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Discerning Genes to Deliver Varieties: Enhancing Vegetative- and Reproductive-Stage Flooding Tolerance in Rice
IF 5.6 2区 农林科学
Rice Science Pub Date : 2025-03-01 DOI: 10.1016/j.rsci.2025.01.002
Sanchika Snehi , Kt Ravi Kiran , Sanket Rathi , Sameer Upadhyay , Suneetha Kota , Satish Kumar Sanwal , Bm Lokeshkumar , Arun Balasubramaniam , Nitish Ranjan Prakash , Pawan Kumar Singh
{"title":"Discerning Genes to Deliver Varieties: Enhancing Vegetative- and Reproductive-Stage Flooding Tolerance in Rice","authors":"Sanchika Snehi ,&nbsp;Kt Ravi Kiran ,&nbsp;Sanket Rathi ,&nbsp;Sameer Upadhyay ,&nbsp;Suneetha Kota ,&nbsp;Satish Kumar Sanwal ,&nbsp;Bm Lokeshkumar ,&nbsp;Arun Balasubramaniam ,&nbsp;Nitish Ranjan Prakash ,&nbsp;Pawan Kumar Singh","doi":"10.1016/j.rsci.2025.01.002","DOIUrl":"10.1016/j.rsci.2025.01.002","url":null,"abstract":"<div><div>Flooding in rice fields, especially in coastal regions and low-lying river basins, causes significant devastation to crops. Rice is highly susceptible to prolonged flooding, with a drastic decline in yields if inundation persists for more than 7 d, especially during the reproductive stage. Although the <em>SUB1</em> QTL, which confers tolerance to complete submergence during the vegetative stage, has been incorporated into breeding programs, the development of alternative sources is crucial. These alternatives would broaden the genetic base, mitigate the influence of the genomic background, and extend the efficacy of <em>SUB1</em> QTL to withstand longer submergence periods (up to approximately 21 d). Contemporary breeding strategies predominantly target submergence stress at the vegetative stage. However, stagnant flooding (partial submergence of vegetative parts) during the reproductive phase inflicts severe damage on the rice crop, leading to reduced yields, heightened susceptibility to pests and diseases, lodging, and inferior grain quality. The ability to tolerate stagnant flooding can be ascribed to several adaptive traits: accelerated aerenchyma formation, efficient underwater photosynthesis, reduced radial oxygen loss in submerged tissues, reinforced culms, enhanced reactive oxygen species scavenging within cells, dehydration tolerance post-flooding, and resistance to pests and diseases. A thorough investigation of the genetics underlying these traits, coupled with the integration of key alleles into elite genetic backgrounds, can significantly enhance food and income security in flood-prone rice-growing regions, particularly in coastal high-rainfall areas and low-lying river basins. This review aims to delineate an innovative breeding strategy that employs genomic, phenomic, and traditional breeding methodologies to develop rice varieties resilient to various dimensions of flooding stress at both the vegetative and reproductive stages.</div></div>","PeriodicalId":56069,"journal":{"name":"Rice Science","volume":"32 2","pages":"Pages 160-176"},"PeriodicalIF":5.6,"publicationDate":"2025-03-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143820803","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Regulation of Regeneration Rate to Enhance Ratoon Rice Production
IF 5.6 2区 农林科学
Rice Science Pub Date : 2025-03-01 DOI: 10.1016/j.rsci.2024.11.001
Nie Lixiao , Guo Xiayu , Wang Weiqin , Qi Yucheng , Ai Zhiyong , He Aibin
{"title":"Regulation of Regeneration Rate to Enhance Ratoon Rice Production","authors":"Nie Lixiao ,&nbsp;Guo Xiayu ,&nbsp;Wang Weiqin ,&nbsp;Qi Yucheng ,&nbsp;Ai Zhiyong ,&nbsp;He Aibin","doi":"10.1016/j.rsci.2024.11.001","DOIUrl":"10.1016/j.rsci.2024.11.001","url":null,"abstract":"<div><div>Ratoon rice (<em>Oryza sativa</em> L.) is a sustainable planting model, and its planting area has been increasing year by year. However, there is a lack of literature reviewing the measures and mechanisms to regulate the regeneration rate, as well as the challenges in the production of ratoon rice. This study explores the effects of different