BMC Plant Biology最新文献

{"title":"Integrated stress responses in okra plants (cv. ''Meya']: unravelling the mechanisms underlying drought and nematode co-occurrence.","authors":"Uchenna Egedigwe, Obi Udengwu, Chima Ekeleme-Egedigwe, Chima Maduakor, Clifford Urama, Chidera Odo, Eugene Ojua","doi":"10.1186/s12870-024-05686-1","DOIUrl":"10.1186/s12870-024-05686-1","url":null,"abstract":"<p><strong>Background: </strong>Climate change threatens sub-Saharan Africa's agricultural production, causing abiotic and biotic stressors. The study of plant responses to joint stressors is crucial for understanding molecular processes and identifying resilient crops for global food security. This study aimed to explore the shared and tailored responses of okra plants (cv. ''Meya'), at the biochemical and molecular levels, subjected to combined stresses of drought and Meloidogyne incognita infection.</p><p><strong>Design: </strong>The study involved 240 okra plants in a completely randomized design, with six treatments replicated 20 times. Okra plants were adequately irrigated at the end of every 10-days water deficit that lasted for 66 days (D). Also, the plants were infected with M. incognita for 66 days and irrigated at 2-days intervals (R). The stresses were done independently, in sequential combination (D before R and R before D) and concurrently (R and D). All biochemical and antioxidant enzyme assays were carried out following standard procedures.</p><p><strong>Results: </strong>Significant reductions in leaf relative water content were recorded in all stressed plants, especially in leaves of plants under individual drought stress (D) (41.6%) and plants stressed with root-knot nematode infection before drought stress (RBD) (41.4%). Malondialdehyde contents in leaf tissues from plants in D, nematode-only stress (RKN), drought stress before root-knot nematode infection (DBR), RBD, and concurrent drought-nematode stress (RAD) significantly increased by 320.2%, 152.9%, 186.5%, 283.7%, and 109.6%, respectively. Plants in D exhibited the highest superoxide dismutase activities in leaf (147.1% increase) and root (105.8% increase) tissues. Catalase (CAT) activities were significantly increased only in leaves of plants in D (90.8%) and RBD (88.9%), while only roots of plants in D exhibited a substantially higher CAT activity (139.3% increase) in comparison to controlled plants. Okra plants over-expressed NCED3 and under-expressed Me3 genes in leaf tissues. The NCED3 gene was overexpressed in roots from all treatments, while CYP707A3 was under-expressed only in roots of plants in RBD and RKN. CYP707A3 and NCED3 were grouped as closely related genes, while members of the Me3 genes were clustered into a separate group.</p><p><strong>Conclusion: </strong>The biochemical and molecular responses observed in okra plants (cv. ''Meya') subjected to combined stresses of drought and Meloidogyne incognita infection provide valuable insights into enhancing crop resilience under multifaceted stress conditions, particularly relevant for agricultural practices in sub-Saharan Africa facing increasing climatic challenges.</p>","PeriodicalId":9198,"journal":{"name":"BMC Plant Biology","volume":null,"pages":null},"PeriodicalIF":4.3,"publicationDate":"2024-10-19","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11490165/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142458301","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Improved chickpea growth, physiology, nutrient assimilation and rhizoremediation of hydrocarbons by bacterial consortia.","authors":"Muhammad Hayder Ali, Muhammad Imran Khan, Fiza Amjad, Naeem Khan, Mahmoud F Seleiman","doi":"10.1186/s12870-024-05709-x","DOIUrl":"https://doi.org/10.1186/s12870-024-05709-x","url":null,"abstract":"<p><strong>Background: </strong>Soil pollution by petroleum hydrocarbons (PHCs) reduces yield by changing the physico-chemical properties of soil and plants due to PHCs' biotoxicity and persistence. Thus, removing PHCs from the soil is crucial for ecological sustainability. Microbes-assisted phytoremediation is an economical and eco-friendly solution. The current work aimed to develop and use bacterial consortia (BC) for PHCs degradation and plant growth enhancement in hydrocarbon-contaminated soil. Initially, the enriched microbial cultures (that were prepared from PHCs-contaminated soils from five distinct regions) were obtained via screening through microcosm experiments. Afterward, two best microbial cultures were tested for PHCs degradation under various temperature and pH ranges. After culture optimization, isolation and characterization of bacterial strains were done to construct two BC. These constructed BC were tested in a pot experiment for hydrocarbons degradation and chickpea growth in PHCs contaminated soil.