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Utilizing Zebrafish Embryos for Replication of Tulane Virus: A Human Norovirus Surrogate 利用斑马鱼胚胎复制杜兰病毒:人类诺罗病毒代用品
IF 4.1 2区 农林科学
Food and Environmental Virology Pub Date : 2024-08-23 DOI: 10.1007/s12560-024-09610-6
Sahaana Chandran, Kristen E. Gibson
{"title":"Utilizing Zebrafish Embryos for Replication of Tulane Virus: A Human Norovirus Surrogate","authors":"Sahaana Chandran,&nbsp;Kristen E. Gibson","doi":"10.1007/s12560-024-09610-6","DOIUrl":"10.1007/s12560-024-09610-6","url":null,"abstract":"<div><p>The zebrafish larvae/embryo model has been shown to support the replication of seven strains (G1.7[P7], GII.2[P16], GII.3[P16], GII.4[P4], GII.4[P16], GII.6[P7], and GII.17[P13]) of human norovirus (HuNoV). However, due to challenges in consistently obtaining HuNoV-positive stool samples from clinical sources, evaluating HuNoV surrogates in this model is highly valuable. This study assesses the potential of zebrafish embryos and larvae as a model for Tulane virus (TuV) replication. Three infection methods were examined: microinjection, immersion, and feeding. Droplet digital PCR was used to quantify viral RNA across all three infection methods. Microinjection of 3 nL of TuV into zebrafish embryos (&lt; 6-h post-fertilization) resulted in significant replication, with viral RNA levels reaching 6.22 logs at 4-day post-infection. In contrast, the immersion method showed no replication after immersing 4-day post-fertilization (dpf) larvae in TuV suspension for 6 h. Similarly, no replication was observed with the feeding method, where <i>Paramecium caudatum</i> loaded with TuV were fed to 4 dpf larvae. The findings indicate that the zebrafish embryo model supports TuV replication through the microinjection method, suggesting that TuV may serve as a useful surrogate for studying HuNoV pathogenesis. Additionally, TuV can be utilized in place of HuNoV in method optimization studies using the zebrafish embryo model, circumventing the limited availability of HuNoV.</p></div>","PeriodicalId":563,"journal":{"name":"Food and Environmental Virology","volume":"16 4","pages":"470 - 478"},"PeriodicalIF":4.1,"publicationDate":"2024-08-23","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://link.springer.com/content/pdf/10.1007/s12560-024-09610-6.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142046143","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Comparative Removal of Poliovirus, Rotavirus SA11 and MS2 Coliphage by Point-of-Use Devices used to Treat Drinking Water and Water Disinfectants: A Review 使用点设备处理饮用水和水消毒剂去除脊髓灰质炎病毒、轮状病毒 SA11 和 MS2 Coliphage 的比较:综述。
IF 4.1 2区 农林科学
Food and Environmental Virology Pub Date : 2024-08-20 DOI: 10.1007/s12560-024-09609-z
Samendra P. Sherchan, Charles P. Gerba, Sherif Abd-Elmaksoud
{"title":"Comparative Removal of Poliovirus, Rotavirus SA11 and MS2 Coliphage by Point-of-Use Devices used to Treat Drinking Water and Water Disinfectants: A Review","authors":"Samendra P. Sherchan,&nbsp;Charles P. Gerba,&nbsp;Sherif Abd-Elmaksoud","doi":"10.1007/s12560-024-09609-z","DOIUrl":"10.1007/s12560-024-09609-z","url":null,"abstract":"<div><p>Test protocols have been developed to test water treatment devices/systems for use for treating drinking water that are used at the individual and home level to ensure the removal of waterborne viruses. Current test procedures call for the use of poliovirus type 1 and/or rotavirus SA11. Recently we suggested that selected coliphages could be used as surrogates for poliovirus for testing of point-of-use (POU) water treatment devices, however, rotavirus was not used in those studies. The purpose of this review was to compare studies of POU devices which were tested with poliovirus type 1, simian rotavirus SA11 and coliphage MS2 to determine if the behavior of rotavirus SA11 was significantly different. In addition, an attempt was made to compare the relative resistance of these viruses by various disinfectants used to treat drinking water. In all cases SA11 was removed to an equal or greater degree than poliovirus. SA11 was found to be less resistant to halogens, although one study found it to be more resistance to chloramines than poliovirus and MS2. Based on this review, use of coliphages for testing POU devices appear justified. Additionally, data on chloramines for these viruses would be useful to determine if rotavirus is more resistant than poliovirus and MS2.</p></div>","PeriodicalId":563,"journal":{"name":"Food and Environmental Virology","volume":"16 4","pages":"433 - 437"},"PeriodicalIF":4.1,"publicationDate":"2024-08-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142003306","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Risk for Waterborne Transmission and Environmental Persistence of Avian Influenza Virus in a Wildlife/Domestic Interface in Mexico 禽流感病毒在墨西哥野生动物/家禽栖息地的水传播风险和环境持久性。
