FlyPub Date : 2022-12-01DOI: 10.1080/19336934.2021.1969220
Augusto Santos Rampasso, Patrick Michael O'Grady
{"title":"Standardized terminology and visual atlas of the external morphology and terminalia for the genus <i>Scaptomyza</i> (Diptera: Drosophilidae).","authors":"Augusto Santos Rampasso, Patrick Michael O'Grady","doi":"10.1080/19336934.2021.1969220","DOIUrl":"https://doi.org/10.1080/19336934.2021.1969220","url":null,"abstract":"ABSTRACT The genus Scaptomyza is one of the two Drosophilidae genera with Hawaiian endemic species. This genus is an excellent model for biogeographic studies since it is distributed throughout the majority of continents, including continental islands, the Hawaiian Islands, and many other remote oceanic islands. This genus currently comprises 273 described species, 148 of which are endemic to the Hawaiian Islands. However, most descriptions were published before efforts to standardizing the morphological terminology across the Diptera were made in the 1980’s. Since research groups developed their own set of terminologies independently, without considering homologies, multiple terms have been used to refer to the same characters. This is especially true for the male terminalia, which have remarkable modifications within the family Drosophilidae. We reviewed the Scaptomyza literature, in addition to other studies across the Drosophilidae and Diptera, compiled the English synonyms, and provided a visual atlas of each body part, indicating how to recognize the morphological characters. The goal of the present study is to facilitate species identification and propose preferred terms to be adopted for future Scaptomyza descriptions.","PeriodicalId":12128,"journal":{"name":"Fly","volume":null,"pages":null},"PeriodicalIF":1.2,"publicationDate":"2022-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8525988/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"39513254","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
FlyPub Date : 2022-12-01DOI: 10.1080/19336934.2022.2149204
Max Yang Lu, Stanislava Chtarbanova
{"title":"The role of micro RNAs (miRNAs) in the regulation of <i>Drosophila melanogaster</i>'s innate immunity.","authors":"Max Yang Lu, Stanislava Chtarbanova","doi":"10.1080/19336934.2022.2149204","DOIUrl":"https://doi.org/10.1080/19336934.2022.2149204","url":null,"abstract":"<p><p>MicroRNAs (miRNAs) are a class of small non-coding RNAs ~19-22 nt long which post-transcriptionally regulate gene expression. Their ability to exhibit dynamic expression patterns coupled with their wide variety of targets allows miRNAs to regulate many processes, including the innate immune response of <i>Drosophila melanogaster</i>. Recent studies have identified miRNAs in <i>Drosophila</i> which are differentially expressed during infection with different pathogens as well as miRNAs that may affect immune signalling when differentially expressed. This review provides an overview of miRNAswhich have been identified to play a role in the immune response of <i>Drosophila</i> through targeting of the Toll and IMD signalling pathways and other immune processes. It will also explore the role of miRNAs in fine-tuning the immune response in <i>Drosophila</i> and highlight current gaps in knowledge regarding the role of miRNAs in immunity and areas for further research.</p>","PeriodicalId":12128,"journal":{"name":"Fly","volume":null,"pages":null},"PeriodicalIF":1.2,"publicationDate":"2022-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9683055/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"10479262","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
FlyPub Date : 2022-12-01DOI: 10.1080/19336934.2022.2149209
Gary N Landis, Sebastian Ko, Oscar Peng, Brett Bognar, Michael Khmelkov, Hans S Bell, John Tower
{"title":"A screen of small molecule and genetic modulators of life span in female <i>Drosophila</i> identifies etomoxir, RH5849 and unanticipated temperature effects.","authors":"Gary N Landis, Sebastian Ko, Oscar Peng, Brett Bognar, Michael Khmelkov, Hans S Bell, John Tower","doi":"10.1080/19336934.2022.2149209","DOIUrl":"10.1080/19336934.2022.2149209","url":null,"abstract":"<p><p>Mifepristone increases life span in female <i>Drosophila melanogaster</i>, and its molecular target(s) remain unclear. Here small molecule and genetic interventions were tested for ability to mimic mifepristone, or to decrease life span in a way that can be rescued by mifepristone. Etomoxir inhibits lipid metabolism, and significantly increased life span in virgin and mated females, but not males, at 50 µM concentration. Pioglitazone is reported to activate both mammalian PPARγ and its <i>Drosophila</i> homolog Eip75B. Pioglitazone produced minor and inconsistent benefits for female <i>Drosophila</i> life span, and only at the lowest concentrations tested. Ecdysone is a <i>Drosophila</i> steroid hormone reported to regulate responses to mating, and RH5849 is a potent mimic of ecdysone. RH5849 reduced virgin female life span, and this was partly rescued by mifepristone. Mifepristone