基于生态系统的方法来理解预防决策。
Gates Open Research Pub Date : 2025-01-13 eCollection Date: 2024-01-01 DOI: 10.12688/gatesopenres.16067.2
Nishan Gantayat, James Baer, Alok Gangaramany, Rosemary Pierce-Messick
{"title":"An Open Letter on Advancing HIV prevention: Augmenting an ecosystem-based approach to understand prevention decision-making.","authors":"Nishan Gantayat, James Baer, Alok Gangaramany, Rosemary Pierce-Messick","doi":"10.12688/gatesopenres.16067.2","DOIUrl":"10.12688/gatesopenres.16067.2","url":null,"abstract":"<p><p>In the last two decades, HIV programs have been able to avert millions of AIDS-related deaths and reduce HIV incidence. However, the 1.3 million new HIV infections in 2022 remain significantly above the UNAIDS target of fewer than 370,000 new infections by 2025. HIV programs worldwide also did not achieve the UN's 90-90-90 target for testing and treatment set for 2020. Within this broader picture, HIV continues to disproportionately affect key and at-risk populations, including gay men and other men who have sex with men, female sex workers, and adolescent girls and young women. As HIV incidence declines and biomedical advances continue, it will become critical for public-health practitioners to reach key and at-risk populations with prevention services and limit primary transmission. In this Open Letter, we focus on factors that influence uptake of HIV prevention products and thereby demand for HIV prevention products and services. These factors exist at three levels of the decision-making ecosystem - the individual level, interaction level and systemic level. We argue that approaching HIV prevention solely through the lens of these levels creates a static view of prevention decision-making. There is a need instead for a dynamic viewpoint that can mirror the changing contexts in which users find themselves and make prevention decisions. We demonstrate that the current ecosystem viewpoint is useful to understand the gaps that exist in program implementation, but does not provide adequate insights into the underlying behaviors that contribute to these gaps. To address this, we suggest an approach to include dynamic aspects of decision-making with factors that influence the individual's assessment of risk, their evaluation of the opportunities to use HIV prevention, and their effective use of prevention products.</p>","PeriodicalId":12593,"journal":{"name":"Gates Open Research","volume":"8 ","pages":"73"},"PeriodicalIF":0.0,"publicationDate":"2025-01-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11785587/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143079392","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
An exploration of unusual antimicrobial resistance phenotypes in Salmonella Typhi from Blantyre, Malawi reveals the ongoing role of IncHI1 plasmids. 对来自马拉维布兰太尔的伤寒沙门氏菌不寻常的抗菌素耐药性表型的探索揭示了IncHI1质粒的持续作用。
Gates Open Research Pub Date : 2024-12-23 eCollection Date: 2024-01-01 DOI: 10.12688/gatesopenres.16311.1
Allan Zuza, Alexander M Wailan, Catherine Anscombe, Nicholas A Feasey, Eva Heinz
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引用次数: 0
Unpacking WHO and CDC Bottle Bioassay Methods: A Comprehensive Literature Review and Protocol Analysis Revealing Key Outcome Predictors. 打开包装WHO和CDC瓶生物测定方法:全面的文献回顾和方案分析揭示关键结果预测因子。
Gates Open Research Pub Date : 2024-12-18 eCollection Date: 2024-01-01 DOI: 10.12688/gatesopenres.15433.2
Giorgio Praulins, Annabel Murphy-Fegan, Jack Gillespie, Frank Mechan, Katherine Gleave, Rosemary Lees
{"title":"Unpacking WHO and CDC Bottle Bioassay Methods: A Comprehensive Literature Review and Protocol Analysis Revealing Key Outcome Predictors.","authors":"Giorgio Praulins, Annabel Murphy-Fegan, Jack Gillespie, Frank Mechan, Katherine Gleave, Rosemary Lees","doi":"10.12688/gatesopenres.15433.2","DOIUrl":"10.12688/gatesopenres.15433.2","url":null,"abstract":"<p><strong>Background: </strong>Resistance monitoring is a key element in controlling vector-borne diseases. The World Health Organization (WHO) and Centres for Disease Control and Prevention (CDC) have each developed bottle bioassay methods for determining insecticide susceptibility in mosquito vectors which are used globally.</p><p><strong>Methods: </strong>This study aimed to identify variations in bottle bioassay methodologies and assess the potential impact on the data that is generated. Our approach involved a systematic examination of existing literature and protocols from WHO and CDC, with a focus on the specifics of reported methodologies, variation between versions, and reported outcomes. Building on this, we experimentally evaluated the impact of several variables on bioassay results.</p><p><strong>Results: </strong>Our literature review exposed a significant inconsistency in the how bioassay methods are reported, hindering reliable interpretation of data and the ability to compare results between studies. The experimental research provided further insight by specifically identifying two key factors that influence the outcomes of bioassays: mosquito dry weight and relative humidity (RH). This finding not only advances our comprehension of these assays but also underscores the importance of establishing precisely defined methodologies for resistance monitoring. The study also demonstrates the importance of controlling bioassay variables, noting the significant influence of wing length, as an indicator of mosquito size, on mortality rates in standardized bioassays.</p><p><strong>Conclusions: </strong>Generating data with improved protocol consistency and precision will not only deepen our understanding of resistance patterns but also better inform vector control measures. We call for continued research and collaboration to refine and build consensus on bioassay techniques, to help bolster the global effort against vector-borne diseases like malaria.</p>","PeriodicalId":12593,"journal":{"name":"Gates Open Research","volume":"8 ","pages":"56"},"PeriodicalIF":0.0,"publicationDate":"2024-12-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11335745/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144625911","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
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