IF 4.1 2区 农林科学
Food and Environmental Virology Pub Date : 2024-07-21 DOI: 10.1007/s12560-024-09608-0
Jessica Mateus-Anzola, Liliana Gaytan-Cruz, Ana Cecilia Espinosa-García, Beatriz Martínez-López, Rafael Ojeda-Flores
{"title":"Risk for Waterborne Transmission and Environmental Persistence of Avian Influenza Virus in a Wildlife/Domestic Interface in Mexico","authors":"Jessica Mateus-Anzola,&nbsp;Liliana Gaytan-Cruz,&nbsp;Ana Cecilia Espinosa-García,&nbsp;Beatriz Martínez-López,&nbsp;Rafael Ojeda-Flores","doi":"10.1007/s12560-024-09608-0","DOIUrl":"10.1007/s12560-024-09608-0","url":null,"abstract":"<div><p>Aquatic habitats provide a bridge for influenza transmission among wild and domestic species. However, water sources pose highly variable physicochemical and ecological characteristics that affect avian influenza virus (AIV) stability. Therefore, the risk of survival or transmissibility of AIV in the environment is quite variable and has been understudied. In this study, we determine the risk of waterborne transmission and environmental persistence of AIV in a wild/domestic bird interface in the Central Mexico plateau (North America) during the winter season using a multi-criteria decision analysis (MCDA). A total of 13 eco-epidemiological factors were selected from public-access databases to develop the risk assessment. The MCDA showed that the Atarasquillo wetland presents a higher persistence risk in January. Likewise, most of the backyard poultry farms at this wild-domestic interface present a high persistence risk (50%). Our results suggest that drinking water may represent a more enabling environment for AIV persistence in contrast with wastewater. Moreover, almost all backyard poultry farms evidence a moderate or high risk of waterborne transmission especially farms close to water bodies. The wildlife/domestic bird interface on the Atarasquillo wetland holds eco-epidemiological factors such as the presence of farms in flood-prone areas, the poultry access to outdoor water, and the use of drinking-water troughs among multiple animal species that may enhance waterborne transmission of AIV. These findings highlight the relevance of understanding the influence of multiple factors on AIV ecology for early intervention and long-term control strategies.</p></div>","PeriodicalId":563,"journal":{"name":"Food and Environmental Virology","volume":"16 4","pages":"458 - 469"},"PeriodicalIF":4.1,"publicationDate":"2024-07-21","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://link.springer.com/content/pdf/10.1007/s12560-024-09608-0.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141733152","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Evaluation of an Automated Ultrafiltration System for Concentrating a Range of Viruses from Saline Waters 评估从盐水中浓缩各种病毒的自动超滤系统。
IF 4.1 2区 农林科学
Food and Environmental Virology Pub Date : 2024-06-29 DOI: 10.1007/s12560-024-09602-6
Simran Singh, Tiong Gim Aw, Joan B. Rose
{"title":"Evaluation of an Automated Ultrafiltration System for Concentrating a Range of Viruses from Saline Waters","authors":"Simran Singh,&nbsp;Tiong Gim Aw,&nbsp;Joan B. Rose","doi":"10.1007/s12560-024-09602-6","DOIUrl":"10.1007/s12560-024-09602-6","url":null,"abstract":"<div><p>Pathogenic viruses in environmental water are usually present in levels too low for direct detection and thus, a concentration step is often required to increase the analytical sensitivity. The objective of this study was to evaluate an automated filtration device, the Innovaprep Concentrating Pipette Select (CP Select) for the rapid concentration of viruses in saline water samples, while considering duration of process and ease of use. Four bacteriophages (MS2, P22, Phi6, and PhiX174) and three animal viruses (adenovirus, coronavirus OC43, and canine distemper virus) were seeded in artificial seawater, aquarium water, and bay water samples, and processed using the CP Select. The recovery