</p><p><strong>Results: </strong>Findings revealed that PHCs exerted significant phytotoxic effects on chickpea growth and physiology when cultivated in PHCs contaminated soil, reducing agronomic and physiological traits by 13-29% and 12-43%, respectively. However, in the presence of BC, the phytotoxic impacts of PHCs on chickpea plants were reduced, resulting in up to 24 - 35% improvement in agronomic and physiological characteristics as compared to un-inoculated contaminated controls. Furthermore, the bacterial consortia boosted chickpea's nutritional absorption and antioxidant mechanism. Most importantly, chickpea plants phytoremediated 52% of the initial PHCs concentration; however, adding BC1 and BC2 with chickpea plants further increased this removal and remediated 74% and 80% of the initial PHCs concentration, respectively.</p><p><strong>Conclusion: </strong>In general, BC2 outperformed BC1 (with few exceptions) in promoting plant growth and PHCs elimination. Therefore, using multi-trait BC for PHCs degradation and plant growth improvement under PHCs stress may be an efficient and environmentally friendly strategy to deal with PHCs pollution and toxicity.</p>","PeriodicalId":9198,"journal":{"name":"BMC Plant Biology","volume":null,"pages":null},"PeriodicalIF":4.3,"publicationDate":"2024-10-19","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11490054/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142458290","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Ameliorating arsenic and PVC microplastic stress in barley (Hordeum vulgare L.) using copper oxide nanoparticles: an environmental bioremediation approach.","authors":"Haifa Abdulaziz Sakit Alhaithloul, Suliman Mohammed Suliman Alghanem, Ibtisam Mohammed Alsudays, Zahid Khorshid Abbas, Siham M Al-Balawi, Baber Ali, Tabarak Malik, Sadia Javed, Shafaqat Ali, Sezai Ercisli, Doaa Bahaa Eldin Darwish","doi":"10.1186/s12870-024-05661-w","DOIUrl":"https://doi.org/10.1186/s12870-024-05661-w","url":null,"abstract":"<p><p>The present study investigates the impact of varying concentrations of PVC microplastics (PVC-MPs) - specifically 0 (no PVC-MPs), 2, and 4 mg L^- 1 -alongside different arsenic (As) levels of 0 (no As), 150, and 300 mg kg^- 1 in the soil, with the concurrent application of copper oxide-nanoparticles (CuO-NPs) at 0 (no CuO -NPs), 25 and 50 µg mL^- 1 to barley (Hordeum vulgare L.) plants. This research primarily aims to assess plant growth and biomass, photosynthetic pigments and gas exchange characteristics, oxidative stress indicators, as well as the response of various antioxidants (both enzymatic and non-enzymatic) and their relevant genes expression, proline metabolism, the AsA-GSH cycle, and cellular fractionation within the plants. The findings showed that increased levels of PVC-MPs and As stress in the soil significantly reduced plant growth and biomass, photosynthetic pigments, and gas exchange characteristics. Additionally, PVC-MPs and As stress increased oxidative stress in the roots and shoots, as evidenced by elevated levels of malondialdehyde (MDA), hydrogen peroxide (H₂O₂), and electrolyte leakage (EL), which in turn stimulated the production of various enzymatic and non-enzymatic antioxidants, gene expression, and sugar content. Furthermore, a notable increase in proline metabolism, the AsA-GSH cycle, and cellular pigmentation was observed. Conversely, the application of CuO-NPs resulted in a substantial improvement in plant growth and biomass, gas exchange characteristics, and the activity of enzymatic and non-enzymatic antioxidants, along with a reduction in oxidative stress. Additionally, CuO-NPs enhanced cellular fractionation while decreasing proline metabolism and the AsA-GSH cycle in H. vulgare plants. These outcomes provide new insights into sustainable agricultural practices and offer significant potential in addressing the critical challenges of heavy metal contamination in agricultural soils.</p>","PeriodicalId":9198,"journal":{"name":"BMC Plant Biology","volume":null,"pages":null},"PeriodicalIF":4.3,"publicationDate":"2024-10-19","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11490012/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142458254","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Comprehensive analysis of PLATZ family genes and their responses to abiotic stresses in Barley.","authors":"Xue Feng, Gehao Zhu, Quan Meng, Jianbin Zeng, Xiaoyan He, Wenxing Liu","doi":"10.1186/s12870-024-05690-5","DOIUrl":"https://doi.org/10.1186/s12870-024-05690-5","url":null,"abstract":"<p><strong>Background: </strong>Plant A/T-rich protein and zinc-binding protein (PLATZ) transcription factors are pivotal regulators in various aspects of plant biology, including growth, development, and responses to environmental stresses. While PLATZ genes have been extensively studied and functionally characterized in various plants, limited information is available for these genes in barley.