varieties, climatic conditions (light and temperature), and cultivation measures (fertilizer management, cropping system, harvest method, water management, and plant growth regulators) on the regeneration rate and grain yield of the ratoon season. It summarizes and analyzes the possible mechanisms that affect the germination of regenerated buds from the perspectives of material accumulation and transportation, hormone metabolism, and molecular mechanisms, and identifies main factors currently limiting the development of ratoon rice. A significant positive correlation between the regeneration rate and grain yield of the ratoon season was found, regulated by varieties, temperatures, light resources, and cultivation measures. Improving the regeneration rate can effectively increase the production of ratoon rice. Notably, rice varieties with high regeneration ability exhibit characteristics such as a suitable growth period, a developed root system, high single-stem weight, a relatively small ratio of grain number to green leaf area, and strong lodging resistance in the main season. Additionally, the germination of regenerated buds is regulated by the accumulation and transport of endogenous hormones (indole-3-acetic acid, gibberellins, and cytokinins), photoassimilates (non-structural carbohydrates), and reactive oxygen metabolism. To further demonstrate the grain yield potential of the ratoon season, improvements are needed in three key areas: the cultivation system of low-stubble ratoon rice, the development of specialized harvesters, and the breeding of rice varieties with high-temperature tolerance during the main crop and low-temperature tolerance during the ratoon crop.</div></div>","PeriodicalId":56069,"journal":{"name":"Rice Science","volume":"32 2","pages":"Pages 177-192"},"PeriodicalIF":5.6,"publicationDate":"2025-03-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143820804","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
OsCERK1 Interacts with OsHPP08 to Regulate Copper Uptake and Blast Resistance in Rice
IF 5.6 2区 农林科学
Rice Science Pub Date : 2025-03-01 DOI: 10.1016/j.rsci.2025.02.001
Ya Chen , Zhiquan Liu , Linyin Yang , Wu Fujie , Zijian Cao , Huanbin Shi , Jiehua Qiu , Yanjun Kou
{"title":"OsCERK1 Interacts with OsHPP08 to Regulate Copper Uptake and Blast Resistance in Rice","authors":"Ya Chen ,&nbsp;Zhiquan Liu ,&nbsp;Linyin Yang ,&nbsp;Wu Fujie ,&nbsp;Zijian Cao ,&nbsp;Huanbin Shi ,&nbsp;Jiehua Qiu ,&nbsp;Yanjun Kou","doi":"10.1016/j.rsci.2025.02.001","DOIUrl":"10.1016/j.rsci.2025.02.001","url":null,"abstract":"<div><div>The cell surface receptor chitin elicitor receptor kinase 1 (CERK1) is a well-known component of plant immunity. OsCERK1 is involved in regulating copper (Cu) uptake in rice, though the underlying mechanisms remain elusive. In this study, we identified proteins interacting with OsCERK1 and uncovered a novel heavy metal-associated domain-containing protein, OsHPP08. Our findings demonstrate that OsCERK1 phosphorylated and stabilized OsHPP08. Through structural analysis using AlphaFold, a yeast sensitivity assay of the Cu uptake-deficient yeast mutant, and Cu level measurements in <em>oshpp08</em> mutants and overexpression plants (<em>OsHPP08OE</em>), we revealed that OsHPP08 facilitated Cu uptake. Additionally, rice seedling infection assays demonstrated that OsHPP08 positively contributed to blast resistance, with both OsCERK1 and OsHPP08 being essential for Cu-modulated blast resistance. Further analyses suggested that OsCERK1 and OsHPP08 likely enhanced blast resistance by regulating the antioxidant system and increasing H<sub>2</sub>O<sub>2</sub> accumulation. In conclusion, OsCERK1 promoted Cu uptake by stabilizing OsHPP08, and together they contributed to Cu-modulated blast resistance, likely through the modulation of reactive oxygen species accumulation. These findings deepen our understanding of the intricate interplay between biotic and abiotic signals in rice.</div></div>","PeriodicalId":56069,"journal":{"name":"Rice Science","volume":"32 2","pages":"Pages 203-216"},"PeriodicalIF":5.6,"publicationDate":"2025-03-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143820428","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Efficient Production of Pyrrolnitrin by Optimizing Culture Medium and Blocking Competitive Secondary Metabolic Pathways in Pseudomonas protegens JP2-4390