efficiencies of viruses were determined either using a plaque assay or droplet digital PCR (ddPCR). Using plaque assays, the average recovery efficiencies for bacteriophages ranged from 4.84 ± 3.8% to 82.73 ± 27.3%, with highest recovery for P22 phage. The average recovery efficiencies for the CP Select were 39.31 ± 26.6% for adenovirus, 19.04 ± 11.6% for coronavirus OC43, and 19.84 ± 13.6% for canine distemper virus, as determined by ddPCR. Overall, viral genome composition, not the size of the virus, affected the recovery efficiencies for the CP Select. The small sample volume size used for the ultrafilter pipette of the system hinders the use of this method as a primary concentration step for viruses in marine waters. However, the ease of use and rapid processing time of the CP Select are especially beneficial when rapid detection of viruses in highly contaminated water, such as wastewater or sewage-polluted surface water, is needed.</p><h3>Graphical abstract</h3><div><figure><div><div><picture><source><img></source></picture></div></div></figure></div></div>","PeriodicalId":563,"journal":{"name":"Food and Environmental Virology","volume":"16 3","pages":"422 - 431"},"PeriodicalIF":4.1,"publicationDate":"2024-06-29","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11422421/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141475638","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Tracking the Spread of the BA.2.86 Lineage in Italy Through Wastewater Analysis 通过废水分析追踪 BA.2.86 血统在意大利的传播。
IF 4.1 2区 农林科学
Food and Environmental Virology Pub Date : 2024-06-25 DOI: 10.1007/s12560-024-09607-1
C. Veneri, D. Brandtner, P. Mancini, G. Bonanno Ferraro, M. Iaconelli, E. Suffredini, M. Petrillo, G. Leoni, V. Paracchini, B. M. Gawlik, A. Marchini, the SARI Network, G. La Rosa
{"title":"Tracking the Spread of the BA.2.86 Lineage in Italy Through Wastewater Analysis","authors":"C. Veneri,&nbsp;D. Brandtner,&nbsp;P. Mancini,&nbsp;G. Bonanno Ferraro,&nbsp;M. Iaconelli,&nbsp;E. Suffredini,&nbsp;M. Petrillo,&nbsp;G. Leoni,&nbsp;V. Paracchini,&nbsp;B. M. Gawlik,&nbsp;A. Marchini,&nbsp;the SARI Network,&nbsp;G. La Rosa","doi":"10.1007/s12560-024-09607-1","DOIUrl":"10.1007/s12560-024-09607-1","url":null,"abstract":"<div><p>The emergence of new SARS-CoV-2 variants poses challenges to global surveillance efforts, necessitating swift actions in their detection, evaluation, and management. Among the most recent variants, Omicron BA.2.86 and its sub-lineages have gained attention due to their potential immune evasion properties. This study describes the development of a digital PCR assay for the rapid detection of BA.2.86 and its descendant lineages, in wastewater samples. By using this assay, we analyzed wastewater samples collected in Italy from September 2023 to January 2024. Our analysis revealed the presence of BA.2.86 lineages already in October 2023 with a minimal detection rate of 2% which then rapidly increased, becoming dominant by January 2024, accounting for a prevalence of 62%. The findings emphasize the significance of wastewater-based surveillance in tracking emerging variants and underscore the efficacy of targeted digital PCR assays for environmental monitoring.</p></div>","PeriodicalId":563,"journal":{"name":"Food and Environmental Virology","volume":"16 4","pages":"449 - 457"},"PeriodicalIF":4.1,"publicationDate":"2024-06-25","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://link.springer.com/content/pdf/10.1007/s12560-024-09607-1.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141449245","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Molecular Characterization and Phylogenetic analyses of Rotaviruses Circulating in Municipal Sewage and Sewage-Polluted River Waters in Durban Area, South Africa 南非德班地区城市污水和污水污染河水中轮状病毒的分子特征和系统发育分析。
IF 4.1 2区 农林科学
Food and Environmental Virology Pub Date : 2024-06-24 DOI: 10.1007/s12560-024-09598-z
Cornelius Arome Omatola, Ademola Olufolahan Olaniran
