Biomedical Research-tokyo最新文献

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Immunohistochemical characterization of the mandibular condyle for type I and II collagen, aggrecan, MMP-9, and MMP-13 in MMP-2-deficient mice. mmp -2缺陷小鼠下颌髁I型和II型胶原蛋白、聚集蛋白、MMP-9和MMP-13的免疫组织化学表征
IF 1.2 4区 医学
Biomedical Research-tokyo Pub Date : 2023-01-01 DOI: 10.2220/biomedres.44.65
Mu-Chen Yang, Megumi Nakamura, Miyuki Mayanagi, Yasuyuki Sasano
{"title":"Immunohistochemical characterization of the mandibular condyle for type I and II collagen, aggrecan, MMP-9, and MMP-13 in MMP-2-deficient mice.","authors":"Mu-Chen Yang,&nbsp;Megumi Nakamura,&nbsp;Miyuki Mayanagi,&nbsp;Yasuyuki Sasano","doi":"10.2220/biomedres.44.65","DOIUrl":"https://doi.org/10.2220/biomedres.44.65","url":null,"abstract":"<p><p>Mice devoid of matrix metalloproteinase (MMP)-2 due to gene targeting have been reported to show articular cartilage destruction in the knee joint; however, the phenotype of the mandibular condylar cartilage remains unknown. Thus, in the present study, we investigated the mandibular condyle in Mmp2<sup>-/-</sup> mice. We obtained and bred Mmp2<sup>-/-</sup> mice from the same source as the previous study, and performed genotyping using genomic DNA extracted from finger snips. The mandibular condyle of Mmp2<sup>-/-</sup> mice and wild-type (WT) mice was immunohistochemically examined for the localization of extracellular matrix (ECM) proteins (type I and II collagen, and aggrecan), and MMP-9 and MMP-13. No cartilage destruction was observed in the mandibular condyle of Mmp2<sup>-/-</sup> mice, and no difference was found in the localization of the ECM proteins between the Mmp2<sup>-/-</sup> mice and WT mice. However, the bone marrow cavity in the subchondral bone of the mandibular condyle was more distinct in Mmp2<sup>-/-</sup> mice than in WT mice at the age of 50 weeks. Of note, MMP-9 characteristically localized in multinucleated cells in the mandibular condyle in 50-week-old Mmp2<sup>-/-</sup> mice. MMP-2 may be involved in the regulation of osteoclast differentiation and the formation of the bone marrow cavity in aged mice.</p>","PeriodicalId":9138,"journal":{"name":"Biomedical Research-tokyo","volume":"44 2","pages":"65-72"},"PeriodicalIF":1.2,"publicationDate":"2023-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9241031","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
A point of view on human fat olfaction - do fatty derivatives serve as cues for awareness of dietary fats? 关于人类脂肪嗅觉的观点——脂肪衍生物是否可以作为对膳食脂肪认知的线索?
IF 1.2 4区 医学
Biomedical Research-tokyo Pub Date : 2023-01-01 DOI: 10.2220/biomedres.44.127
Satoshi Tsuzuki
{"title":"A point of view on human fat olfaction - do fatty derivatives serve as cues for awareness of dietary fats?","authors":"Satoshi Tsuzuki","doi":"10.2220/biomedres.44.127","DOIUrl":"https://doi.org/10.2220/biomedres.44.127","url":null,"abstract":"<p><p>Fat (triglycerides) consumption is critical for the survival of animals, including humans. Being able to smell fat can be advantageous in judging food value. However, fat has poor volatility; thus, olfaction of fat seems impossible. What about fatty acids that comprise fat? Humans smell and discriminate medium-chain fatty acids. However, no conclusive evidence has been provided for the olfactory sense of long-chain fatty acids, including essential acids such as linoleic acid (LA). Instead, humans likely perceive the presence of essential fatty acids through the olfaction of volatile compounds generated by their oxidative breakdown (e.g., hexanal and γ-decalactone). For some people, such scents are pleasing, especially when they come from fruit. Nonetheless, it remains unclear whether the olfaction of these volatiles leads to the recognition of fat per se. Nowadays, people often smell LA-borne aldehydes such as E,E-2,4-decadienal that occur appreciably, for example, from edible oils during deep frying, and are pronely captivated by their characteristic \"fatty\" note, which can be considered a \"pseudo-perception\" of fat. However, our preference for such LA-borne aldehyde odors may be a potential cause behind the modern overdose of n-6 fatty acids. This review aims to provide a view of whether and, if any, how we olfactorily perceive dietary fats and raises future purposes related to human fat olfaction, such as investigating sub-olfactory systems for detecting long-chain fatty acids.