IF 5.6 2区 农林科学
Rice Science Pub Date : 2025-03-01 DOI: 10.1016/j.rsci.2024.12.007
Shen Jiamin , Zhang Xinxin , Wang Yucong , Chen Guoqing , Feng Guozhong
{"title":"Efficient Production of Pyrrolnitrin by Optimizing Culture Medium and Blocking Competitive Secondary Metabolic Pathways in Pseudomonas protegens JP2-4390","authors":"Shen Jiamin ,&nbsp;Zhang Xinxin ,&nbsp;Wang Yucong ,&nbsp;Chen Guoqing ,&nbsp;Feng Guozhong","doi":"10.1016/j.rsci.2024.12.007","DOIUrl":"10.1016/j.rsci.2024.12.007","url":null,"abstract":"","PeriodicalId":56069,"journal":{"name":"Rice Science","volume":"32 2","pages":"Pages 156-159"},"PeriodicalIF":5.6,"publicationDate":"2025-03-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143820754","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Biofilmed-PGPR: Next-Generation Bioinoculant for Plant Growth Promotion in Rice under Changing Climate
IF 5.6 2区 农林科学
Rice Science Pub Date : 2025-01-01 DOI: 10.1016/j.rsci.2024.08.008
Jeberlin Prabina Bright , Hemant S. Maheshwari , Sugitha Thangappan , Kahkashan Perveen , Najat A. Bukhari , Debasis Mitra , Riyaz Sayyed , Andrea Mastinu
{"title":"Biofilmed-PGPR: Next-Generation Bioinoculant for Plant Growth Promotion in Rice under Changing Climate","authors":"Jeberlin Prabina Bright ,&nbsp;Hemant S. Maheshwari ,&nbsp;Sugitha Thangappan ,&nbsp;Kahkashan Perveen ,&nbsp;Najat A. Bukhari ,&nbsp;Debasis Mitra ,&nbsp;Riyaz Sayyed ,&nbsp;Andrea Mastinu","doi":"10.1016/j.rsci.2024.08.008","DOIUrl":"10.1016/j.rsci.2024.08.008","url":null,"abstract":"<div><div>The exopolysaccharide matrix of diazotrophic cyanobacteria was used to integrate phosphorus (P) and potassium (K) solubilizing bacteria, enhancing the survival of plant growth-promoting rhizobacteria, and ultimately the survival of bacteria in the rhizosphere for better plant growth. A new biofilm-based formulation comprising the diazotrophic cyanobacteria <em>Anabaena</em> AMP2, P-solubilizing <em>Bacillus megaterium</em> var<em>. phosphaticum</em> PB1, and K-solubilizing <em>Rhizobium pusense</em> KRBKKM1 was tested for efficacy in rice. The growth medium with half-strength BG-11 medium supplemented with 3% glucose showed best for biofilm formation under <em>in vitro</em> conditions. Analysis of the methanolic extract of the cyanobacterial- bacterial biofilm (CBB) showed the activity of antioxidants, such as 2-methoxy phenol and pentadecane, which are proven to improve plant-microbe interactions and plant growth, respectively. Treatment of rice seeds with CBB extract at 100 mL/kg or 200 mL/kg showed significant enhancement in germination rate and seedling length. Therefore, a pot culture experiment with the CBB formulations was carried out, and different growth and yield parameters were recorded. Principal component analysis showed that plant growth, yield, soil dehydrogenase activity, and soil chlorophyll content were positively correlated with rice plants amended with vermiculite-based CBB at 2 kg/hm<sup>2</sup> followed by a spray with aqueous CBB formulation at 5 mL/L at 15 and 30 d after rice transplanting grown with a 25% reduced level of nitrogen/phosphorus/potassium chemical fertilizers than the recommended dose. Further, Pearson correlation analysis showed that yield was positively correlated with soil dehydrogenase (<em>r</em> = 0.92**) and soil chlorophyll content (<em>r</em> = 0.96**). We concluded that CBB could be used as a novel biofilm-based bio-inoculant to increase rice productivity and crop fitness as a component in integrated nutrient management and sustainable organic farming strategies with reduced chemical fertilizers.</div></div>","PeriodicalId":56069,"journal":{"name":"Rice Science","volume":"32 1","pages":"Pages 94-106"},"PeriodicalIF":5.6,"publicationDate":"2025-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143378830","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Spireoside Controls Blast Disease by Disrupting Membrane Integrity of Magnaporthe oryzae