{"title":"Molecular Characterization and Phylogenetic analyses of Rotaviruses Circulating in Municipal Sewage and Sewage-Polluted River Waters in Durban Area, South Africa","authors":"Cornelius Arome Omatola,&nbsp;Ademola Olufolahan Olaniran","doi":"10.1007/s12560-024-09598-z","DOIUrl":"10.1007/s12560-024-09598-z","url":null,"abstract":"<div><p>Globally, rotavirus continues to be the leading etiology of severe pediatric gastroenteritis, and transmission of the disease via environmental reservoirs has become an emerging concern in developing countries. From August to October 2021, a total of 69 samples comprising 48 of raw and treated sewage, and 21 surface waters, were collected from four Durban wastewater treatment plants (DWWTP), and effluent receiving rivers, respectively. Rotaviruses recovered and identified from the samples were subjected to sequencing, genotyping, and phylogenetic analysis. Of the 65 (94.2%) rotavirus-positive samples, 33.3% were from raw sewage, 16% from activated sludge, 15.9% from final effluents, and 29.0% were from the receiving river samples. A total of 49 G and 41 P genotypes were detected in sewage while 15 G and 22 P genotypes were detected in river samples. G1 genotype predominated in sewage (24.5%) followed by G3 (22.4%), G2 (14.3%), G4 (12.2%), G12 (10.2%), G9 (8.2%), and G8 (6.1%). Similarly, G1 predominated in river water samples (33.3%) and was followed by G2, G4 (20.0% each), G3, and G12 (13.3% each). Rotavirus VP4 genotypes P[4], P[6], and P[8] accounted for 36.6%, 29.3%, and 9.8%, respectively, in sewage. Correspondingly, 45.5%, 31.8%, and 13.6% were detected in river samples. The G and P genotypes not identified by the methods used were 2.1% versus 24.3% and 0.1% versus 9.1% for sewage and river water samples, respectively. Sequence comparison studies indicated a high level of nucleotide identity in the G1, G2, G3, G4, G8 VP7, and P[4], P[6], and P[8] VP4 gene sequences between strains from the environment and those from patients in the region. This is the first environmental-based study on the G and P genotypes diversity of rotavirus in municipal wastewater and their receiving rivers in this geographical region. The high similarity between environmental and clinical rotavirus strains suggests both local circulation of the virus and potential exposure risks. In addition, it highlights the usefulness of sewage surveillance as an additional tool for an epidemiological investigation, especially in populations that include individuals with subclinical or asymptomatic infections that are precluded in case-based studies.</p></div>","PeriodicalId":563,"journal":{"name":"Food and Environmental Virology","volume":"16 3","pages":"363 - 379"},"PeriodicalIF":4.1,"publicationDate":"2024-06-24","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11422280/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141445191","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Antiviral Activity of Natural Compounds for Food Safety 天然化合物的抗病毒活性促进食品安全。
IF 4.1 2区 农林科学
Food and Environmental Virology Pub Date : 2024-06-17 DOI: 10.1007/s12560-024-09605-3
Irene Falcó, Walter Randazzo, Gloria Sánchez
{"title":"Antiviral Activity of Natural Compounds for Food Safety","authors":"Irene Falcó,&nbsp;Walter Randazzo,&nbsp;Gloria Sánchez","doi":"10.1007/s12560-024-09605-3","DOIUrl":"10.1007/s12560-024-09605-3","url":null,"abstract":"<div><p>Gastroenteritis and hepatitis are the most common illnesses resulting from the consumption of food contaminated with human enteric viruses. Several natural compounds have demonstrated antiviral activity against human enteric viruses, such as human norovirus and hepatitis A virus, while little information is available for hepatitis E virus. Many in-vitro studies have evaluated the efficacy of different natural compounds against human enteric viruses or their surrogates. However, only few studies have investigated their antiviral activity in food applications. Among them, green tea extract, grape seed extract and carrageenans have been extensively investigated as antiviral natural compounds to improve food safety. Indeed, these extracts have been studied as sanitizers on food-contact surfaces, in produce washing solutions, as active fractions in antiviral food-packaging materials, and in edible coatings. The most innovative applications of these antiviral natural extracts include the development of coatings to extend the shelf life of berries or their combination with established food technologies for improved processes. This review summarizes existing knowledge in the underexplored field of natural compounds for enhancing the safety of viral-contaminated foods and underscores the research needs to be covered in the near future.</p></div>","PeriodicalId":563,"journal":{"name":"Food and Environmental Virology","volume":"16 3","pages":"280 - 296"},"PeriodicalIF":4.1,"publicationDate":"2024-06-17","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11422275/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141330031","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Hepatitis E Virus RNA Detection in Liver and Muscle Tissues Sampled from Home Slaughtered Domestic Pigs in Central Italy 意大利中部家庭屠宰家猪肝脏和肌肉组织样本中的戊型肝炎病毒 RNA 检测。