</p>","PeriodicalId":9138,"journal":{"name":"Biomedical Research-tokyo","volume":"44 4","pages":"127-146"},"PeriodicalIF":1.2,"publicationDate":"2023-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9943308","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Anatomical basis of gastrin- and CCK-secreting cells and their functions. A review. 胃泌素和cck分泌细胞的解剖基础及其功能。复习一下。
IF 1.2 4区 医学
Biomedical Research-tokyo Pub Date : 2023-01-01 DOI: 10.2220/biomedres.44.81
Toshihiko Iwanaga
{"title":"Anatomical basis of gastrin- and CCK-secreting cells and their functions. A review.","authors":"Toshihiko Iwanaga","doi":"10.2220/biomedres.44.81","DOIUrl":"https://doi.org/10.2220/biomedres.44.81","url":null,"abstract":"<p><p>Gastrin and CCK (cholecystokinin), gut hormones first secreted after postprandial stages, share the C-terminal amino acids and some types of receptors to be stimulated. Both types of hormone-secreting cells are typical open-type cells which detect foods and their digested elements in the lumen and regulate the secretion of gastric acid and digestive enzymes, gut motility, and satiety. Gastrin cell granules are characterized by their heterogenous ultrastructure within the cell, while CCK cell granules show a uniform ultrastructural figure. Gastrin cells are equipped with peptone receptor GPR92, amino acid receptor GPRC6A, and a Ca-sensing receptor. In addition to nutrient receptors, the release of CCK is regulated by a unique negative feedback mechanism. Development of an antibody for CCK-specific receptor (CCK-1R) has revealed its exact localization throughout the body, but specific antibodies against CCK-2R remain unavailable. Gastrin affects differentiation and proliferation-including cancer cells, while CCK possesses trophic effects to target tissues. CCK is a peripheral satiety signal and acts either via the vagus or directly on the dorsal medulla via CCK-1R. In this review, endocrine cells secreting these unique and so-called old gut hormones are described on a morphological basis.</p>","PeriodicalId":9138,"journal":{"name":"Biomedical Research-tokyo","volume":"44 3","pages":"81-95"},"PeriodicalIF":1.2,"publicationDate":"2023-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9618280","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 2
Cannabinoid receptors involved in descending inhibition on spinal seizure-like activity in the phrenic output. 大麻素受体参与下降抑制脊髓癫痫样活动在膈输出。
IF 1.2 4区 医学
Biomedical Research-tokyo Pub Date : 2023-01-01 DOI: 10.2220/biomedres.44.41
Shih Tien Lin, Makito Iizuka, Yoshihiro Mikami, Shunya Yoda, Hiroshi Onimaru, Masahiko Izumizaki
{"title":"Cannabinoid receptors involved in descending inhibition on spinal seizure-like activity in the phrenic output.","authors":"Shih Tien Lin,&nbsp;Makito Iizuka,&nbsp;Yoshihiro Mikami,&nbsp;Shunya Yoda,&nbsp;Hiroshi Onimaru,&nbsp;Masahiko Izumizaki","doi":"10.2220/biomedres.44.41","DOIUrl":"https://doi.org/10.2220/biomedres.44.41","url":null,"abstract":"<p><p>Seizure-like burst activities are induced by blockade of GABAA and/or glycine receptors in various spinal ventral roots of brainstem-spinal cord preparation from neonatal rodents. We found that this is not applicable to the phrenic nerve and that a new inhibitory descending pathway may suppress seizure-like activity in the phrenic nerve. Experiments were performed in brainstem-spinal cord preparation from newborn rats (age: 0-1 day). Left phrenic nerve and right C4 activities were recorded