IF 5.6 2区 农林科学
Rice Science Pub Date : 2025-01-01 DOI: 10.1016/j.rsci.2024.10.005
Xu Liting , He Kaiwei , Guo Chunyu , Quan Cantao , Ma Yahuan, Zhang Wei, Ren Lifen, Wang Long, Song Li, Ouyang Qing, Yin Junjie, Zhu Xiaobo, Tang Yongyan, He Min, Chen Xuewei, Li Weitao
{"title":"Spireoside Controls Blast Disease by Disrupting Membrane Integrity of Magnaporthe oryzae","authors":"Xu Liting ,&nbsp;He Kaiwei ,&nbsp;Guo Chunyu ,&nbsp;Quan Cantao ,&nbsp;Ma Yahuan,&nbsp;Zhang Wei,&nbsp;Ren Lifen,&nbsp;Wang Long,&nbsp;Song Li,&nbsp;Ouyang Qing,&nbsp;Yin Junjie,&nbsp;Zhu Xiaobo,&nbsp;Tang Yongyan,&nbsp;He Min,&nbsp;Chen Xuewei,&nbsp;Li Weitao","doi":"10.1016/j.rsci.2024.10.005","DOIUrl":"10.1016/j.rsci.2024.10.005","url":null,"abstract":"<div><div>The application of fungicides is an effective strategy for controlling plant diseases. Among these agents, plant-derived antifungal metabolites are particularly promising due to their eco-friendly and sustainable nature. Plant secondary metabolites typically exhibit broad-spectrum antifungal activity without selective toxicity against pathogens. However, only a small fraction of antifungal metabolites have been identified from the tens of thousands of known plant secondary metabolites. In this study, we conducted a metabolomic analysis on both blast-resistant (Digu) and -susceptible (Lijiangxintuanheigu) rice varieties to uncover novel metabolites that enhance blast resistance. We found that 24 and 48 h post-inoculation with <em>Magnaporthe oryzae</em> were critical time points for metabolomic profiling, based on the infected status of <em>M. oryzae</em> in rice and the observed differences in shikimate accumulation between the two varieties. Following metabolomic analysis, we identified nine flavonoids that were differentially accumulated and are considered potential candidates for disease control. Among these, apigenin-7-glucoside, rhamnetin, and spireoside were found to be effective in controlling blast disease, with spireoside demonstrating the most pronounced efficacy. We discovered that spireoside controlled blast disease by inhibiting both spore germination and appressorium formation in <em>M. oryzae</em>, primarily through disrupting cell membrane integrity. However, spireoside did not induce rice immunity. Furthermore, spireoside was also effective in controlling sheath blight disease. Thus, spireoside shows considerable promise as a candidate for the development of a fungicide for controlling plant diseases.</div></div>","PeriodicalId":56069,"journal":{"name":"Rice Science","volume":"32 1","pages":"Pages 107-117"},"PeriodicalIF":5.6,"publicationDate":"2025-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143378640","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Effect of Germinated Brown Rice Supplementation on Prediabetes Markers: A 120-Day Dietary Intervention Study in Selected Female Groups
IF 5.6 2区 农林科学
Rice Science Pub Date : 2025-01-01 DOI: 10.1016/j.rsci.2024.08.006
Hemalatha Ganapathyswamy , Thirukkumar Subramani , Kanmani Kalaivanan , Adiyaman Pannerselvam , Amutha Sundararajan
{"title":"Effect of Germinated Brown Rice Supplementation on Prediabetes Markers: A 120-Day Dietary Intervention Study in Selected Female Groups","authors":"Hemalatha Ganapathyswamy ,&nbsp;Thirukkumar Subramani ,&nbsp;Kanmani Kalaivanan ,&nbsp;Adiyaman Pannerselvam ,&nbsp;Amutha Sundararajan","doi":"10.1016/j.rsci.2024.08.006","DOIUrl":"10.1016/j.rsci.2024.08.006","url":null,"abstract":"","PeriodicalId":56069,"journal":{"name":"Rice Science","volume":"32 1","pages":"Pages 11-14"},"PeriodicalIF":5.6,"publicationDate":"2025-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143378644","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Understanding Investigational Perspective of Antioxidant and Antibacterial Properties of Rice
