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Baseline tebuconazole sensitivity and potential resistant risk in Fusarium Graminearum. 戊唑醇基线敏感性和禾谷镰刀菌的潜在抗药性风险。
IF 4.3 2区 生物学
BMC Plant Biology Pub Date : 2024-08-21 DOI: 10.1186/s12870-024-05206-1
Feng Zhou, Xiaoli Zhou, Yan Jiao, Aohui Han, Huanhuan Zhou, Zeyuan Chen, Weiguo Li, Runqiang Liu
{"title":"Baseline tebuconazole sensitivity and potential resistant risk in Fusarium Graminearum.","authors":"Feng Zhou, Xiaoli Zhou, Yan Jiao, Aohui Han, Huanhuan Zhou, Zeyuan Chen, Weiguo Li, Runqiang Liu","doi":"10.1186/s12870-024-05206-1","DOIUrl":"10.1186/s12870-024-05206-1","url":null,"abstract":"<p><strong>Background: </strong>The Fusarium head blight caused by Fusarium graminearum results in reduced crop yields and the potential for vomitoxin contamination, which poses a risk to both human and livestock health. The primary method of control relies on the application of chemical fungicides.</p><p><strong>Results: </strong>The current study found that the tebuconazole sensitivity of 165 F. graminearum isolates collected from the Huang-Huai-Hai region of China between 2019 and 2023 ranged from 0.005 to 2.029 µg/mL, with an average EC<sub>50</sub> value of 0.33 ± 0.03 µg/mL. The frequency distribution conformed to a unimodal curve around the mean, and therefore provides a useful reference for monitoring the emergence of tebuconazole resistance in field populations of F. graminearum. No cross-resistance was detected between tebuconazole and other unrelated fungicides such as flutriafol, propiconazole and fluazinam, but there was a clear negative cross-resistance with triazole fungicides including fludioxonil, epoxiconazole, hexaconazole, and metconazole. Analysis of five tebuconazole-resistant mutants produced under laboratory conditions indicated that although the mycelial growth of the mutants were significantly (p < 0.05) reduced, spore production and germination rates could be significantly (p < 0.05) increased. However, pathogenicity tests confirmed a severe fitness cost associated with tebuconazole resistance, as all of the mutants completely loss the ability to infect host tissue. Furthermore, in general the resistant mutants were found to have increased sensitivity to abiotic stress, such as ionic and osmotic stress, though not to Congo red and oxidative stress, to which they were more tolerant. Meanwhile, molecular analysis identified several point mutations in the CYP51 genes of the mutants, which resulted in two substitutions (I281T, and T314A) in the predicted sequence of the FgCYP51A subunit, as well as seven (S195F, Q332V, V333L, L334G, M399T, E507G, and E267G) in the FgCYP51C subunit. In addition, it was also noted that the expression of the CYP51 genes in one of the mutants, which lacked point mutations, was significantly up-regulated in response to tebuconazole treatment.</p><p><strong>Conclusions: </strong>These results provide useful data that allow for more rational use of tebuconazole in the control of F. graminearum, as well as for more effective monitoring of fungicide resistance in the field.</p>","PeriodicalId":9198,"journal":{"name":"BMC Plant Biology","volume":null,"pages":null},"PeriodicalIF":4.3,"publicationDate":"2024-08-21","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11337888/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142008284","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Evaluation of effectiveness resistance genes in wheat genotypes using marker-assisted selection for stripe rust resistance breeding". 利用标记辅助选择技术进行抗条锈病育种,评估小麦基因型的有效性"。
IF 4.3 2区 生物学
BMC Plant Biology Pub Date : 2024-08-20 DOI: 10.1186/s12870-024-05470-1
Atef A Shahin, Reda I Omara, Hend A Omar, Heba Saad El-Din, Mohamed D Sehsah, Tarek Essa, Marwa A Zayton, Hanaa S Omar
