JDS communications最新文献

{"title":"Effects of space allowance on patterns of activity in group-housed dairy calves","authors":"","doi":"10.3168/jdsc.2023-0486","DOIUrl":"10.3168/jdsc.2023-0486","url":null,"abstract":"<div><p>With increasing use of social housing for dairy calves, there is a need to refine housing management practices that influence animal behavior and may affect welfare. Our aim was to assess the effect of pen space allowance on activity patterns and pen space use. Holstein heifer calves were group-housed (n = 6 pens; 5 calves/pen) at 14 d ± 2.8 d of age (mean ± SD). After a 7-d adaptation, each pen was exposed to 3 different space allowances (3.7, 4.6, and 5.6 m²/calf) in a random order, according to a replicated Latin square design with three 7-d periods (period 1, d 22–28; period 2, d 29–35; and period 3, d 36–42). Calves were provided milk replacer (12 L/d) ad libitum via an automated milk feeder and gradually weaned over 10 d, beginning at 48 ± 3 d of age. Using leg-based accelerometers (HOBO Pendant G data logger, Onset Computer Corp., Pocasset, MA), we obtained data describing standing time, standing bout frequency, and standing bout duration. Daily pen-level average standing time (6.5 h/d; SE = 0.27) did not differ between treatments. However, with greater space allowance, calves had more frequent standing bouts (22.6 vs. 20.3 bouts/d; 5.6 vs. 3.7 m²/calf; SE = 0.96) of shorter duration. To assess effects of space allowance on within-pen individual variability, we calculated the coefficient of variation for daily activity outcomes at the pen level and intra-class correlation coefficients for hourly standing time, by pen and day. The coefficient of variation for standing behavior outcomes decreased with increasing space allowance, and the intraclass correlation for hourly standing time increased, suggesting that increasing space allowance reduced individual variability and may promote more synchronous rest. Finally, we qualitatively assessed use of pen space using motion heat maps generated using computer vision from video recorded of each pen from 0800 to 1200 h on d 6 and 7 of each experimental period for each pen. These images suggest that calves preferentially used space near the perimeter of the pen, but space was used more uniformly when space allowance is restricted. Overall, these results suggest that lower space allowances may restrict patterns of activity at the pen level and reduce behavioral synchrony.</p></div>","PeriodicalId":94061,"journal":{"name":"JDS communications","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2024-09-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.sciencedirect.com/science/article/pii/S2666910224000334/pdfft?md5=25f982521d1991777a79b63aef0bfd79&pid=1-s2.0-S2666910224000334-main.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140088906","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Measurement of cow comfort during milking on different cluster removal settings through the use of leg-mounted accelerometers","authors":"","doi":"10.3168/jdsc.2023-0477","DOIUrl":"10.3168/jdsc.2023-0477","url":null,"abstract":"<div><p>Increasing levels of data are routinely collected on modern dairy farms. These include multiple variables measured by milking machine sensors and software and cow-attached sensor data, used predominantly for fertility and health monitoring. Following milking efficiency principles, including milking gently, quickly, and completely, there is utility in investigating how various milking machine settings affect gentleness of milking through a proxy measurement of cow comfort during milking. The use of leg-mounted accelerometers was investigated as a noninvasive labor-efficient means of estimating cow comfort on different automatic cluster remover (ACR) milk flow-rate switch-point settings. Accelerometer step count measurements during milking were collected from 37 cows divided into 2 groups allocated to either an ACR milk flow-rate switch-point setting of 0.2 kg/min or 0.8 kg/min for a 2-wk period and then crossed over to the other setting. Significantly more rear leg stepping occurred during daily milking (combined step count during a.m. and p.m. milkings) where the ACR activated at 0.2 kg/min (11.7 steps) compared with 0.8 kg/min (10.1 steps). Shorter milking interval between a.m. and p.m. milkings resulted in lower udder fill and reduced milk flow-rate. Under these lower udder fill conditions, rear leg movement, as an indicator of cow comfort, reduced when milk flow-rate switch-point for cluster removal increased from 0.2 kg/min (5.75 steps) to 0.8 kg/min (4.96 steps). There was no significant difference between stepping rates on both cluster removal settings during a.m. milkings. Similarly, no significant differences were noted in assessed postmilking teat condition, which was conducted after a.m. milking. The 0.2 kg/min setting extended total daily milking time by 70 s, resulting in lower mean flow-rates while producing similar milk yield. Higher vacuum levels at the teat-end were also recorded on this milking setting. This provides further incentive to consider cluster removal settings above 0.2 kg/min.