</p><p><strong>Results: </strong>Here, we discovered a total of 11 PLATZ genes distributed across seven chromosomes in barley. Based on phylogenetic and conserved motif analysis, we classified PLATZ into five subfamilies, comprising 3, 1, 2, 1 and 4 genes, respectively. Analysis of gene structure demonstrated that these 11 HvPLATZ genes typically possessed two to four exons. Most HvPLATZ genes were found to possess at least one ABRE cis-element in their promoter regions, and a few of them also contained LTR, CAT-box, MRE, and DRE cis-elements. Then, we conducted an exploration of the expression patterns of HvPLATZs, which displayed notable differences across various tissues and in response to abiotic stresses. Functional analysis of HvPLATZ6 and HvPLATZ8 in yeast cells showed that they may be involved in drought tolerance. Additionally, we constructed a regulatory network including miRNA-targeted gene predictions and identified two miRNAs targeting two HvPLATZs, such as hvu-miR5053 and hvu-miR6184 targeting HvPLATZ2, hvu-miR6184 targeting HvPLATZ10.</p><p><strong>Conclusion: </strong>In summary, these findings provide valuable insights for future functional verification of HvPLATZs and contribute to a deeper understanding of the role of HvPLATZs in response to stress conditions in barley.</p>","PeriodicalId":9198,"journal":{"name":"BMC Plant Biology","volume":null,"pages":null},"PeriodicalIF":4.3,"publicationDate":"2024-10-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11488246/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142458269","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Chili cultivars vulnerability: a multi-factorial examination of disease and pest-induced yield decline across different growing microclimates and watering regimens.","authors":"Farhan Ahmad, Kusumiyati Kusumiyati, Mochamad Arief Soleh, Muhammad Rabnawaz Khan, Ristina Siti Sundari","doi":"10.1186/s12870-024-05541-3","DOIUrl":"https://doi.org/10.1186/s12870-024-05541-3","url":null,"abstract":"<p><strong>Background: </strong>As identified by the research, it is imperative to develop effective ways to address the pressing problem of disease and pest susceptibility in chili agriculture and secure sustainable crop yield. The research examines the impact of various growing microclimates, watering regimens, and chili cultivars on disease incidence, pest attacks, and yield loss.</p><p><strong>Results: </strong>The study, which took place over a season, used a randomized complete block design to evaluate how well Tanjung, Unpad, and Osaka cultivars performed in four different watering regimens (100, 75, 50, and 25% ETc) and different microclimates (greenhouse, rain shelter, screen house, and open field). The findings exhibited that watering regimens and microclimates greatly influenced disease and pest occurrence, but cultivars had a minimal effect on these variables. Disease and pest attack rates were highest in the open field and lowest in the screen house. A correlation was found between lower disease and pest incidence and optimal irrigation levels (75% and 100% ETc). At lower watering regimens of 25% ETc and in the open field, yield loss was the greatest.</p><p><strong>Conclusion: </strong>The results emphasize how crucial controlled environments and appropriate irrigation techniques are to reducing crop loss and increasing production. Enhancing watering regimens and implementing screen house cultivation are two strategies for improving the productivity and sustainability of chili output.