{"title":"Evaluation of effectiveness resistance genes in wheat genotypes using marker-assisted selection for stripe rust resistance breeding\".","authors":"Atef A Shahin, Reda I Omara, Hend A Omar, Heba Saad El-Din, Mohamed D Sehsah, Tarek Essa, Marwa A Zayton, Hanaa S Omar","doi":"10.1186/s12870-024-05470-1","DOIUrl":"10.1186/s12870-024-05470-1","url":null,"abstract":"<p><p>Stripe rust, induced by Puccinia striiformis f. sp. tritici, is the most harmful and prevalent disease in temperate regions worldwide, affecting wheat production areas globally. An effective strategy for controlling the disease involves enhancing genetic resistance against stripe rust, achieved through Egyptian breeding efforts not previously conducted on wheat genotypes. The resistance level to stripe rust in thirty-eight wheat genotypes was assessed using marker-assisted selection methods. The investigation suggests that wheat breeding programs can utilize slow-rusting Yr genes, which are effective resistance genes, to develop novel genotypes with stripe rust resistance through marker-assisted breeding. Based on the four disease responses of the wheat genotypes under investigation, the results categorized the genotypes into three groups. The first group included resistant genotypes, the second group exhibited a slow-rusting character with the lowest disease symptom rates, and the last group displayed the highest disease characteristics rates throughout the three seasons, comprising fast-rusting genotypes. The rust-resistant genes identified were Yr5, Yr9, Yr10, Yr15, Yr17, Yr18, Yr26, Yr29, Yr30, and Yr36. Genes Yr26, Yr30, and Yr36 were present in all genotypes. Genotypes Misr3, Misr4, Giza168, Giza167, Giza170, Giza171, Gemmeiza9, and Gemmeiza10 carried the Yr9 gene. Only one genotype, Sids13, was found to have the Yr17 gene. Genes Yr18 and Yr29 were identified in Sids14, Giza168, Giza170, Gemmeiza9, and Gemmeiza10. However, none of the wheat genotypes showed the presence of Yr5, Yr10, or Yr15. Several backcrossing generations were conducted to introduce the Yr5 and Yr10 genes into susceptible genotypes (Misr1, Misr2, and Gemmeiza11). These genotypes are cultivated globally and are known for producing high-quality flour, making them of great importance to farmers. The study demonstrates significant potential for enhancing wheat genotypes for stripe rust resistance and increased production.</p>","PeriodicalId":9198,"journal":{"name":"BMC Plant Biology","volume":null,"pages":null},"PeriodicalIF":4.3,"publicationDate":"2024-08-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11334449/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142003660","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Spermidine augments salt stress resilience in rice roots potentially by enhancing OsbZIP73's RNA binding capacity. 精胺可通过增强 OsbZIP73 的 RNA 结合能力来增强水稻根系的盐胁迫恢复能力。
IF 4.3 2区 生物学
BMC Plant Biology Pub Date : 2024-08-20 DOI: 10.1186/s12870-024-05492-9
Xuefeng Shen, Shuangfeng Dai, Mingming Chen, Yongxiang Huang
{"title":"Spermidine augments salt stress resilience in rice roots potentially by enhancing OsbZIP73's RNA binding capacity.","authors":"Xuefeng Shen, Shuangfeng Dai, Mingming Chen, Yongxiang Huang","doi":"10.1186/s12870-024-05492-9","DOIUrl":"10.1186/s12870-024-05492-9","url":null,"abstract":"<p><strong>Background: </strong>Rice is a staple crop for over half of the global population, but soil salinization poses a significant threat to its production. As a type of polyamine, spermidine (Spd) has been shown to reduce stress-induced damage in plants, but its specific role and mechanism in protecting rice roots under salt stress require further investigation.</p><p><strong>Results: </strong>This study suggested spermidine (Spd) mitigates salt stress on rice root growth by enhancing antioxidant enzyme activity and reducing peroxide levels. Transcriptomic analysis showed that salt stress caused 333 genes to be upregulated and 1,765 to be downregulated. However, adding Spd during salt treatment significantly altered this pattern: 2,298 genes were upregulated and 844 were downregulated, which indicated Spd reverses some transcriptional changes caused by salt stress. KEGG pathway analysis suggested that Spd influenced key signaling pathways, including MAPK signaling, plant hormone signal transduction, and phenylalanine metabolism. Additionally, the bZIP transcription factor OsbZIP73 was upregulated after Spd treatment, which is confirmed by Western blot. Further insights into the interaction between OsbZIP73 and Spd were gained through fluorescence polarization experiments, showing that Spd enhances protein OsbZIP73's affinity for RNA. Functional enrichment analyses revealed that OsPYL1, OsSPARK1, and various SAUR family genes involved in Spd-affected pathways. The presence of G/A/C-box elements in these genes suggests they are potential targets for OsbZIP73.