simultaneously. When GABAA and glycine receptors were blocked by 10 μM bicuculline and 10 μM strychnine (Bic+Str), seizure-like burst activities appeared in the fourth cervical ventral root (C4) but not the phrenic nerve. After making a transverse section at C1, the inspiratory burst activity disappeared from both C4 and the phrenic nerve, whereas seizure-like activity appeared in both nerves. We hypothesized that inhibitory descending pathways other than those via GABAA and/or glycine receptors (from the medulla to the spinal cord) work to avoid disturbance of regular respiratory-related diaphragm contraction by seizure-like activity. We found that cannabinoid receptor antagonist, AM251 was effective for the induction of seizure-like activity by Bic+Str in the phrenic nerve in brainstem-spinal cord preparation. Cannabinoid receptors may be involved in this descending inhibitory system.</p>","PeriodicalId":9138,"journal":{"name":"Biomedical Research-tokyo","volume":"44 2","pages":"41-49"},"PeriodicalIF":1.2,"publicationDate":"2023-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9294541","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 1
GP2-expressing cells: a new guardian with divergent functions in the intestine, eyes, and nose. 表达gp2的细胞:在肠道、眼睛和鼻子中具有不同功能的新守护者。
IF 1.2 4区 医学
Biomedical Research-tokyo Pub Date : 2023-01-01 DOI: 10.2220/biomedres.44.233
Toshihiko Iwanaga, Shunsuke Kimura
{"title":"GP2-expressing cells: a new guardian with divergent functions in the intestine, eyes, and nose.","authors":"Toshihiko Iwanaga, Shunsuke Kimura","doi":"10.2220/biomedres.44.233","DOIUrl":"10.2220/biomedres.44.233","url":null,"abstract":"<p><p>GP (glycoprotein)-2, originally identified as a predominant membranous component of pancreatic acinar cells, has attracted the interest of researchers in mucosal immunology for its role as a functional molecule specific for antigen-sampling cells in the intestinal Peyer's patches. GP2 is involved in the detection of pathological bacteria and is also histologically useful for the identification of the M cell lineage and their differentiation in lymphoid tissues. Subsequent immunohistochemistry for GP2 has revealed a broad distribution of M cells and related cells in the nasopharyngeal lymphoid tissues, conjunctiva, tear duct, and airway. Especially, GP2 cells in the paranasal sinuses and tear duct have been identified as novel types of epithelial cells. The systematic administration of RANKL can induce extra-M cells in conventional epithelia of body. The production and release of GP2 by conjunctival goblet cells and several mucous glands suggests leading roles for mucous cells in protection, including the entrapment of microorganisms for infections. The ocular surface and conjunctiva are connected to the lacrimal sac, nasolacrimal duct, and further nasal cavity, comprising another canal that passes through the body. The broad distribution of GP2-expressingcells may indicate its function as a new guardian in the intestine, eyes, and nose, all of which are exposed to external milieu.</p>","PeriodicalId":9138,"journal":{"name":"Biomedical Research-tokyo","volume":"44 6","pages":"233-243"},"PeriodicalIF":1.2,"publicationDate":"2023-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"138440301","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Comparative analysis of tumor content estimation methods based on simu- lated tumor samples identified their impact on somatic variant detection in cancer whole genome sequencing. 比较分析了基于模拟肿瘤样本的肿瘤含量估计方法,确定了它们对肿瘤全基因组测序中体细胞变异检测的影响。
IF 1.2 4区 医学
Biomedical Research-tokyo Pub Date : 2023-01-01 DOI: 10.2220/biomedres.44.161
Takeshi Nagashima, Kenichi Urakami, Yuji Shimoda, Keiichi Ohshima, Masakuni Serizawa, Keiichi Hatakeyama, Sumiko Ohnami, Shumpei Ohnami, Akane Naruoka, Yasue Horiuchi, Akira Iizuka, Koji Maruyama, Yasuto Akiyama, Ken Yamaguchi