IF 5.6 2区 农林科学
Rice Science Pub Date : 2025-01-01 DOI: 10.1016/j.rsci.2024.10.004
Intan Farahanah , Shariza Sahudin , Hannis Fadzillah Mohsin , Siti Alwani Ariffin , Liyana Dhamirah Aminuddin
{"title":"Understanding Investigational Perspective of Antioxidant and Antibacterial Properties of Rice","authors":"Intan Farahanah ,&nbsp;Shariza Sahudin ,&nbsp;Hannis Fadzillah Mohsin ,&nbsp;Siti Alwani Ariffin ,&nbsp;Liyana Dhamirah Aminuddin","doi":"10.1016/j.rsci.2024.10.004","DOIUrl":"10.1016/j.rsci.2024.10.004","url":null,"abstract":"<div><div>Whole-grain rice has gained significant attention for its potential health benefits, particularly because of its antioxidant and antibacterial properties. Despite this growing interest, there remains a pressing need for a comprehensive evaluation of the methods used to analyze these bioactive compounds, considering the diversity of rice types and the influence of environmental factors. This review aims to provide an in-depth overview of recent analytical methods, particularly those employed over the last five years, to assess the antioxidant and antibacterial properties of rice. It focuses on commonly used antioxidant assays, such as the 2,2-diphenyl-1-picrylhydrazyl (DPPH) radical scavenging activity assay, which encompasses both single electron transfer and hydrogen atom transfer mechanisms. Other antioxidant assays are also discussed, alongside methods used to evaluate antibacterial properties, including disc diffusion, well diffusion, broth or agar dilution, and advanced techniques such as flow cytofluorometric and bioluminescent assays. The review further explores the bacterial strains most frequently studied, including <em>Bacillus cereus</em>, <em>Listeria monocytogenes</em>, <em>Escherichia coli</em>, and <em>Salmonella</em> species. It highlights the key techniques and parameters employed to ascertain and quantify the antioxidant and antibacterial potential of rice, while critically analysing the strengths and limitations of these approaches. By synthesizing current methods and offering insights into their application, this review can be served as a guide for future research aimed at standardizing and improving the assessment of rice’s bioactive properties, paving the way for broader scientific and practical applications.</div></div>","PeriodicalId":56069,"journal":{"name":"Rice Science","volume":"32 1","pages":"Pages 15-31"},"PeriodicalIF":5.6,"publicationDate":"2025-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143378824","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Disruption of Energy Metabolism and Reactive Oxygen Species Homeostasis in Honglian Type-Cytoplasmic Male Sterility (HL-CMS) Rice Pollen
IF 5.6 2区 农林科学
Rice Science Pub Date : 2025-01-01 DOI: 10.1016/j.rsci.2024.10.003
Wang Mingyue, Zhao Weibo, Feng Xiaoya, Chen Yi, Li Junhao, Fu Jinmei, Yan Yingchun, Chu Zhaohui, Huang Wenchao
{"title":"Disruption of Energy Metabolism and Reactive Oxygen Species Homeostasis in Honglian Type-Cytoplasmic Male Sterility (HL-CMS) Rice Pollen","authors":"Wang Mingyue,&nbsp;Zhao Weibo,&nbsp;Feng Xiaoya,&nbsp;Chen Yi,&nbsp;Li Junhao,&nbsp;Fu Jinmei,&nbsp;Yan Yingchun,&nbsp;Chu Zhaohui,&nbsp;Huang Wenchao","doi":"10.1016/j.rsci.2024.10.003","DOIUrl":"10.1016/j.rsci.2024.10.003","url":null,"abstract":"<div><div>Honglian type-cytoplasmic male sterility (HL-CMS) is caused by the inter-communication between the nucleus and mitochondria. However, the mechanisms by which sterility genes regulate metabolic alterations and changes in mitochondrial morphology in the pollen of HL-CMS remain unclear. In this study, we compared the morphological differences between the pollen of the male sterile line YA and the near-isogenic line NIL-Rf6 using hematoxylin-eosin staining and 4ʹ,6-diamidino-2-phenylindole (DAPI) staining. HL-CMS