</p><p><strong>Conclusions: </strong>Our findings suggest a strategy of using spermidine as a chemical alleviator for salt stress and provide insights into the regulatory function of OsbZIP73 in mitigating salt stress in rice roots.</p>","PeriodicalId":9198,"journal":{"name":"BMC Plant Biology","volume":null,"pages":null},"PeriodicalIF":4.3,"publicationDate":"2024-08-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11334393/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142003662","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Role of plant functional traits in the invasion success: analysis of nine species of Asteraceae. 植物功能特征在入侵成功中的作用:对九种菊科植物的分析。
IF 4.3 2区 生物学
BMC Plant Biology Pub Date : 2024-08-19 DOI: 10.1186/s12870-024-05498-3
Amarpreet Kaur, Aditi Sharma, Shalinder Kaur, Manzer H Siddiqui, Saud Alamri, Mustaqeem Ahmad, Ravinder Kumar Kohli, Harminder Pal Singh, Daizy Rani Batish
{"title":"Role of plant functional traits in the invasion success: analysis of nine species of Asteraceae.","authors":"Amarpreet Kaur, Aditi Sharma, Shalinder Kaur, Manzer H Siddiqui, Saud Alamri, Mustaqeem Ahmad, Ravinder Kumar Kohli, Harminder Pal Singh, Daizy Rani Batish","doi":"10.1186/s12870-024-05498-3","DOIUrl":"10.1186/s12870-024-05498-3","url":null,"abstract":"<p><p>Various attributes are hypothesized to facilitate the dominance of an invasive species in non-native geographical and ecological regimes. To explore the characteristic invasive attributes of the family Asteraceae, a comparative study was conducted among nine species of this family, co-occurring in the western Himalayan region. Based on their nativity and invasion status, the species were categorized as \"Invasive\", \"Naturalized\", and \"Native\". Fifteen plant functional traits, strongly linked with invasion, were examined in the test species. The analyses revealed a strong dissimilarity between all the plant functional traits (except leaf carbon [Leaf C]) represented by \"Invasive\" and \"Native\" categories and most of the traits (except leaf area [LA], leaf nitrogen [Leaf N], Leaf C, and leaf carbon-nitrogen ratio [C: N]) represented by the \"Naturalized\" and \"Native\" categories. Similarly, \"Invasive\" and \"Naturalized\" categories also varied significantly for most of the traits (except Leaf N, Leaf C, capitula per m² population [C<sub>m²</sub>], seeds per capitula [S<sub>capitula</sub>], and seed mass). Invasive species are characterized by high LA, specific leaf area [SLA] and germination, and low C:N and leaf construction costs [LCC]. Most of the traits represented by native species justify their non-invasive behavior; whereas the naturalized species, despite having better size metrics (plant height), resource investment strategy (aboveground non-reproductive biomass [BNR], and aboveground reproductive biomass [BR]), and reproductive output (capitula per individual plant [C<sub>plant</sub>], and seeds per individual plant [S<sub>plant</sub>]) failed to invade, which implies that the role of these functional aspects in imparting invasion potential to a species is not consistent in all the ecosystems and/or phylogenetic groups. Results of PCA revealed that trait divergence plays a more imperative role in invasion success than naturalization in the species of the family Asteraceae. The present study is intended to refine the pre-generalized invasion concepts associated with family Asteraceae to ensure more accurate identification of the potential invaders and better management of the existing ones.</p>","PeriodicalId":9198,"journal":{"name":"BMC Plant Biology","volume":null,"pages":null},"PeriodicalIF":4.3,"publicationDate":"2024-08-19","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11331814/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142003661","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Correction: Perturbation of periodic spot-generation balance leads to diversified pigmentation patterning of harlequin Phalaenopsis orchids: in silico prediction. 更正:周期性斑点生成平衡的扰动导致蝴蝶兰色素斑纹的多样化:硅学预测。