{"title":"Comparative analysis of tumor content estimation methods based on simu- lated tumor samples identified their impact on somatic variant detection in cancer whole genome sequencing.","authors":"Takeshi Nagashima,&nbsp;Kenichi Urakami,&nbsp;Yuji Shimoda,&nbsp;Keiichi Ohshima,&nbsp;Masakuni Serizawa,&nbsp;Keiichi Hatakeyama,&nbsp;Sumiko Ohnami,&nbsp;Shumpei Ohnami,&nbsp;Akane Naruoka,&nbsp;Yasue Horiuchi,&nbsp;Akira Iizuka,&nbsp;Koji Maruyama,&nbsp;Yasuto Akiyama,&nbsp;Ken Yamaguchi","doi":"10.2220/biomedres.44.161","DOIUrl":"https://doi.org/10.2220/biomedres.44.161","url":null,"abstract":"<p><p>Whole genome sequencing (WGS) in cancer genomics has become widespread with recent technological innovations, and the amount and types of information obtained from WGS are increasing rapidly. Appropriate interpretation of results is becoming increasingly important in clinical applications. This study aimed to evaluate the accuracy of tumor content estimation and its impact on somatic variant detection, using 100 simulated tumor samples covering 10-100% tumor content constructed from the sequencing data of cell line models. Extensive analysis revealed that the estimation results varied among computational analytical methods. Notably, there was a large discrepancy in low tumor content (≤ 30%). The reproducibility decreased in cases wherein chromosome-scale copy number changes were observed in normal cells. The minimum tumor content required to detect somatic alterations was estimated to be 10-30%. Identification of whole genome doubling was achieved with the lowest tumor content, followed by single nucleotide variation/insertion or deletion, structural variation, and copy number variation. Tumor content had a significantly higher impact on the false negatives than the false positives in variant calls. Results should be interpreted cautiously for samples wherein tumor content is a concern. These results can form the basis of developing important guidelines for evaluating cancer WGS.</p>","PeriodicalId":9138,"journal":{"name":"Biomedical Research-tokyo","volume":"44 4","pages":"161-171"},"PeriodicalIF":1.2,"publicationDate":"2023-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9952033","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
3-Iodothyronamine, a trace amine-associated receptor agonist, regulates intracellular Ca2+ increases via CaMK II through Epac2 in rat cerebral arterioles. 3-碘甲状腺胺是一种微量胺相关受体激动剂,通过大鼠脑小动脉中的Epac2通过CaMK II调节细胞内Ca2+的增加。
IF 1.2 4区 医学
Biomedical Research-tokyo Pub Date : 2023-01-01 DOI: 10.2220/biomedres.44.219
Wakana Sakanoue, Takuya Yokoyama, Masato Hirakawa, Satsuki Maesawa, Kenichi Sato, Tomoyuki Saino
{"title":"3-Iodothyronamine, a trace amine-associated receptor agonist, regulates intracellular Ca2+ increases via CaMK II through Epac2 in rat cerebral arterioles.","authors":"Wakana Sakanoue,&nbsp;Takuya Yokoyama,&nbsp;Masato Hirakawa,&nbsp;Satsuki Maesawa,&nbsp;Kenichi Sato,&nbsp;Tomoyuki Saino","doi":"10.2220/biomedres.44.219","DOIUrl":"10.2220/biomedres.44.219","url":null,"abstract":"<p><p>Trace amines (TAs) in the nervous system bind to TA-associated receptors (TAARs) and are involved in the regulation of monoaminergic functions. Among TAAR subtypes, TAAR1 has been implicated in the development of neurological disorders, such as schizophrenia. The present study investigated the effects of the TAAR1 agonist, 3-iodothyronamine (T1AM) on cerebral arterioles using fluctuations in the intracellular concentration of Ca2+ ([Ca2+]i) as an index of contractile responses. In cerebral arterioles, most of the TAAR agonists did not increase [Ca2+]i, while only T1AM elevated [Ca2+]i in vascular smooth muscle cells. This increase involved extracellular Ca2+ influx through T-type Ca2+ channels and inositol trisphosphate- and ryanodine-receptor-mediated Ca2+ release from intracellular stores. The inhibition of the cAMP sensor, exchange protein directly activated by cAMP (Epac) 2, and calmodulin kinase (CaMK) II strongly inhibited Ca2+ elevations. The present study revealed that T1AM acted not only on the TAAR1 receptor as previously suggested, but also on other G-protein coupled receptors and/or signal transduction systems to increase intracellular Ca2+ in cerebral arteriole smooth muscle cells. These results suggest that when using T1AM in clinical practice, attention should be paid to the early rise in blood pressure.