FlyPub Date : 2022-12-01DOI: 10.1080/19336934.2022.2087484
Yohei Nitta, Atsushi Sugie
{"title":"Studies of neurodegenerative diseases using <i>Drosophila</i> and the development of novel approaches for their analysis.","authors":"Yohei Nitta, Atsushi Sugie","doi":"10.1080/19336934.2022.2087484","DOIUrl":"10.1080/19336934.2022.2087484","url":null,"abstract":"<p><p>The use of <i>Drosophila</i> in neurodegenerative disease research has contributed to the identification of modifier genes for the pathology. The basis for neurodegenerative disease occurrence in <i>Drosophila</i> is the conservation of genes across species and the ability to perform rapid genetic analysis using a compact brain. Genetic findings previously discovered in <i>Drosophila</i> can reveal molecular pathologies involved in human neurological diseases in later years. Disease models using <i>Drosophila</i> began to be generated during the development of genetic engineering. In recent years, results of reverse translational research using <i>Drosophila</i> have been reported. In this review, we discuss research on neurodegenerative diseases; moreover, we introduce various methods for quantifying neurodegeneration in <i>Drosophila</i>.</p>","PeriodicalId":12128,"journal":{"name":"Fly","volume":"16 1","pages":"275-298"},"PeriodicalIF":2.4,"publicationDate":"2022-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9336468/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"10472195","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
FlyPub Date : 2022-12-01DOI: 10.1080/19336934.2022.2088032
Samuel G Towarnicki, Neil A Youngson, Susan M Corley, Jus C St John, Richard G Melvin, Nigel Turner, Margaret J Morris, J William O Ballard
{"title":"Ancestral dietary change alters the development of <i>Drosophila</i> larvae through MAPK signalling.","authors":"Samuel G Towarnicki, Neil A Youngson, Susan M Corley, Jus C St John, Richard G Melvin, Nigel Turner, Margaret J Morris, J William O Ballard","doi":"10.1080/19336934.2022.2088032","DOIUrl":"https://doi.org/10.1080/19336934.2022.2088032","url":null,"abstract":"<p><p>Studies in a broad range of animal species have revealed phenotypes that are caused by ancestral life experiences, including stress and diet. Ancestral dietary macronutrient composition and quantity (over- and under-nutrition) have been shown to alter descendent growth, metabolism and behaviour. Molecules have been identified in gametes that are changed by ancestral diet and are required for transgenerational effects. However, there is less understanding of the developmental pathways altered by inherited molecules during the period between fertilization and adulthood. To investigate this non-genetic inheritance, we exposed great grand-parental and grand-parental generations to defined protein to carbohydrate (P:C) dietary ratios. Descendent developmental timing was consistently faster in the period between the embryonic and pupal stages when ancestors had a higher P:C ratio diet. Transcriptional analysis revealed extensive and long-lasting changes to the MAPK signalling pathway, which controls growth rate through the regulation of ribosomal RNA transcription. Pharmacological inhibition of both MAPK and rRNA pathways recapitulated the ancestral diet-induced developmental changes. This work provides insight into non-genetic inheritance between fertilization and adulthood.</p>","PeriodicalId":12128,"journal":{"name":"Fly","volume":"16 1","pages":"299-311"},"PeriodicalIF":1.2,"publicationDate":"2022-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9354765/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"10528622","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
FlyPub Date : 2022-12-01DOI: 10.1080/19336934.2022.2142460
Lydie Couturier, Juan Luna, Khalil Mazouni, Claire Mestdagh, Minh-Son Phan, Francis Corson, Francois Schweisguth
{"title":"HaloTag-based reporters for sparse labeling and cell tracking.","authors":"Lydie Couturier, Juan Luna, Khalil Mazouni, Claire Mestdagh, Minh-Son Phan, Francis Corson, Francois Schweisguth","doi":"10.1080/19336934.2022.2142460","DOIUrl":"https://doi.org/10.1080/19336934.2022.2142460","url":null,"abstract":"<p><p>Multiscale analysis of morphogenesis requires to follow and measure in real-time the <i>in vivo</i> behaviour of large numbers of individual cells over long period of time. Despite recent progress, the large-scale automated tracking of cells in developing embryos and tissues remains a challenge. Here we describe a genetic tool for the random and sparse labelling of individual cells in developing <i>Drosophila</i> tissues. This tool is based on the conditional expression of a nuclear HaloTag protein that can be fluorescently labelled upon the irreversible binding of a cell permeable synthetic ligand. While the slow maturation of genetically encoded fluorescent renders the tracking of individual cells difficult in rapidly dividing tissues, nuclear HaloTag proteins allowed for rapid labelling of individual cells in cultured imaginal discs. To study cell shape changes, we also produced an HaloTag version of the actin-bound protein LifeAct. Since sparse labelling facilitates cell tracking, nuclear HaloTag reporters will be useful for the single-cell analysis of fate dynamics in <i>Drosophila</i> tissues cultured <i>ex vivo.