IF 4.3 2区 生物学
BMC Plant Biology Pub Date : 2024-08-17 DOI: 10.1186/s12870-024-05475-w
Ti-Wen Lu, Wen-Huei Chen, Pao-Yang Chen, Yu-Chen Shu, Hong-Hwa Chen
{"title":"Correction: Perturbation of periodic spot-generation balance leads to diversified pigmentation patterning of harlequin Phalaenopsis orchids: in silico prediction.","authors":"Ti-Wen Lu, Wen-Huei Chen, Pao-Yang Chen, Yu-Chen Shu, Hong-Hwa Chen","doi":"10.1186/s12870-024-05475-w","DOIUrl":"10.1186/s12870-024-05475-w","url":null,"abstract":"","PeriodicalId":9198,"journal":{"name":"BMC Plant Biology","volume":null,"pages":null},"PeriodicalIF":4.3,"publicationDate":"2024-08-17","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11329997/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141995269","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Insights into trehalose mediated physiological and biochemical mechanisms in Zea mays L. under chromium stress. 对铬胁迫下玉米三卤糖介导的生理生化机制的认识
IF 4.3 2区 生物学
BMC Plant Biology Pub Date : 2024-08-17 DOI: 10.1186/s12870-024-05514-6
Sadia Zafar, Inam Mehdi Khan, Muhammad Arslan Ashraf, Muhammad Zafar, Mushtaq Ahmad, Rizwan Rasheed, Ansar Mehmood, Khawaja Shafique Ahmad
{"title":"Insights into trehalose mediated physiological and biochemical mechanisms in Zea mays L. under chromium stress.","authors":"Sadia Zafar, Inam Mehdi Khan, Muhammad Arslan Ashraf, Muhammad Zafar, Mushtaq Ahmad, Rizwan Rasheed, Ansar Mehmood, Khawaja Shafique Ahmad","doi":"10.1186/s12870-024-05514-6","DOIUrl":"10.1186/s12870-024-05514-6","url":null,"abstract":"<p><strong>Background: </strong>Chromium (Cr) toxicity significantly threatens agricultural ecosystems worldwide, adversely affecting plant growth and development and reducing crop productivity. Trehalose, a non-reducing sugar has been identified as a mitigator of toxic effects induced by abiotic stressors such as drought, salinity, and heavy metals. The primary objective of this study was to investigate the influence of exogenously applied trehalose on maize plants exposed to Cr stress.</p><p><strong>Results: </strong>Two maize varieties, FH-1046 and FH-1453, were subjected to two different Cr concentrations (0.3 mM, and 0.5 mM). The results revealed significant variations in growth and biochemical parameters for both maize varieties under Cr-induced stress conditions as compared to the control group. Foliar application of trehalose at a concentration of 30 mM was administered to both maize varieties, leading to a noteworthy reduction in the detrimental effects of Cr stress. Notably, the Cr (0.5 mM) stress more adversely affected the shoot length more than 0.3mM of Cr stress. Cr stress (0.5 mM) significantly reduced the shoot length by 12.4% in FH-1046 and 24.5% in FH-1453 while Trehalose increased shoot length by 30.19% and 4.75% in FH-1046 and FH-1453 respectively. Cr stress significantly constrained growth and biochemical processes, whereas trehalose notably improved plant growth by reducing Cr uptake and minimizing oxidative stress caused by Cr. This reduction in oxidative stress was evidenced by decreased production of proline, SOD, POD, MDA, H<sub>2</sub>O<sub>2</sub>, catalase, and APX. Trehalose also enhanced photosynthetic activities under Cr stress, as indicated by increased values of chlorophyll a, b, and carotenoids. Furthermore, the ameliorative potential of trehalose was demonstrated by increased contents of proteins and carbohydrates and a decrease in Cr uptake.</p><p><strong>Conclusions: </strong>The study demonstrates that trehalose application substantially improved growth and enhanced photosynthetic activities in both maize varieties. Trehalose (30 mM) significantly increased the plant biomass, reduced ROS production and enhanced resilience to Cr stress even at 0.5 mM.</p>","PeriodicalId":9198,"journal":{"name":"BMC Plant Biology","volume":null,"pages":null},"PeriodicalIF":4.3,"publicationDate":"2024-08-17","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11330127/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141995270","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