IF 4.1 2区 农林科学
Food and Environmental Virology Pub Date : 2024-06-11 DOI: 10.1007/s12560-024-09606-2
Gianluigi Ferri, Giorgia Giantomassi, Daniele Tognetti, Alberto Olivastri, Alberto Vergara
{"title":"Hepatitis E Virus RNA Detection in Liver and Muscle Tissues Sampled from Home Slaughtered Domestic Pigs in Central Italy","authors":"Gianluigi Ferri,&nbsp;Giorgia Giantomassi,&nbsp;Daniele Tognetti,&nbsp;Alberto Olivastri,&nbsp;Alberto Vergara","doi":"10.1007/s12560-024-09606-2","DOIUrl":"10.1007/s12560-024-09606-2","url":null,"abstract":"<div><p>Hepatitis E virus is a worldwide emerging foodborne pathogen; raw or undercooked meats and liver pork products can cause infection through the orofecal route. In Central-Southern Italy, small traditional farming method, associated with the possibility of environmental sharing with wild species, can facilitate HEV diffusion and persistence. The aim of this study was to determine HEV genotype and subtype in Marche region from home slaughtered domestic pigs involved in small and traditional food chains. A total of 236 liver and muscle tissues and 6 pooled salami samples were screened. Laboratory workflow started with homogenization, followed by RNA extraction. Nested reverse transcription PCR and qRT-PCR were used to amplify specific parts of overlapping open reading frames belonging to the HEV genome. A total of 42/236 (17.79%) liver and 8/236 (3.39%) diaphragm specimens were positive; none of the pooled salami specimens showed positive HEV signal. The discovered HEV3c presented high nucleotide similarities with ones amplified from wild boar populations hunted in the same province. Extensive farming methods and environmental sharing with wild animal species support cross-infection infections, as observed in the present study. Although salami resulted negative for HEV RNA detection, the effects of food technologies on viral loads remain unclear. Therefore, further scientific investigations coupled with efficacious standardized laboratory procedures will be the next challenge.</p></div>","PeriodicalId":563,"journal":{"name":"Food and Environmental Virology","volume":"16 4","pages":"438 - 448"},"PeriodicalIF":4.1,"publicationDate":"2024-06-11","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://link.springer.com/content/pdf/10.1007/s12560-024-09606-2.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141305144","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Isolation and Identification of Postharvest Rot Pathogens in Citrus × tangelo and Their Potential Inhibition with Acidic Electrolyzed Water 柑橘 × 唐柚采后腐烂病病原体的分离和鉴定及其与酸性电解水的潜在抑制作用。
IF 4.1 2区 农林科学
Food and Environmental Virology Pub Date : 2024-06-06 DOI: 10.1007/s12560-024-09604-4
Ying Ji, Jieqiong Wang, Ye Liu, Shaoyan Liu, Xuanjing Jiang, Huaming Huang
{"title":"Isolation and Identification of Postharvest Rot Pathogens in Citrus × tangelo and Their Potential Inhibition with Acidic Electrolyzed Water","authors":"Ying Ji,&nbsp;Jieqiong Wang,&nbsp;Ye Liu,&nbsp;Shaoyan Liu,&nbsp;Xuanjing Jiang,&nbsp;Huaming Huang","doi":"10.1007/s12560-024-09604-4","DOIUrl":"10.1007/s12560-024-09604-4","url":null,"abstract":"<div><p>This study focused on the identification of rot-causing fungi in <i>Citrus</i> × <i>tangelo</i> (tangelo) with a particular emphasis on investigating the inhibitory effects of acidic electrolyzed water on the identified pathogens. The dominant strains responsible for postharvest decay were isolated from infected tangelo fruits and characterized through morphological observation, molecular identification, and pathogenicity detection. Two strains were isolated from postharvest diseased tangelo fruits, cultured and morphologically characterized, and had their gene fragments amplified using primers ITS1 and ITS4. The results revealed the rDNA-ITS sequence of two dominant pathogens were 100% homologous with those of <i>Penicillium citrinum</i> and <i>Aspergillus sydowii</i>. These isolated fungi were confirmed to induce tangelo disease, and subsequent