</i></p>","PeriodicalId":12128,"journal":{"name":"Fly","volume":"16 1","pages":"360-366"},"PeriodicalIF":1.2,"publicationDate":"2022-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9635558/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"10474465","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
FlyPub Date : 2022-12-01DOI: 10.1080/19336934.2022.2149209
Gary N Landis, Sebastian Ko, Oscar Peng, Brett Bognar, Michael Khmelkov, Hans S Bell, John Tower
{"title":"A screen of small molecule and genetic modulators of life span in female <i>Drosophila</i> identifies etomoxir, RH5849 and unanticipated temperature effects.","authors":"Gary N Landis, Sebastian Ko, Oscar Peng, Brett Bognar, Michael Khmelkov, Hans S Bell, John Tower","doi":"10.1080/19336934.2022.2149209","DOIUrl":"10.1080/19336934.2022.2149209","url":null,"abstract":"<p><p>Mifepristone increases life span in female <i>Drosophila melanogaster</i>, and its molecular target(s) remain unclear. Here small molecule and genetic interventions were tested for ability to mimic mifepristone, or to decrease life span in a way that can be rescued by mifepristone. Etomoxir inhibits lipid metabolism, and significantly increased life span in virgin and mated females, but not males, at 50 µM concentration. Pioglitazone is reported to activate both mammalian PPARγ and its <i>Drosophila</i> homolog Eip75B. Pioglitazone produced minor and inconsistent benefits for female <i>Drosophila</i> life span, and only at the lowest concentrations tested. Ecdysone is a <i>Drosophila</i> steroid hormone reported to regulate responses to mating, and RH5849 is a potent mimic of ecdysone. RH5849 reduced virgin female life span, and this was partly rescued by mifepristone. Mifepristone did not compete with RH5849 for activation of an ecdysone receptor (EcR)-responsive transgenic reporter, indicating that the relevant target for mifepristone is not EcR. The conditional GAL4/GAL80ts system was used in attempt to test the effect of an <i>Eip75B</i> RNAi construct on female life span. However, the 29°C temperature used for induction reduced or eliminated mating-induced midgut hypertrophy, the negative life span effects of mating, and the positive life span effects of mifepristone. Even when applied after mating was complete, a shift to 29°C temperature reduced mating-induced midgut hypertrophy by half, and the life span effects of mating by 4.8-fold. Taken together, these results identify promising small molecules for further analysis, and inform the design of experiments involving the GAL4/GAL80ts system.</p>","PeriodicalId":12128,"journal":{"name":"Fly","volume":"16 1","pages":"397-413"},"PeriodicalIF":2.4,"publicationDate":"2022-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9683069/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"10474700","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
FlyPub Date : 2022-12-01DOI: 10.1080/19336934.2022.2149204
Max Yang Lu, Stanislava Chtarbanova
{"title":"The role of micro RNAs (miRNAs) in the regulation of <i>Drosophila melanogaster</i>'s innate immunity.","authors":"Max Yang Lu, Stanislava Chtarbanova","doi":"10.1080/19336934.2022.2149204","DOIUrl":"https://doi.org/10.1080/19336934.2022.2149204","url":null,"abstract":"<p><p>MicroRNAs (miRNAs) are a class of small non-coding RNAs ~19-22 nt long which post-transcriptionally regulate gene expression. Their ability to exhibit dynamic expression patterns coupled with their wide variety of targets allows miRNAs to regulate many processes, including the innate immune response of <i>Drosophila melanogaster</i>. Recent studies have identified miRNAs in <i>Drosophila</i> which are differentially expressed during infection with different pathogens as well as miRNAs that may affect immune signalling when differentially expressed. This review provides an overview of miRNAswhich have been identified to play a role in the immune response of <i>Drosophila</i> through targeting of the Toll and IMD signalling pathways and other immune processes. It will also explore the role of miRNAs in fine-tuning the immune response in <i>Drosophila</i> and highlight current gaps in knowledge regarding the role of miRNAs in immunity and areas for further research.</p>","PeriodicalId":12128,"journal":{"name":"Fly","volume":"16 1","pages":"382-396"},"PeriodicalIF":1.2,"publicationDate":"2022-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9683055/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"10479262","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