β-Aminobutyric acid promotes stress tolerance, physiological adjustments, as well as broad epigenetic changes at DNA and RNA nucleobases in field elms (Ulmus minor). β-氨基丁酸能促进田野榆树(Ulmus minor)的抗逆性、生理调节以及 DNA 和 RNA 核碱基的广泛表观遗传变化。
IF 4.3 2区 生物学
BMC Plant Biology Pub Date : 2024-08-15 DOI: 10.1186/s12870-024-05425-6
Hans Hoenicka, Susanne Bein, Marta Starczak, Wolfgang Graf, Dieter Hanelt, Daniel Gackowski
{"title":"β-Aminobutyric acid promotes stress tolerance, physiological adjustments, as well as broad epigenetic changes at DNA and RNA nucleobases in field elms (Ulmus minor).","authors":"Hans Hoenicka, Susanne Bein, Marta Starczak, Wolfgang Graf, Dieter Hanelt, Daniel Gackowski","doi":"10.1186/s12870-024-05425-6","DOIUrl":"10.1186/s12870-024-05425-6","url":null,"abstract":"<p><strong>Background: </strong>β-Aminobutyric acid (BABA) has been successfully used to prime stress resistance in numerous plant species; however, its effectiveness in forest trees has been poorly explored thus far. This study aimed to investigate the influence of BABA on morphological, physiological, and epigenetic parameters in field elms under various growth conditions. Epigenetic changes were assessed in both DNA and RNA through the use of reversed-phase ultra-performance liquid chromatography (UPLC) coupled with sensitive mass spectrometry.</p><p><strong>Results: </strong>The presented results confirm the influence of BABA on the development, physiology, and stress tolerance in field elms. However, the most important findings are related to the broad epigenetic changes promoted by this amino acid, which involve both DNA and RNA. Our findings confirm, for the first time, that BABA influences not only well-known epigenetic markers in plants, such as 5-methylcytosine, but also several other non-canonical nucleobases, such as 5-hydroxymethyluracil, 5-formylcytosine, 5-hydroxymethylcytosine, N6-methyladenine, uracil (in DNA) and thymine (in RNA). The significant effect on the levels of N6-methyladenine, the main bacterial epigenetic marker, is particularly noteworthy. In this case, the question arises as to whether this effect is due to epigenetic changes in the microbiome, the plant genome, or both.</p><p><strong>Conclusions: </strong>The plant phenotype is the result of complex interactions between the plant's DNA, the microbiome, and the environment. We propose that different types of epigenetic changes in the plant and microbiome may play important roles in the largely unknown memory process that enables plants to adapt faster to changing environmental conditions.</p>","PeriodicalId":9198,"journal":{"name":"BMC Plant Biology","volume":null,"pages":null},"PeriodicalIF":4.3,"publicationDate":"2024-08-15","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11325618/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141987415","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Plastome structure and phylogenetic relationships of genus Hydrocotyle (apiales): provide insights into the plastome evolution of Hydrocotyle. 杏属(Hydrocotyle)的质体结构和系统发育关系:提供有关杏属(Hydrocotyle)质体进化的见解。
IF 4.3 2区 生物学
BMC Plant Biology Pub Date : 2024-08-15 DOI: 10.1186/s12870-024-05483-w
Jun Wen, Bao-Cheng Wu, Hui-Min Li, Wei Zhou, Chun-Feng Song