</p></div>","PeriodicalId":94061,"journal":{"name":"JDS communications","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2024-09-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.sciencedirect.com/science/article/pii/S2666910224000322/pdfft?md5=b65295f8bf8a10c15f68f8b77cf18c70&pid=1-s2.0-S2666910224000322-main.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140090064","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Multiverse analysis and the Bradley-Terry model: A proposed approach for evaluating palatability and preference","authors":"","doi":"10.3168/jdsc.2023-0500","DOIUrl":"10.3168/jdsc.2023-0500","url":null,"abstract":"<div><p>The palatability of feed for dairy cows is an important consideration but is difficult to measure, particularly when considering more than 2 feeds. We outline how a combination of multiverse analysis and Bradley-Terry modeling, 2 methodological tools that have rarely been applied in dairy science, can be adapted to address this problem. Specifically, we propose to apply multiverse analysis as a way to consider a range of thresholds for how much of a mixed grass-legume (MGL) silage had to be consumed (as a percent of the total DMI) to be designated as preferred. Each threshold gives rise to a separate dataset and a corresponding fitted Bradley-Terry model. Bradley-Terry models attribute to each feed what is commonly referred to as an “ability” in the context of sports or other competitions but can be interpreted as palatability when applied to feeds. This combined approach is a way of estimating palatabilities that appropriately reflect the degree of preference cows express through their feeding behavior. It has the advantages of being transparent and relatively easy to implement. A possible disadvantage is that this method is limited to a paired comparison approach and has difficulties with main-effects statistical inference. We demonstrate the use of this methodology on an example dataset comparing MGL silages under different ensiling conditions and exposed to oxygen for different durations.</p></div>","PeriodicalId":94061,"journal":{"name":"JDS communications","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2024-09-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.sciencedirect.com/science/article/pii/S2666910224000358/pdfft?md5=9a5c4293130273abe5ba0c3b63610d19&pid=1-s2.0-S2666910224000358-main.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140088080","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Investigating the impact of 1 hour of daily outdoor access on the gait and hoof health of nonclinically lame cows housed in a movement-restricted environment","authors":"","doi":"10.3168/jdsc.2023-0498","DOIUrl":"10.3168/jdsc.2023-0498","url":null,"abstract":"<div><p>Tiestalls, known for restrictive housing, can reduce cows' locomotor skills over time. While outdoor access benefits clinically lame cows, its effect on nonclinically lame cows is less known. This study evaluated 1 h daily outdoor access on gait and hoof health of nonclinically lame Holstein cows in tiestalls. Thirty cows, blocked by parity and DIM, were assigned to exercise (1 h outdoor access 5 d/wk for 5 wk) or nonexercise groups. Visual scoring assessed 6 gait attributes and overall gait (on scales of 0–5 and 1–5, respectively) at pre-trial, post-trial, and 8-wk follow-up stages. A total of 15 cows (9 exercise, 6 nonexercise) underwent visual gait scoring, with logistical challenges and exclusion criteria leading to this selection. Hoof health for all 30 cows was evaluated during pre-trial and follow-up hoof trims, documenting claw lesions. Hoof thermography captured dorsal coronary band views in wk 1 and 5. No significant gait score changes were observed, but exercise cows showed a 1-point improvement in overall gait score and 3 gait attributes after 5 wk of outdoor access, which persisted at follow-up. Sole hemorrhages were the only claw lesions observed, and their prevalence and severity remained consistent between pre-trial and follow-up for both groups. Thermography showed consistent coronary band temperature metrics across groups and over time. In conclusion, brief outdoor sessions resulted in noticeable, albeit not statistically significant, improvements in the gait of nonclinically lame cows in restrictive housing settings without adverse hoof health effects. Further studies should evaluate different outdoor access benefits and use precise gait and hoof health analysis technologies for a more accurate detection of subtle changes.</p></div>","PeriodicalId":94061,"journal":{"name":"JDS communications","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2024-09-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.sciencedirect.com/science/article/pii/S2666910224000437/pdfft?md5=c3083514eaafacfc1be195686d3c9dd9&pid=1-s2.0-S2666910224000437-main.