</p>","PeriodicalId":9198,"journal":{"name":"BMC Plant Biology","volume":null,"pages":null},"PeriodicalIF":4.3,"publicationDate":"2024-10-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11488149/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142458256","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Does time matter? Intraspecific diversity of ribosomal RNA genes in lineages of the allopolyploid model grass Brachypodium hybridum with different evolutionary ages.","authors":"Dana Trunova, Natalia Borowska-Zuchowska, Serhii Mykhailyk, Kai Xia, Yuanbin Zhu, Ruben Sancho, Magdalena Rojek-Jelonek, Sònia Garcia, Kai Wang, Pilar Catalan, Ales Kovarik, Robert Hasterok, Bozena Kolano","doi":"10.1186/s12870-024-05658-5","DOIUrl":"https://doi.org/10.1186/s12870-024-05658-5","url":null,"abstract":"<p><strong>Background: </strong>Polyploidisation often results in genome rearrangements that may involve changes in both the single-copy sequences and the repetitive genome fraction. In this study, we performed a comprehensive comparative analysis of repetitive DNA, with a particular focus on ribosomal DNA (rDNA), in Brachypodium hybridum (2n = 4x = 30, subgenome composition DDSS), an allotetraploid resulting from a natural cross between two diploid species that resemble the modern B. distachyon (2n = 10; DD) and B. stacei (2n = 20; SS). Taking advantage of the recurrent origin of B. hybridum, we investigated two genotypes, Bhyb26 and ABR113, differing markedly in their evolutionary age (1.4 and 0.14 Mya, respectively) and which resulted from opposite cross directions. To identify the origin of rDNA loci we employed cytogenetic and molecular methods (FISH, gCAPS and Southern hybridisation), phylogenetic and genomic approaches.</p><p><strong>Results: </strong>Unlike the general maintenance of doubled gene dosage in B. hybridum, the rRNA genes showed a remarkable tendency towards diploidisation at both locus and unit levels. While the partial elimination of 35S rDNA units occurred in the younger ABR113 lineage, unidirectional elimination of the entire locus was observed in the older Bhyb26 lineage. Additionally, a novel 5S rDNA family was amplified in Bhyb26 replacing the parental units. The 35S and 5S rDNA units were preferentially eliminated from the S- and D-subgenome, respectively. Thus, in the more ancient B. hybridum lineage, Bhyb26, 5S and 35S rRNA genes are likely expressed from different subgenomes, highlighting the complexity of polyploid regulatory networks.</p><p><strong>Conclusion: </strong>Comparative analyses between two B. hybridum lineages of distinct evolutionary ages revealed that although the recent lineage ABR113 exhibited an additive pattern of rDNA loci distribution, the ancient lineage Bhyb26 demonstrated a pronounced tendency toward diploidisation manifested by the reduction in the number of both 35S and 5S loci. In conclusion, the age of the allopolyploid appears to be a decisive factor in rDNA turnover in B. hybridum.</p>","PeriodicalId":9198,"journal":{"name":"BMC Plant Biology","volume":null,"pages":null},"PeriodicalIF":4.3,"publicationDate":"2024-10-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11488067/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142458272","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Metabolic pathways regulated by strigolactones foliar spraying enhance osmoregulation and antioxidant defense in drought-prone soybean.","authors":"Liang Cao, Siqi Zhang, Lei Feng, Binbin Qiang, Weiran Ma, Shilin Cao, Zhenping Gong, Yuxian Zhang","doi":"10.1186/s12870-024-05663-8","DOIUrl":"https://doi.org/10.1186/s12870-024-05663-8","url":null,"abstract":"<p><strong>Background: </strong>Drought stress is a significant abiotic stressor that hinders growth, development, and crop yield in soybeans. Strigolactones (SLs) positively regulate plant resistance to drought stress. However, the impact of foliar application of SLs having different concentrations on soybean growth and metabolic pathways related to osmoregulation remains unknown. Therefore, to clarify the impact of SLs on soybean root growth and cellular osmoregulation under drought stress, we initially identified optimal concentrations and assessed key leaf and root indices. Furthermore, we conducted transcriptomic and metabolic analyses to identify differential metabolites and up-regulated genes.</p><p><strong>Results: </strong>The results demonstrated that drought stress had a significant impact on soybean biomass, root length, root surface area, water content and photosynthetic parameters. However, when SLs were applied through foliar application at appropriate concentrations, the accumulation of ABA and soluble protein increased, which enhanced drought tolerance of soybean seedlings by regulating osmotic balance, protecting membrane integrity, photosynthesis and activating ROS scavenging system. This also led to an increase in soybean root length, lateral root number and root surface area. Furthermore, the effects of different concentrations of SLs on soybean leaves and roots were found to be time-sensitive. However, the application of 0.5 µM SLs had the greatest beneficial impact on soybean growth and root morphogenesis under drought stress. A total of 368 differential metabolites were screened in drought and drought plus SLs treatments. The up-regulated genes were mainly involved in nitrogen compound utilization, and the down-regulated metabolic pathways were mainly involved in maintaining cellular osmoregulation and antioxidant defenses.