{"title":"Plastome structure and phylogenetic relationships of genus Hydrocotyle (apiales): provide insights into the plastome evolution of Hydrocotyle.","authors":"Jun Wen, Bao-Cheng Wu, Hui-Min Li, Wei Zhou, Chun-Feng Song","doi":"10.1186/s12870-024-05483-w","DOIUrl":"10.1186/s12870-024-05483-w","url":null,"abstract":"<p><strong>Background: </strong>The genus Hydrocotyle Tourn. ex L. is a key group for further study on the evolution of Apiales, comprising around 170 species globally. Previous studies mainly focused on separate sections and provided much information about this genus, but its infrageneric relationships are still confusing. In addition, the genetic basis of its adaptive evolution remains poorly understood. To investigate the phylogeny and evolution of the genus, we selected ten representative species covering two of three diversity distribution centers and exhibiting rich morphology diversity. Comparative plastome analysis was conducted to clarify the structural character of Hydrocotyle plastomes. Positive selection analyses were implemented to assess the evolution of the genus. Phylogenetic inferences with protein-coding sequences (CDS) of Hydrocotyle and 17 related species were also performed.</p><p><strong>Results: </strong>Plastomes within Hydrocotyle were generally conservative in structure, gene order, and size. A total of 14 regions (rps16-trnK, trnQ-rps16, atpI-atpH, trnC-petN-psbM, ycf3-trnS, accD-psaI-ycf4, petA-psbJ, rps12-rpl20, rpl16 intron, rps3-rpl16 intron, rps9-rpl22, ndhF-rpl32, ndhA intron, and ycf1a) were recognized as hotspot regions within the genus, which suggested to be promising DNA barcodes for global phylogenetic analysis of Hydrocotyle. The ycf15 gene was suggested to be a protein-coding gene for Hydrocotyle species, and it could be used as a DNA barcode to identify Hydrocotyle. In phylogenetic analysis, three monophyletic clades (Clade I, II, III) were identified with evidence of rapid radiation speciation within Clade I. The selective pressure analysis detected that six CDS genes (ycf1b, matK, atpF, accD, rps14, and psbB) of Hydrocotyle species were under positive selection. Within the genus, the last four genes were conservative, suggesting a relation to the unique evolution of the genus in Apiales. Seven genes (atpE, matK, psbH, ycf1a, ycf1b, rpoA, and ycf2) were detected to be under some degree of positive selection in different taxa within the genus Hydrocotyle, indicating their role in the adaptive evolution of species.</p><p><strong>Conclusions: </strong>Our study offers new insights into the phylogeny and adaptive evolution of Hydrocotyle. The plastome sequences could significantly enhance phylogenetic resolution and provide genomic resources and potential DNA markers useful for future studies of the genus.</p>","PeriodicalId":9198,"journal":{"name":"BMC Plant Biology","volume":null,"pages":null},"PeriodicalIF":4.3,"publicationDate":"2024-08-15","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11325595/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141987413","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Comparative transcriptomic and metabolomic analyses provide insights into the responses to high temperature stress in Alfalfa (Medicago sativa L.). 转录组和代谢组的比较分析有助于深入了解紫花苜蓿(Medicago sativa L.)对高温胁迫的反应。
IF 4.3 2区 生物学
BMC Plant Biology Pub Date : 2024-08-15 DOI: 10.1186/s12870-024-05494-7
Juan Zhou, Xueshen Tang, Jiahao Li, Shizhuo Dang, Haimei Ma, Yahong Zhang
{"title":"Comparative transcriptomic and metabolomic analyses provide insights into the responses to high temperature stress in Alfalfa (Medicago sativa L.).","authors":"Juan Zhou, Xueshen Tang, Jiahao Li, Shizhuo Dang, Haimei Ma, Yahong Zhang","doi":"10.1186/s12870-024-05494-7","DOIUrl":"10.1186/s12870-024-05494-7","url":null,"abstract":"<p><p>High temperature stress is one of the most severe forms of abiotic stress in alfalfa. With the intensification of climate change, the frequency of high temperature stress will further increase in the future, which will bring challenges to the growth and development of alfalfa. Therefore, untargeted metabolomic and RNA-Seq profiling were implemented to unravel the possible alteration in alfalfa seedlings subjected to different temperature stress (25 ℃, 30 ℃, 35 ℃, 40 ℃) in this study. Results revealed that High temperature stress significantly altered some pivotal transcripts and metabolites. The