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142128961","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Identifying and predicting heat stress events for grazing dairy cows using rumen temperature boluses","authors":"","doi":"10.3168/jdsc.2023-0482","DOIUrl":"10.3168/jdsc.2023-0482","url":null,"abstract":"<div><p>Heat stress events in dairy cows are associated with behavioral and physiological changes such as seeking shade, increased respiration rate and body temperature, reduced milk production, and psychological distress. Knowledge of the relationship between weather and animal responses to heat stress enables automated alerts using forecast weather, aiding early provision of shade or other mitigation practices. While numerous heat stress indices for cattle have been developed, these have limitations for cows exposed to wind and solar radiation (i.e., predominantly grazing outdoors or managed on pasture). To develop a predictive model for heat stress events in pasture-based dairy systems, rumen temperature data from smaXtec (smaXtec animal care GmbH, Graz, Austria) rumen boluses in 443 cows on 3 dairy farms in Northland, New Zealand, were used to identify heat stress events and these were matched with automated weather station data collected on or near the farm. Heat stress rate (HSR) was defined as the percentage of cows within an age-breed group having a rumen temperature greater than 3 standard deviations above an individual cow's mean and heat stress events were defined as HSR &gt;25%. Single and multiple linear regression models, including published heat stress indices, were generally able to predict a high proportion of heat stress events (sensitivity 34%–68%), but were insufficiently discriminating, predicting also a high number of false positives (precision only 9%–27%). A machine learning algorithm, cubist, was the best performing model, predicting 79% of heat stress events with a precision of 52% for this dataset. Our proof-of-concept study demonstrates the potential of this approach, using climate data to predict and forecast heat stress events in pasture-based dairy systems. Further work should test the cubist model using independent data, refine dataset construction, investigate the value of including known animal variables such as cow age or breed, and incorporate other measures of heat stress such as respiration rate.</p></div>","PeriodicalId":94061,"journal":{"name":"JDS communications","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2024-09-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.sciencedirect.com/science/article/pii/S2666910224000073/pdfft?md5=2618302471d18a176108c7af85cd3aa9&pid=1-s2.0-S2666910224000073-main.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"139538965","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Impacts of heat stress on the accuracy of a noseband sensor for detection of eating and rumination behavior in confined cattle","authors":"","doi":"10.3168/jdsc.2023-0524","DOIUrl":"10.3168/jdsc.2023-0524","url":null,"abstract":"<div><p>Precision monitoring of feeding behaviors can aid in dairy herd management. Noseband sensors (RumiWatch System [RW]; Itin + Hoch GmbH) have been established as an automated gold standard for evaluating precision technologies in grazing cows, but more advanced algorithms have not been validated in confinement settings. Additionally, little is known regarding effects of environmental conditions on sensor performance. Therefore, accuracy of RW in quantifying eating and rumination time in confinement was evaluated using 2 versions of the analysis software algorithms (RW Converter V.7.3.2 and V.7.3.36) under thermoneutral (TN; 21.0°C, 64.0% relative humidity [RH], temperature-humidity index [THI] = 67) and heat stress conditions (HS; cyclical daily temperatures to mimic diurnal patterns; 0700–1900 h: 33.6°C, 40.0% RH, THI = 83.5; 1900–0700 h: 23.2°C, 70.0% RH; THI = 70.3). Nine individually housed Holstein × Simmental cross steers were fitted with RW noseband sensors. Agreement for eating time reported by RW and visual observations (1-min scan sampling) was very high in TN regardless of software version (concordance correlation coefficient [CCC]: V.7.3.2 = 0.91; V.7.3.36 = 0.94), and remained high to very high (CCC: V.7.3.2 = 0.89; V.7.3.36 = 0.95) during HS. Agreement for rumination time was very high regardless of software version in both TN (CCC: V.7.3.2 = 0.93; V.7.3.36 = 0.99) and HS (CCC: V.7.3.2 = 0.91; V.7.3.36 = 0.99). Overall, RW accurately quantified eating and ruminating time in confined cattle, and noseband sensors retained accuracy during heat stress. These results indicate RW may serve as a benchmark for future precision technology validations in dairy cattle managed in confinement systems.</p></div>","PeriodicalId":94061,"journal":{"name":"JDS communications","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2024-07-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.sciencedirect.com/science/article/pii/S2666910224000413/pdfft?md5=bd817260e00a61e2a77e9d6ed06dea90&pid=1-s2.0-S2666910224000413-main.