did not compete with RH5849 for activation of an ecdysone receptor (EcR)-responsive transgenic reporter, indicating that the relevant target for mifepristone is not EcR. The conditional GAL4/GAL80ts system was used in attempt to test the effect of an <i>Eip75B</i> RNAi construct on female life span. However, the 29°C temperature used for induction reduced or eliminated mating-induced midgut hypertrophy, the negative life span effects of mating, and the positive life span effects of mifepristone. Even when applied after mating was complete, a shift to 29°C temperature reduced mating-induced midgut hypertrophy by half, and the life span effects of mating by 4.8-fold. Taken together, these results identify promising small molecules for further analysis, and inform the design of experiments involving the GAL4/GAL80ts system.</p>","PeriodicalId":12128,"journal":{"name":"Fly","volume":null,"pages":null},"PeriodicalIF":2.4,"publicationDate":"2022-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9683069/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"10474700","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
FlyPub Date : 2022-12-01DOI: 10.1080/19336934.2022.2061834
Naoki Okamoto, Akira Watanabe
{"title":"Interorgan communication through peripherally derived peptide hormones in <i>Drosophila</i>.","authors":"Naoki Okamoto, Akira Watanabe","doi":"10.1080/19336934.2022.2061834","DOIUrl":"10.1080/19336934.2022.2061834","url":null,"abstract":"<p><p>In multicellular organisms, endocrine factors such as hormones and cytokines regulate development and homoeostasis through communication between different organs. For understanding such interorgan communications through endocrine factors, the fruit fly <i>Drosophila melanogaster</i> serves as an excellent model system due to conservation of essential endocrine systems between flies and mammals and availability of powerful genetic tools. In <i>Drosophila</i> and other insects, functions of neuropeptides or peptide hormones from the central nervous system have been extensively studied. However, a series of recent studies conducted in <i>Drosophila</i> revealed that peptide hormones derived from peripheral tissues also play critical roles in regulating multiple biological processes, including growth, metabolism, reproduction, and behaviour. Here, we summarise recent advances in understanding target organs/tissues and functions of peripherally derived peptide hormones in <i>Drosophila</i> and describe how these hormones contribute to various biological events through interorgan communications.</p>","PeriodicalId":12128,"journal":{"name":"Fly","volume":null,"pages":null},"PeriodicalIF":2.4,"publicationDate":"2022-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9067537/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9530994","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Notch Signalling Under Maternal-to-Zygotic Transition.","authors":"Tomoko Yamakawa, Elzava Yuslimatin Mujizah, Kenji Matsuno","doi":"10.1080/19336934.2022.2139981","DOIUrl":"https://doi.org/10.1080/19336934.2022.2139981","url":null,"abstract":"<p><p>The development of all animal embryos is initially directed by the gene products supplied by their mothers. With the progression of embryogenesis, the embryo's genome is activated to command subsequent developments. This transition, which has been studied in many model animals, is referred to as the Maternal-to-Zygotic Transition (MZT). In many organisms, including flies, nematodes, and sea urchins, genes involved in Notch signaling are extensively influenced by the MZT. This signaling pathway is highly conserved across metazoans; moreover, it regulates various developmental processes. Notch signaling defects are commonly associated with various human diseases. The maternal contribution of its factors was first discovered in flies. Subsequently, several genes were identified from mutant embryos with a phenotype similar to <i>Notch</i> mutants only upon the removal of the maternal contributions. Studies on these maternal genes have revealed various novel steps in the cascade of Notch signal transduction. Among these genes, <i>pecanex</i> and <i>almondex</i> have been functionally characterized in recent studies. Therefore, in this review, we will focus on the roles of these two maternal genes in Notch signaling and discuss future research directions on its maternal function.</p>","PeriodicalId":12128,"journal":{"name":"Fly","volume":null,"pages":null},"PeriodicalIF":1.2,"publicationDate":"2022-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9645253/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"10472596","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
FlyPub Date : 2022-12-01DOI: 10.1080/19336934.2021.1953364
Nikita Komarov, Simon G Sprecher