</p><p><strong>Conclusions: </strong>SLs enhance osmoregulation in soybean plants under drought stress by regulating key metabolic pathways including Arachidonic acid metabolism, Glycerophospholipid metabolism, Linoleic acid metabolism, and Flavone and flavonol biosynthesis. This study contributes to the theoretical understanding of improving soybean adaptability and survival in response to drought stress.</p>","PeriodicalId":9198,"journal":{"name":"BMC Plant Biology","volume":null,"pages":null},"PeriodicalIF":4.3,"publicationDate":"2024-10-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11488121/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142458302","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"The relationships between structure and function of plant communities in the desert steppe.","authors":"Shijie Lv, Zihan Wang, Baolong Yan, Hongmei Liu, Guodong Han, Zhongwu Wang, Zhiguo Li, Zhanwen Wang, Xiaohui Song, Saruul Kang","doi":"10.1186/s12870-024-05659-4","DOIUrl":"https://doi.org/10.1186/s12870-024-05659-4","url":null,"abstract":"<p><strong>Background: </strong>Assessing the relationships between spatial and temporal structures and functions of plant communities is an effective way to understand the changing dynamics of plant communities in specific environments. In this study, we investigated the response of structural and functional stabilities of plant communities to stocking rate in the desert steppe over a 16-year grazing period as the research background.</p><p><strong>Methods: </strong>We used classical statistical methods to investigate the quantitative characteristics of plant communities over time (2014-2019) and space (2017-2019) at four stocking rates (control, CK, 0 sheep·ha^-1·month^-1; light grazing, LG, 0.15 sheep·ha^-1·month^-1; moderate grazing, MG, 0.30 sheep·ha^-1·month^-1; heavy grazing, HG, 0.45 sheep·ha^-1·month^-1) in the Stipa breviflora desert steppe of Inner Mongolia. We then examined the relationship between structural and functional stability of plant communities.</p><p><strong>Results: </strong>On the spatial scale, the structural stability of plant community was the highest in the LG treatment and the lowest in the MG treatment. The functional stability of plant community was the highest in the MG treatment and the lowest in the HG treatment. On the temporal scale, the structural stability of plant community was the highest in the MG treatment and the lowest in the LG treatment. The functional stability of plant community was the highest in the LG treatment and the lowest in the HG treatment. Affected by the stocking rate, the structural stability of plant community fluctuated more widely on the spatial scale and its functional stability varied more widely on the temporal scale. Nonetheless, the functional stability of the plant community is more responsive to the stocking rate.</p><p><strong>Conclusions: </strong>Our findings suggest that influenced by the disturbance of stocking rate, the structural stability of plant community is more significant than the functional stability in the desert grassland ecosystem, which lays a solid foundation for the study of ecosystem stability.</p>","PeriodicalId":9198,"journal":{"name":"BMC Plant Biology","volume":null,"pages":null},"PeriodicalIF":4.3,"publicationDate":"2024-10-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11487793/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142458328","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Single nucleotide polymorphism (SNP) analysis reveals ancestry and genetic diversity of cultivated and wild grapevines in Croatia.","authors":"Luka Marinov, Gabriele Magris, Gabriele Di Gaspero, Michele Morgante, Edi Maletić, Marijan Bubola, Ivan Pejić, Goran Zdunić","doi":"10.1186/s12870-024-05675-4","DOIUrl":"https://doi.org/10.1186/s12870-024-05675-4","url":null,"abstract":"<p><strong>Background: </strong>Croatia is a geographically small country with a remarkable diversity of cultivated and spontaneous grapevines. Local germplasm has been characterised by microsatellite markers, but a detailed analysis based on single nucleotide polymorphisms (SNPs) is still lacking. Here we characterize the genetic diversity of 149 accessions from three germplasm repositories and four natural sites using 516,101 SNPs to identify complete parent-offspring trios and their relations with spontaneous populations, offering a proof-of-concept for the use of reduced-representation genome sequencing in population genetics and genome-wide association studies (GWAS).