FlyPub Date : 2022-12-01DOI: 10.1080/19336934.2022.2061834
Naoki Okamoto, Akira Watanabe
{"title":"Interorgan communication through peripherally derived peptide hormones in <i>Drosophila</i>.","authors":"Naoki Okamoto, Akira Watanabe","doi":"10.1080/19336934.2022.2061834","DOIUrl":"10.1080/19336934.2022.2061834","url":null,"abstract":"<p><p>In multicellular organisms, endocrine factors such as hormones and cytokines regulate development and homoeostasis through communication between different organs. For understanding such interorgan communications through endocrine factors, the fruit fly <i>Drosophila melanogaster</i> serves as an excellent model system due to conservation of essential endocrine systems between flies and mammals and availability of powerful genetic tools. In <i>Drosophila</i> and other insects, functions of neuropeptides or peptide hormones from the central nervous system have been extensively studied. However, a series of recent studies conducted in <i>Drosophila</i> revealed that peptide hormones derived from peripheral tissues also play critical roles in regulating multiple biological processes, including growth, metabolism, reproduction, and behaviour. Here, we summarise recent advances in understanding target organs/tissues and functions of peripherally derived peptide hormones in <i>Drosophila</i> and describe how these hormones contribute to various biological events through interorgan communications.</p>","PeriodicalId":12128,"journal":{"name":"Fly","volume":"16 1","pages":"152-176"},"PeriodicalIF":2.4,"publicationDate":"2022-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9067537/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9530994","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
FlyPub Date : 2022-12-01DOI: 10.1080/19336934.2022.2076539
Yutaka Matsubayashi
{"title":"Dynamic movement and turnover of extracellular matrices during tissue development and maintenance.","authors":"Yutaka Matsubayashi","doi":"10.1080/19336934.2022.2076539","DOIUrl":"10.1080/19336934.2022.2076539","url":null,"abstract":"<p><p>Extracellular matrices (ECMs) are essential for the architecture and function of animal tissues. ECMs have been thought to be highly stable structures; however, too much stability of ECMs would hamper tissue remodelling required for organ development and maintenance. Regarding this conundrum, this article reviews multiple lines of evidence that ECMs are in fact rapidly moving and replacing components in diverse organisms including hydra, worms, flies, and vertebrates. Also discussed are how cells behave on/in such dynamic ECMs, how ECM dynamics contributes to embryogenesis and adult tissue homoeostasis, and what molecular mechanisms exist behind the dynamics. In addition, it is highlighted how cutting-edge technologies such as genome engineering, live imaging, and mathematical modelling have contributed to reveal the previously invisible dynamics of ECMs. The idea that ECMs are unchanging is to be changed, and ECM dynamics is emerging as a hitherto unrecognized critical factor for tissue development and maintenance.</p>","PeriodicalId":12128,"journal":{"name":"Fly","volume":"16 1","pages":"248-274"},"PeriodicalIF":2.4,"publicationDate":"2022-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9302511/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"10472232","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Notch Signalling Under Maternal-to-Zygotic Transition.","authors":"Tomoko Yamakawa, Elzava Yuslimatin Mujizah, Kenji Matsuno","doi":"10.1080/19336934.2022.2139981","DOIUrl":"https://doi.org/10.1080/19336934.2022.2139981","url":null,"abstract":"<p><p>The development of all animal embryos is initially directed by the gene products supplied by their mothers. With the progression of embryogenesis, the embryo's genome is activated to command subsequent developments. This transition, which has been studied in many model animals, is referred to as the Maternal-to-Zygotic Transition (MZT). In many organisms, including flies, nematodes, and sea urchins, genes involved in Notch signaling are extensively influenced by the MZT. This signaling pathway is highly conserved across metazoans; moreover, it regulates various developmental processes. Notch signaling defects are commonly associated with various human diseases. The maternal contribution of its factors was first discovered in flies. Subsequently, several genes were identified from mutant embryos with a phenotype similar to <i>Notch</i> mutants only upon the removal of the maternal contributions. Studies on these maternal genes have revealed various novel steps in the cascade of Notch signal transduction. Among these genes, <i>pecanex</i> and <i>almondex</i> have been functionally characterized in recent studies. Therefore, in this review, we will focus on the roles of these two maternal genes in Notch signaling and discuss future research directions on its maternal function.</p>","PeriodicalId":12128,"journal":{"name":"Fly","volume":"16 1","pages":"347-359"},"PeriodicalIF":1.2,"publicationDate":"2022-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9645253/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"10472596","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