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140090025","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Changes in skin temperature and behaviors of preweaning Holstein calves in a hot environment monitored by a multimodal tail-attached device","authors":"","doi":"10.3168/jdsc.2023-0515","DOIUrl":"10.3168/jdsc.2023-0515","url":null,"abstract":"<div><p>This study aimed to determine the applicability of a tail-attached device in monitoring animal-based indicators (ABI) associated with changes in environmental conditions in calves through investigating the relationship between sensor-derived ABI and the temperature-humidity index (THI). Furthermore, to identify effective ABI indicative of heat stress status, sensor-derived ABI of calves under differing heat stress levels based on rectal temperature (RT) were compared. The tail-attached device, which is capable of measuring skin temperature (ST), activity intensity, and roll angle along the longitudinal axis of the tail at 3-min intervals, was attached to 99 preweaning female Holstein calves for an average of 4 wk (26.4 ± 6.8 d). After selecting data from mild to hot days (daily average THI of ≥55), physiological (daily maximum tail ST) and behavioral (daily average activity intensity, daily total lying time, and daily total body position change) ABI were computed, and their relationship with the daily average THI was determined using piecewise regression analysis. Additionally, during the hot season, RT of 20 randomly selected tested calves were measured thrice a week (every 2.4 ± 0.5 d), and a comparison was conducted between the ABI of calves with normal RT (&lt;39.5°C) and those with high RT (≥39.5°C), utilizing data from days characterized by potential heat stress (daily average THI of ≥75). During the study, ambient temperature (°C) and relative humidity (%) were recorded every 10 min using an automatic digital data logger, from which the daily average THI was calculated. Piecewise regression analysis identified THI breakpoints of 73.6 for tail ST, 79.1 for average activity intensity, 72.3 for lying time, and 79.1 for position change. All the tested ABI tended to increase as THI increased, and this trend was pronounced in tail ST, activity intensity, and position change after the breakpoint. These 3 ABI were higher in calves with high RT compared with those with normal RT, whereas lying time shared similar values between the RT groups. Overall, these findings suggest that the tail-attached device can simultaneously monitor both physiological and behavioral ABI in calves, and among the ABI, tail ST, activity intensity, and position change are the effective ABI indicative of heat stress status.</p></div>","PeriodicalId":94061,"journal":{"name":"JDS communications","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2024-07-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.sciencedirect.com/science/article/pii/S2666910224000395/pdfft?md5=b8ec6b47d4f10f6ce9010acd786c984f&pid=1-s2.0-S2666910224000395-main.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140091473","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Reducing butter firmness with chemically esterified butter oil","authors":"Talia Katz, S. Ginsburg, R. Jiménez-Flores","doi":"10.3168/jdsc.2024-0597","DOIUrl":"https://doi.org/10.3168/jdsc.2024-0597","url":null,"abstract":"","PeriodicalId":94061,"journal":{"name":"JDS communications","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2024-07-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141846907","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Feed preference in lactating dairy cows for different pellet formulations","authors":"","doi":"10.3168/jdsc.2023-0517","DOIUrl":"10.3168/jdsc.2023-0517","url":null,"abstract":"<div><p>Two taste preference experiments were conducted with the same 8 multiparous lactating Jersey cattle (100 ± 7.1 DIM, 30.5 ± 4 0.06 kg of milk yield, 18.8 ± 2.52 kg of DMI in experiment 1; and 215 ± 7.1 DIM, 27.6 ± 3.98 kg of milk yield, 19.6 ± 3.03 kg of DMI in experiment 2). In experiment 1, 4 pellets were formulated and manufactured into 4.0-mm pellets. These were as follows: 45.7% alfalfa meal, 45.7% corn grain, and 8.57% wheat middlings (ALFC); 72.3% corn grain, 18.5% wheat middlings, and 9.25% dried distillers grains and solubles (ENG); a pellet containing 100% dehydrated alfalfa meal (DALF); and a pellet containing a mixture of concentrate ingredients (GMIX; 43.1% corn grain, 26.3% dried distillers grains and solubles, 13.8% wheat middlings, 7.10% dry molasses, 3.18% soybean meal, 0.93% corn oil, and 5.6% minor constituents). Cows were offered 0.50 kg of pellets in a randomized arrangement within the feed bunk. Feed preference was ranked from 1 to 4 with 1 being the most preferred and 4 the least. The resulting preference rankings were