{"title":"The chemosensory system of the <i>Drosophila</i> larva: an overview of current understanding.","authors":"Nikita Komarov, Simon G Sprecher","doi":"10.1080/19336934.2021.1953364","DOIUrl":"https://doi.org/10.1080/19336934.2021.1953364","url":null,"abstract":"<p><p>Animals must sense their surroundings and be able to distinguish between relevant and irrelevant cues. An enticing area of research aims to uncover the mechanisms by which animals respond to chemical signals that constitute critical sensory input. In this review, we describe the principles of a model chemosensory system: the <i>Drosophila</i> larva. While distinct in many ways, larval behaviour is reminiscent of the dogmatic goals of life: to reach a stage of reproductive potential. It takes into account a number of distinct and identifiable parameters to ultimately provoke or modulate appropriate behavioural output. In this light, we describe current knowledge of chemosensory anatomy, genetic components, and the processing logic of chemical cues. We outline recent advancements and summarize the hypothesized neural circuits of sensory systems. Furthermore, we note yet-unanswered questions to create a basis for further investigation of molecular and systemic mechanisms of chemosensation in <i>Drosophila</i> and beyond.</p>","PeriodicalId":12128,"journal":{"name":"Fly","volume":null,"pages":null},"PeriodicalIF":1.2,"publicationDate":"2022-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8496535/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"39489322","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
FlyPub Date : 2022-12-01DOI: 10.1080/19336934.2022.2126259
Gina Hauptman, Marie C Reichert, Muna A Abdal Rhida, Timothy A Evans
{"title":"Characterization of enhancer fragments in <i>Drosophila robo2</i>.","authors":"Gina Hauptman, Marie C Reichert, Muna A Abdal Rhida, Timothy A Evans","doi":"10.1080/19336934.2022.2126259","DOIUrl":"10.1080/19336934.2022.2126259","url":null,"abstract":"<p><p>Receptor proteins of the Roundabout (Robo) family regulate axon guidance decisions during nervous system development. Among the three <i>Drosophila robo</i> family genes (<i>robo1, robo2</i> and <i>robo3), robo2</i> displays a dynamic expression pattern and regulates multiple axon guidance outcomes, including preventing midline crossing in some axons, promoting midline crossing in others, forming lateral longitudinal axon pathways, and regulating motor axon guidance. The identity and location of enhancer elements regulating <i>robo2's</i> complex and dynamic expression pattern in different neural cell types are unknown. Here, we characterize a set of 17 transgenic lines expressing GAL4 under the control of DNA sequences derived from noncoding regions in and around <i>robo2</i>, to identify enhancers controlling specific aspects of <i>robo2</i> expression in the embryonic ventral nerve cord. We identify individual fragments that confer expression in specific cell types where <i>robo2</i> is known to function, including early pioneer neurons, midline glia and lateral longitudinal neurons. Our results indicate that <i>robo2'</i>s dynamic expression pattern is specified by a combination of enhancer elements that are active in different subsets of cells. We show that <i>robo2's</i> expression in lateral longitudinal axons represents two genetically separable subsets of neurons, and compare their axon projections with each other and with Fasciclin II (FasII), a commonly used marker of longitudinal axon pathways. In addition, we provide a general description of each fragment's expression in embryonic tissues outside of the nervous system, to serve as a resource for other researchers interested in <i>robo2</i> expression and its functional roles outside the central nervous system.</p>","PeriodicalId":12128,"journal":{"name":"Fly","volume":null,"pages":null},"PeriodicalIF":2.4,"publicationDate":"2022-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://ftp.ncbi.nlm.nih.gov/pub/pmc/oa_pdf/3b/61/KFLY_16_2126259.PMC9559326.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"10478241","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
FlyPub Date : 2022-12-01DOI: 10.1080/19336934.2022.2076539
Yutaka Matsubayashi
{"title":"Dynamic movement and turnover of extracellular matrices during tissue development and maintenance.","authors":"Yutaka Matsubayashi","doi":"10.1080/19336934.2022.2076539","DOIUrl":"10.1080/19336934.2022.2076539","url":null,"abstract":"<p><p>Extracellular matrices (ECMs) are essential for the architecture and function of animal tissues. ECMs have been thought to be highly stable structures; however, too much stability of ECMs would hamper tissue remodelling required for organ development and maintenance. Regarding this conundrum, this article reviews multiple lines of evidence that ECMs are in fact rapidly moving and replacing components in diverse organisms including hydra, worms, flies, and vertebrates. Also discussed are how cells behave on/in such dynamic ECMs, how ECM dynamics contributes to embryogenesis and adult tissue homoeostasis, and what molecular mechanisms exist behind the dynamics. In addition, it is highlighted how cutting-edge technologies such as genome engineering, live imaging, and mathematical modelling have contributed to reveal the previously invisible dynamics of ECMs. The idea that ECMs are unchanging is to be changed, and ECM dynamics is emerging as a hitherto unrecognized critical factor for tissue development and maintenance.</p>","PeriodicalId":12128,"journal":{"name":"Fly","volume":null,"pages":null},"PeriodicalIF":2.4,"publicationDate":"2022-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9302511/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"10472232","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