FlyPub Date : 2022-12-01DOI: 10.1080/19336934.2022.2126259
Gina Hauptman, Marie C Reichert, Muna A Abdal Rhida, Timothy A Evans
{"title":"Characterization of enhancer fragments in <i>Drosophila robo2</i>.","authors":"Gina Hauptman, Marie C Reichert, Muna A Abdal Rhida, Timothy A Evans","doi":"10.1080/19336934.2022.2126259","DOIUrl":"10.1080/19336934.2022.2126259","url":null,"abstract":"<p><p>Receptor proteins of the Roundabout (Robo) family regulate axon guidance decisions during nervous system development. Among the three <i>Drosophila robo</i> family genes (<i>robo1, robo2</i> and <i>robo3), robo2</i> displays a dynamic expression pattern and regulates multiple axon guidance outcomes, including preventing midline crossing in some axons, promoting midline crossing in others, forming lateral longitudinal axon pathways, and regulating motor axon guidance. The identity and location of enhancer elements regulating <i>robo2's</i> complex and dynamic expression pattern in different neural cell types are unknown. Here, we characterize a set of 17 transgenic lines expressing GAL4 under the control of DNA sequences derived from noncoding regions in and around <i>robo2</i>, to identify enhancers controlling specific aspects of <i>robo2</i> expression in the embryonic ventral nerve cord. We identify individual fragments that confer expression in specific cell types where <i>robo2</i> is known to function, including early pioneer neurons, midline glia and lateral longitudinal neurons. Our results indicate that <i>robo2'</i>s dynamic expression pattern is specified by a combination of enhancer elements that are active in different subsets of cells. We show that <i>robo2's</i> expression in lateral longitudinal axons represents two genetically separable subsets of neurons, and compare their axon projections with each other and with Fasciclin II (FasII), a commonly used marker of longitudinal axon pathways. In addition, we provide a general description of each fragment's expression in embryonic tissues outside of the nervous system, to serve as a resource for other researchers interested in <i>robo2</i> expression and its functional roles outside the central nervous system.</p>","PeriodicalId":12128,"journal":{"name":"Fly","volume":"16 1","pages":"312-346"},"PeriodicalIF":2.4,"publicationDate":"2022-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://ftp.ncbi.nlm.nih.gov/pub/pmc/oa_pdf/3b/61/KFLY_16_2126259.PMC9559326.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"10478241","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
FlyPub Date : 2022-12-01DOI: 10.1080/19336934.2022.2066952
Hiroki Nagai, Masayuki Miura, Yu-Ichiro Nakajima
{"title":"Cellular mechanisms underlying adult tissue plasticity in <i>Drosophila</i>.","authors":"Hiroki Nagai, Masayuki Miura, Yu-Ichiro Nakajima","doi":"10.1080/19336934.2022.2066952","DOIUrl":"https://doi.org/10.1080/19336934.2022.2066952","url":null,"abstract":"<p><p>Adult tissues in Metazoa dynamically remodel their structures in response to environmental challenges including sudden injury, pathogen infection, and nutritional fluctuation, while maintaining quiescence under homoeostatic conditions. This characteristic, hereafter referred to as adult tissue plasticity, can prevent tissue dysfunction and improve the fitness of organisms in continuous and/or severe change of environments. With its relatively simple tissue structures and genetic tools, studies using the fruit fly <i>Drosophila melanogaster</i> have provided insights into molecular mechanisms that control cellular responses, particularly during regeneration and nutrient adaptation. In this review, we present the current understanding of cellular mechanisms, stem cell proliferation, polyploidization, and cell fate plasticity, all of which enable adult tissue plasticity in various <i>Drosophila</i> adult organs including the midgut, the brain, and the gonad, and discuss the organismal strategy in response to environmental changes and future directions of the research.</p>","PeriodicalId":12128,"journal":{"name":"Fly","volume":"16 1","pages":"190-206"},"PeriodicalIF":1.2,"publicationDate":"2022-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9045823/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9546157","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}