number of differentially expressed genes (DEGs) markedly up and down-regulated was 1876 and 1524 in T30_vs_CK, 2, 815 and 2667 in T35_vs_CK, and 2115 and 2, 226 in T40_vs_CK, respectively. The number for significantly up-regulated and down-regulated differential metabolites was 173 and 73 in T30_vs_CK, 188 and 57 in T35_vs_CK, and 220 and 66 in T40_vs_CK, respectively. It is worth noting that metabolomics and transcriptomics co-analysis characterized enriched in plant hormone signal transduction (ko04705), glyoxylate and dicarboxylate metabolism (ko00630), from which some differentially expressed genes and differential metabolites participated. In particular, the content of hormone changed significantly under T40 stress, suggesting that maintaining normal hormone synthesis and metabolism may be an important way to improve the HTS tolerance of alfalfa. The qRT-PCR further showed that the expression pattern was similar to the expression abundance in the transcriptome. This study provides a practical and in-depth perspective from transcriptomics and metabolomics in investigating the effects conferred by temperature on plant growth and development, which provided the theoretical basis for breeding heat-resistant alfalfa.</p>","PeriodicalId":9198,"journal":{"name":"BMC Plant Biology","volume":null,"pages":null},"PeriodicalIF":4.3,"publicationDate":"2024-08-15","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11325607/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141981763","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The costs and benefits of symbiotic interactions: variable effects of rhizobia and arbuscular mycorrhizae on Vigna radiata accessions. 共生相互作用的成本与收益:根瘤菌和丛枝菌根对黑木耳品种的不同影响。
IF 4.3 2区 生物学
BMC Plant Biology Pub Date : 2024-08-15 DOI: 10.1186/s12870-024-05488-5
Chih-Cheng Chien, Shang-Ying Tien, Shu-Yi Yang, Cheng-Ruei Lee
{"title":"The costs and benefits of symbiotic interactions: variable effects of rhizobia and arbuscular mycorrhizae on Vigna radiata accessions.","authors":"Chih-Cheng Chien, Shang-Ying Tien, Shu-Yi Yang, Cheng-Ruei Lee","doi":"10.1186/s12870-024-05488-5","DOIUrl":"10.1186/s12870-024-05488-5","url":null,"abstract":"<p><strong>Background: </strong>The symbiosis among plants, rhizobia, and arbuscular mycorrhizal fungi (AMF) is one of the most well-known symbiotic relationships in nature. However, it is still unclear how bilateral/tripartite symbiosis works under resource-limited conditions and the diverse genetic backgrounds of the host.</p><p><strong>Results: </strong>Using a full factorial design, we manipulated mungbean accessions/subspecies, rhizobia, and AMF to test their effects on each other. Rhizobia functions as a typical facilitator by increasing plant nitrogen content, plant weight, chlorophyll content, and AMF colonization. In contrast, AMF resulted in a tradeoff in plants (reducing biomass for phosphorus acquisition) and behaved as a competitor in reducing rhizobia fitness (nodule weight). Plant genotype did not have a significant effect on AMF fitness, but different mungbean accessions had distinct rhizobia affinities. In contrast to previous studies, the positive relationship between plant and rhizobia fitness was attenuated in the presence of AMF, with wild mungbean being more responsive to the beneficial effect of rhizobia and attenuation by AMF.</p><p><strong>Conclusions: </strong>We showed that this complex tripartite relationship does not unconditionally benefit all parties. Moreover, rhizobia species and host genetic background affect the symbiotic relationship significantly. This study provides a new opportunity to re-evaluate the relationships between legume plants and their symbiotic partners.</p>","PeriodicalId":9198,"journal":{"name":"BMC Plant Biology","volume":null,"pages":null},"PeriodicalIF":4.3,"publicationDate":"2024-08-15","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11325573/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141987414","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
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