FlyPub Date : 2022-12-01DOI: 10.1080/19336934.2022.2066952
Hiroki Nagai, Masayuki Miura, Yu-Ichiro Nakajima
{"title":"Cellular mechanisms underlying adult tissue plasticity in <i>Drosophila</i>.","authors":"Hiroki Nagai, Masayuki Miura, Yu-Ichiro Nakajima","doi":"10.1080/19336934.2022.2066952","DOIUrl":"https://doi.org/10.1080/19336934.2022.2066952","url":null,"abstract":"<p><p>Adult tissues in Metazoa dynamically remodel their structures in response to environmental challenges including sudden injury, pathogen infection, and nutritional fluctuation, while maintaining quiescence under homoeostatic conditions. This characteristic, hereafter referred to as adult tissue plasticity, can prevent tissue dysfunction and improve the fitness of organisms in continuous and/or severe change of environments. With its relatively simple tissue structures and genetic tools, studies using the fruit fly <i>Drosophila melanogaster</i> have provided insights into molecular mechanisms that control cellular responses, particularly during regeneration and nutrient adaptation. In this review, we present the current understanding of cellular mechanisms, stem cell proliferation, polyploidization, and cell fate plasticity, all of which enable adult tissue plasticity in various <i>Drosophila</i> adult organs including the midgut, the brain, and the gonad, and discuss the organismal strategy in response to environmental changes and future directions of the research.</p>","PeriodicalId":12128,"journal":{"name":"Fly","volume":null,"pages":null},"PeriodicalIF":1.2,"publicationDate":"2022-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9045823/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9546157","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
FlyPub Date : 2022-12-01DOI: 10.1080/19336934.2022.2058309
Eden W McQueen, Mehrnaz Afkhami, Joel Atallah, John M Belote, Nicolas Gompel, Yael Heifetz, Yoshitaka Kamimura, Shani C Kornhauser, John P Masly, Patrick O'Grady, Julianne Peláez, Mark Rebeiz, Gavin Rice, Ernesto Sánchez-Herrero, Maria Daniela Santos Nunes, Augusto Santos Rampasso, Sandra L Schnakenberg, Mark L Siegal, Aya Takahashi, Kentaro M Tanaka, Natascha Turetzek, Einat Zelinger, Virginie Courtier-Orgogozo, Masanori J Toda, Mariana F Wolfner, Amir Yassin
{"title":"A standardized nomenclature and atlas of the female terminalia of <i>Drosophila melanogaster</i>.","authors":"Eden W McQueen, Mehrnaz Afkhami, Joel Atallah, John M Belote, Nicolas Gompel, Yael Heifetz, Yoshitaka Kamimura, Shani C Kornhauser, John P Masly, Patrick O'Grady, Julianne Peláez, Mark Rebeiz, Gavin Rice, Ernesto Sánchez-Herrero, Maria Daniela Santos Nunes, Augusto Santos Rampasso, Sandra L Schnakenberg, Mark L Siegal, Aya Takahashi, Kentaro M Tanaka, Natascha Turetzek, Einat Zelinger, Virginie Courtier-Orgogozo, Masanori J Toda, Mariana F Wolfner, Amir Yassin","doi":"10.1080/19336934.2022.2058309","DOIUrl":"https://doi.org/10.1080/19336934.2022.2058309","url":null,"abstract":"<p><p>The model organism <i>Drosophila melanogaster</i> has become a focal system for investigations of rapidly evolving genital morphology as well as the development and functions of insect reproductive structures. To follow up on a previous paper outlining unifying terminology for the structures of the male terminalia in this species, we offer here a detailed description of the female terminalia of <i>D. melanogaster</i>. Informative diagrams and micrographs are presented to provide a comprehensive overview of the external and internal reproductive structures of females. We propose a collection of terms and definitions to standardize the terminology associated with the female terminalia in <i>D. melanogaster</i> and we provide a correspondence table with the terms previously used. Unifying terminology for both males and females in this species will help to facilitate communication between various disciplines, as well as aid in synthesizing research across publications within a discipline that has historically focused principally on male features. Our efforts to refine and standardize the terminology should expand the utility of this important model system for addressing questions related to the development and evolution of animal genitalia, and morphology in general.</p>","PeriodicalId":12128,"journal":{"name":"Fly","volume":null,"pages":null},"PeriodicalIF":1.2,"publicationDate":"2022-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9116418/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9654254","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}