</p><p><strong>Results: </strong>Principal component analysis revealed a clear discontinuity between cultivated (V. vinifera subsp. sativa) and spontaneous grapevines, supporting the notion that the latter represent local populations of the wild progenitor (V. vinifera subsp. sylvestris). ADMIXTURE identified three ancestry components. Two sativa components are alternatively predominant in cultivars grown either in northern Adriatic Croatia and Continental Croatia or in Dalmatia (i.e. central and southern Adriatic Croatia). A sylvestris component, which is predominant in accessions from spontaneous populations, is a minor ancestry component in cultivated accessions. TREEMIX provided evidence of unidirectional migration from the vineyards to natural sites, suggesting that gene flow has gone preferentially from the introduced domesticated germplasm into local wild populations rather than vice versa. Identity-by-descent analysis indicated an extensive kinship network, including 14 complete parent-offspring trios, involving only cultivated accessions, six full-sibling relationships and invalidated a presumed pedigree of one of the most important varieties in Croatia, 'Plavac Mali'. Despite this strong population structure, significant association was found between 143 SNPs and berry skin colour and between 2 SNPs and leaf hairiness, across two previously known genomic regions.</p><p><strong>Conclusions: </strong>The clear genetic separation between Croatian cultivars and sylvestris ruled out the hypothesis that those cultivars originated from local domestication events. On the other hand, the evidence of a crop-to-wild gene flow signals the need for an urgent adoption of conservation strategies that preserve the residual genetic integrity of wild relatives. The use of this reduced-representation genome sequencing protocol in grapevine enables an accurate pedigree reconstruction and can be recommended for GWAS experiments.</p>","PeriodicalId":9198,"journal":{"name":"BMC Plant Biology","volume":null,"pages":null},"PeriodicalIF":4.3,"publicationDate":"2024-10-17","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11483961/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142458309","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"The effect of foliar spraying of some micronutrients and lanthanum on the morphological and physiological characteristics of summer savory (Satureja hortensis L.) under hydroponic and soil conditions.","authors":"Hossein Salehi-Arjmand, Ali Khadivi, Vahid Bagheri","doi":"10.1186/s12870-024-05696-z","DOIUrl":"https://doi.org/10.1186/s12870-024-05696-z","url":null,"abstract":"<p><strong>Background: </strong>The use of lanthanum (La) as a rare element has increased in agriculture. Summer savory (Satureja hortensis L.) is an herbaceous and medicinal plant that has received attention recently. The present study aimed to investigate the effects of foliar application of zinc (Zn), copper (Cu), manganese (Mn), and La at different growth stages, including vegetative, reproductive, and vegetative to harvest on morphological and physiological traits of S. hortensis under hydroponic and soil conditions in the greenhouse. The study was arranged in a factorial experiment based on a completely randomized design (CRD) with three replications.</p><p><strong>Results: </strong>Results of hydroponic condition showed that foliar application of Cu, Zn, and Mn were the most effective treatments to improve the measured morphological and physiological traits. Moreover, La was not more appropriate in increasing the quantitative and qualitative characteristics. Also, results showed that in soil cultivation, foliar application of micronutrient elements increased the ratio of leaf-to-stems, antioxidant compounds, and the percentage of essential oils, while the application of Mn, Cu, Zn, and La did not have positive effects on the increase in vegetative characteristics in all three stages of foliar application compared with the control treatment.</p><p><strong>Conclusions: </strong>Cu, Zn, and Mn in appropriate concentrations can increase growth and physiological characteristics of summer savory in hydroponic systems.</p>","PeriodicalId":9198,"journal":{"name":"BMC Plant Biology","volume":null,"pages":null},"PeriodicalIF":4.3,"publicationDate":"2024-10-17","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11484322/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142458326","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}