</p>","PeriodicalId":9138,"journal":{"name":"Biomedical Research-tokyo","volume":"44 5","pages":"219-232"},"PeriodicalIF":1.2,"publicationDate":"2023-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"41153890","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 1
Impact of somatic mutations and transcriptomic alterations on cancer aneuploidy. 体细胞突变和转录组改变对癌症非整倍体的影响。
IF 1.2 4区 医学
Biomedical Research-tokyo Pub Date : 2023-01-01 DOI: 10.2220/biomedres.44.187
Keiichi Hatakeyama, Takeshi Nagashima, Keiichi Ohshima, Sumiko Ohnami, Shumpei Ohnami, Yuji Shimoda, Akane Naruoka, Koji Maruyama, Akira Iizuka, Tadashi Ashizawa, Hirotsugu Kenmotsu, Tohru Mochizuki, Kenichi Urakami, Yasuto Akiyama, Ken Yamaguchi
{"title":"Impact of somatic mutations and transcriptomic alterations on cancer aneuploidy.","authors":"Keiichi Hatakeyama,&nbsp;Takeshi Nagashima,&nbsp;Keiichi Ohshima,&nbsp;Sumiko Ohnami,&nbsp;Shumpei Ohnami,&nbsp;Yuji Shimoda,&nbsp;Akane Naruoka,&nbsp;Koji Maruyama,&nbsp;Akira Iizuka,&nbsp;Tadashi Ashizawa,&nbsp;Hirotsugu Kenmotsu,&nbsp;Tohru Mochizuki,&nbsp;Kenichi Urakami,&nbsp;Yasuto Akiyama,&nbsp;Ken Yamaguchi","doi":"10.2220/biomedres.44.187","DOIUrl":"10.2220/biomedres.44.187","url":null,"abstract":"<p><p>Aneuploidy has been recognized as one of hallmark of tumorigenesis since the early 20th century. Recent developments in structural variation analysis in the human genome have revealed the diversity of aneuploidy in cancer. However, the effects of gene mutation and expression in tumors on aneuploidy remain poorly understood. Here, we performed whole exome analysis of over 5,000 Japanese cancer cases and investigated the impact of somatic mutations and gene expression alterations on aneuploidy. First, we evaluated tumor content and genomic alterations that could influence aneuploidy. Next, we compared the aneuploidy frequency in 18 cancer types and observed that TP53 mutations were associated with the aneuploidy on specific chromosomes in colorectal and gastric cancers. Finally, we used expression analysis to isolate pathways involved in aneuploidy accumulation from tumors without TP53 mutations. Chromosomal instability and cell cycle aberration were associated with aneuploidy in TP53 wild-type tumors, and 26 commonly upregulated genes were identified in aneuploidy-high solid tumors without TP53 mutations. Among them, two cancer-related genes (CENPA and PBK) were involved in aneuploidy. Our integrated analysis revealed that both TP53 mutations and transcriptomic alterations independent of somatic mutations affect aneuploidy accumulation. Our findings will facilitate further understanding of diverse aneuploidies in the tumorigenesis.</p>","PeriodicalId":9138,"journal":{"name":"Biomedical Research-tokyo","volume":"44 5","pages":"187-197"},"PeriodicalIF":1.2,"publicationDate":"2023-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"41094146","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The effect of the formalin-fixed paraffin-embedded process on salivary microbiota profiling. 福尔马林固定石蜡包埋工艺对唾液微生物群谱的影响。
IF 1.2 4区 医学
Biomedical Research-tokyo Pub Date : 2023-01-01 DOI: 10.2220/biomedres.44.117
Hiroto Sano, Takuichi Sato, Yoriaki Kanri, Junya Ono, Yasuo Okada