averaged (± SE) resulting in a highest (closest to 1) to lowest (furthest from 1) ranking as follows of ALFC (1.38 ± 0.164), ENG (2.13 ± 0.327), GMIX (2.88 ± 0.375), and DALF (3.13 ± 0.350). The probabilities of first choice were 70.6 ± 0.55% ALFC, 16.5 ± 0.46% ENG, 5.50 ± 0.475% DALF, and 7.48 ± 0.455% GMIX. A <em>Z</em>-test was conducted to determine the percentage a treatment would be chosen first differed from the value of no preference at 25%; ALFC and DALF differed from the mean value, whereas no difference was observed for ENG and GMIX. The most preferred pellet (ALFC) was used in a second study and compared against 3 other treatments in which different flavoring agents were added. In this study, 4 pellets were manufactured with ALFC: 45.7% alfalfa meal, 45.7% corn grain, 6.76% wheat middlings, and 1.81% oregano leaf (ALFCO); 45.7% alfalfa meal, 45.7% corn grain, 8.22% wheat middlings, 0.10% melon flavoring, and 0.25% BitterOff (ALFCM); and 45.7% alfalfa meal, 45.7% corn grain, 8.47% wheat middlings, and 0.10% licorice flavoring (ALFCL). The resulting preference rankings were averaged resulting in a highest to lowest ranking as follows: ALFC (1.25 ± 0.164), ALFCO (2.38 ± 0.263), ALFCM (2.63 ± 0.375), and ALFCL (3.25 ± 0.164). The probabilities of first choice were 81.9 ± 0.65% ALFC, 8.49 ± 0.46% ALFCO, 6.50 ± 0.481% ALFCM, and 3.12 ± 0.491% ALFCL. Of the pellet choices, ALFC and ALFCL differed from the mean value of no choice, whereas no difference was observed for ALFCO and ALFCM. Mixtures of corn grain and dehydrated alfalfa meal bound by wheat middlings may serve as a feeding strategy that is preferred by the animals and may be an effective reward to cows entering an automated milk system, and we were unable to improve preference by adding flavoring agents.</p></div>","PeriodicalId":94061,"journal":{"name":"JDS communications","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2024-07-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.sciencedirect.com/science/article/pii/S2666910224000292/pdfft?md5=17fc850762d3c663bed9fee7582bf9ec&pid=1-s2.0-S2666910224000292-main.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140465133","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Re-sequencing of the casein genes in Swedish Red cattle giving milk with diverse protein profiles and extreme rennet coagulation properties","authors":"","doi":"10.3168/jdsc.2023-0412","DOIUrl":"10.3168/jdsc.2023-0412","url":null,"abstract":"<div><p>Impaired rennet coagulation properties in milk could lead to prolonged processing times and production losses. Heritability for milk coagulation has previously been estimated to be 0.28 to 0.45, indicating that genetic selection can be used to manipulate this trait. The CN proteins are expressed by the genes <em>CSN1S1, CSN2, CSN1S2</em>, and <em>CSN3</em> and are located on bovine chromosome 6. To better understand the effect of genetic variation in the CN genes on milk coagulation, blood and milk samples from 30 Swedish Red Dairy Cattle (RDC) with divergent coagulation properties were investigated. DNA from the 30 cows was sequenced for the CN genes to determine the theoretical AA sequence and to look for genetic variation in the untranslated regions. The aim is to confirm the protein genetic variants previously reported, while searching for additional genetic variation in the CN genes of 30 RDC. We observed genetic variation in 116 SNPs in the known CN genes where 10% of the SNPs are exon variants and the remaining 90% are intron variants. A total of 2.5% of the SNPs are found in the 5′- or 3′-untranslated region (UTR) regions of the exons; 2% are synonymous variants and 6% are missense variants that concurred with the known protein variants for <em>CSN1S1, CSN2</em>, and <em>CSN3</em>. Furthermore, 6% of the SNPs are splice polypyrimidine tract intron variants. The 2 genetic variants in the 5′- and 3′-UTR in <em>CSN1S1</em> and <em>CSN3</em> are found with protein variants <em>CSN1S1C</em> and <em>CSN3B</em>. Because both UTR variants are associated with gain and loss of micro RNA and transcription factors, this could explain differences in expression of the genetic protein variants. Preliminary chi-squared analysis and comparison with previous GWAS studies showed potential connections between the identified SNPs and coagulation properties of milk. By advancing the knowledge of the connection between the DNA sequence and the functional properties of the CN proteins, we hope to learn more about the cheese coagulation properties of milk from RDC.</p></div>","PeriodicalId":94061,"journal":{"name":"JDS communications","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2024-07-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.sciencedirect.com/science/article/pii/S2666910224000267/pdfft?md5=ff57d97b1008b3477a97c2e6185e3cd8&pid=1-s2.0-S2666910224000267-main.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140463590","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}