re-isolation validated their consistency with the inoculum. Antifungal tests demonstrated that acidic electrolyzed water (AEW) exhibited a potent inhibitory effect on <i>P. citrinum</i> and <i>A. sydowii</i>, with EC<sub>50</sub> values of 85.4 μg/mL and 60.12 μg/mL, respectively. The inhibition zones of 150 μg/mL AEW to 2 kinds of pathogenic fungi were over 75 mm in diameter. Furthermore, treatment with AEW resulted in morphological changes such as bending and shrinking of the fungal hyphae surface. In addition, extracellular pH, conductivity, and absorbance at 260 nm of the fungi hypha significantly increased post-treatment with AEW. Pathogenic morphology and IST sequencing analysis confirmed <i>P. citrinum</i> and <i>A. sydowii</i> as the primary pathogenic fungi, with their growth effectively inhibited by AEW.</p></div>","PeriodicalId":563,"journal":{"name":"Food and Environmental Virology","volume":"16 3","pages":"409 - 421"},"PeriodicalIF":4.1,"publicationDate":"2024-06-06","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11422426/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141282607","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Urban Wastewater-Based Surveillance of SARS-CoV-2 Virus: A Two-Year Study Conducted in City of Patras, Greece 基于城市污水的 SARS-CoV-2 病毒监测:在希腊帕特雷市进行的为期两年的研究。
IF 4.1 2区 农林科学
Food and Environmental Virology Pub Date : 2024-06-03 DOI: 10.1007/s12560-024-09601-7
Zoi Anastopoulou, Zoi Kotsiri, Eleftheria Chorti-Tripsa, Rafail Fokas, Apostolos Vantarakis
{"title":"Urban Wastewater-Based Surveillance of SARS-CoV-2 Virus: A Two-Year Study Conducted in City of Patras, Greece","authors":"Zoi Anastopoulou,&nbsp;Zoi Kotsiri,&nbsp;Eleftheria Chorti-Tripsa,&nbsp;Rafail Fokas,&nbsp;Apostolos Vantarakis","doi":"10.1007/s12560-024-09601-7","DOIUrl":"10.1007/s12560-024-09601-7","url":null,"abstract":"<div><p>Wastewater-based epidemiology, during the COVID-19 pandemic years, has been applied as a complementary approach, worldwide, for tracking SARS-CoV-2 virus into the community and used as an early warning of the prevalence of COVID-19 infection. The present study presents the results of the 2-year surveillance project, in the city of Patras, Greece. The purpose of the study was to monitor SARS-CoV-2 and implement WBE as an early warning method of monitoring Public Health impact. The presence of SARS-CoV-2 was determined and quantified in 310 samples using RT-qPCR assays. For the years 2022 and 2023, 93.5% and 78.7% of samples were found positive, respectively. Comparison of detection methods have been conducted to select the method with the highest recovery of the viral load. A seasonal variation of the virus was recorded, showing a recession in summer months confirming the country's epidemiological data as indicated by positive correlation of wastewater viral load with registered cases of COVID-19 infections during these years (<i>p</i> &lt; 0.05) and moreover sealed with a significant negative correlation observed with Daily Average (<i>p</i> &lt; 0.01) and Daily Maximum Temperature (<i>p</i> &lt; 0.01). More research was carried out to elucidate a possible association of physicochemical characteristics of wastewater with viral load showing positive correlation with Chlorides (<i>p</i> &lt; 0.01) advocating possible increased use of chlorine-based disinfectants and Electrical Conductivity (<i>p</i> &lt; 0.01) indicates that wastewater during periods of increased infections is more heavily loaded with ions from chemical and biological pollutants. No correlation found with rainfall and physicochemical indicators, such as COD, BOD<sub>5</sub>, Total Phosphorus, Total Nitrogen, and Total Suspended Solids. According to the findings, WBE represents a useful tool in the management of epidemics based on an environmental approach and it can also shed light on the interacting parameters that capture Public Health since any infections that may lead to epidemics lead to a parallel change in the use of pharmaceuticals, antimicrobials, disinfectants, and microbial load in urban wastewater.</p></div>","PeriodicalId":563,"journal":{"name":"Food and Environmental Virology","volume":"16 3","pages":"398 - 408"},"PeriodicalIF":4.1,"publicationDate":"2024-06-03","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141199156","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
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