{"title":"The effect of the formalin-fixed paraffin-embedded process on salivary microbiota profiling.","authors":"Hiroto Sano,&nbsp;Takuichi Sato,&nbsp;Yoriaki Kanri,&nbsp;Junya Ono,&nbsp;Yasuo Okada","doi":"10.2220/biomedres.44.117","DOIUrl":"https://doi.org/10.2220/biomedres.44.117","url":null,"abstract":"<p><p>In recent years, bacterial DNA in formalin-fixed paraffin-embedded (FFPE) samples has been recognized as a valuable bioresource for microbiota studies. This study aimed to examine the effect of the FFPE process on microbiota profiling to evaluate whether FFPE samples could serve as an alternative bioresource to fresh samples in oral microbiota studies. Fresh saliva was collected from nine subjects. The pellets obtained by centrifuging the collected saliva were fixed in formalin, then dehydrated and embedded in paraffin to prepare FFPE samples. The abundance of the hypervariable regions V1-9, V1-2, and V3-4 of the 16S rRNA gene in fresh and FFPE samples was relatively compared. In addition, microbiota profiling was performed to compare the results between the two sample types. The results showed that the FFPE process resulted in a certain degree of fragmentation of the 16S rRNA gene. However, the V1-2 region was relatively well-preserved compared to the V1-9 and V3-4 regions, suggesting that short regions are suitable targets for oral microbiota analysis. Importantly, there were no significant differences in alpha and beta diversity of microbiota between fresh and FFPE samples, and microbiota profiles were similar between the two sample types, suggesting that FFPE samples could be a valuable bioresource for oral microbiota studies.</p>","PeriodicalId":9138,"journal":{"name":"Biomedical Research-tokyo","volume":"44 3","pages":"117-126"},"PeriodicalIF":1.2,"publicationDate":"2023-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9565502","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
IL-33 deficiency suppresses alveolar bone loss in a ligature-induced periodontitis model. 在结扎性牙周炎模型中,IL-33缺乏抑制牙槽骨丢失。
IF 1.2 4区 医学
Biomedical Research-tokyo Pub Date : 2023-01-01 DOI: 10.2220/biomedres.44.9
Natsuko Aida, Kazuyoshi Takeda, Susumu Nakae, Hirohisa Saito, Ko Okumura, Toshifumi Azuma, Tatsukuni Ohno
{"title":"IL-33 deficiency suppresses alveolar bone loss in a ligature-induced periodontitis model.","authors":"Natsuko Aida,&nbsp;Kazuyoshi Takeda,&nbsp;Susumu Nakae,&nbsp;Hirohisa Saito,&nbsp;Ko Okumura,&nbsp;Toshifumi Azuma,&nbsp;Tatsukuni Ohno","doi":"10.2220/biomedres.44.9","DOIUrl":"https://doi.org/10.2220/biomedres.44.9","url":null,"abstract":"<p><p>Interleukin-33 (IL-33) is a member of the IL-1 cytokine family that has been studied primarily in the context of type 2 immune responses. Recent reports suggest that IL-33 also enhances the func- tions of various immune cells and contributes to the development of different inflammatory diseas- es. Interestingly, IL-33 and its receptor ST2 axis exerted either inhibitory or promotional effects on alveolar bone loss in various periodontitis models. Using a mouse model of ligature-induced periodontitis, we found that the levels of mRNAs encoding IL-33 and other inflammatory cyto- kines (IL-1α, IL-1β, IL-6, and TNFα) were augmented in gingival tissues of wild-type (WT) mice, and that the alveolar bone loss amount was lower in IL-33-deficient than WT mice. The numbers and proportions of IFN-γ-producing CD8+ T and regulatory T cells were decreased while those of Th17 cells were increased in the draining lymph nodes of IL-33-deficient mice compared to WT mice. Additionally, the level of RNA encoding an osteoclastogenic molecule, i.e., receptor activa- tor of nuclear factor kappa-B ligand (RANKL), in ligated gingival tissue was higher in IL-33-defi- cient than WT mice. These results suggest that IL-33 is involved in alveolar bone loss in the ligature-induced periodontitis model, although IL-33 may inhibit osteoclast differentiation.</p>","PeriodicalId":9138,"journal":{"name":"Biomedical Research-tokyo","volume":"44 1","pages":"9-16"},"PeriodicalIF":1.2,"publicationDate":"2023-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9145539","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 1
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