is characterized by gametophytic sterility, where the aborted pollen grains are empty, and the tapetal layer remains intact. Transmission electron microscopy was employed to observe mitochondrial morphological changes at the microspore stage, revealing significant mitochondrial alterations, characterized by the formation of 'large spherical mitochondria', occurred at the binucleate stage in the YA line. Additionally, metabolomics analysis revealed decreased levels of metabolites associated with the carbohydrate and flavonoid pathways. Notably, the decrease in flavonoids was found to contribute to an elevation in reactive oxygen species (ROS) levels. Therefore, we propose a model in which rice fertility is modulated by the levels of pollen carbohydrates and flavonoid metabolites, with impaired mitochondrial energy production and reduced flavonoid biosynthesis as the main causes of ROS accumulation and pollen abortion in rice.</div></div>","PeriodicalId":56069,"journal":{"name":"Rice Science","volume":"32 1","pages":"Pages 81-93"},"PeriodicalIF":5.6,"publicationDate":"2025-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143378829","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Mixture of Bacillus Amyloliquefaciens and Bacillus Pumilus Modulates Community Structures of Rice Rhizosphere Soil to Suppress Rice Seedling Blight
IF 5.6 2区 农林科学
Rice Science Pub Date : 2025-01-01 DOI: 10.1016/j.rsci.2024.09.001
Jiang Nan , Qiu Jiehua , Tian Dagang , Shi Huanbin , Liu Zhiquan , Wen Hui , Xie Shuwei , Chen Huizhe , Wu Meng , Kou Yanjun
{"title":"Mixture of Bacillus Amyloliquefaciens and Bacillus Pumilus Modulates Community Structures of Rice Rhizosphere Soil to Suppress Rice Seedling Blight","authors":"Jiang Nan ,&nbsp;Qiu Jiehua ,&nbsp;Tian Dagang ,&nbsp;Shi Huanbin ,&nbsp;Liu Zhiquan ,&nbsp;Wen Hui ,&nbsp;Xie Shuwei ,&nbsp;Chen Huizhe ,&nbsp;Wu Meng ,&nbsp;Kou Yanjun","doi":"10.1016/j.rsci.2024.09.001","DOIUrl":"10.1016/j.rsci.2024.09.001","url":null,"abstract":"<div><div>Rice seedling blight, caused by various fungi, including <em>Fusarium oxysporum</em>, poses a severe threat to rice production. As awareness grows regarding the environmental and safety hazards associated with the application of fungicides for managing rice seedling blight, there has been a shift in focus towards biological control agents. In this study, we isolated biocontrol bacteria from paddy fields that significantly inhibited the growth of <em>F. oxysporum in vitro</em> and identified the strains as <em>Bacillus amyloliquefaciens</em> T40 and <em>Bacillus pumilus</em> T208. Additionally, our findings indicated that the combined application of these <em>Bacillus</em> strains in soil was more effective in reducing the incidence of rice seedling blight than their individual use. Analysis of 16S and internal transcribed spacer rRNA gene sequencing data revealed that the mixture of the T40 and T208 strains exhibited the lowest average clustering coefficients, which were negatively correlated with the biomass of <em>F. oxysporum</em>-inoculated rice seedlings. Furthermore, this mixture led to higher stochastic assembly (average |βNTI| &lt; 2) and reduced selection pressures on rice rhizosphere bacteria compared with individual strain applications. The mixture of the T40 and T208 strains also significantly increased the expression of defense-related genes. In conclusion, the mixture of the T40 and T208 strains effectively modulates microbial community structures, enhances microbial network stability, and boosts the resistance against rice seedling blight. Our study supports the development and utilization of biological resources for crop protection.</div></div>","PeriodicalId":56069,"journal":{"name":"Rice Science","volume":"32 1","pages":"Pages 118-130"},"PeriodicalIF":5.6,"publicationDate":"2025-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143378641","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
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