Topics in Current Chemistry最新文献

{"title":"High-performance biosensing based on autonomous enzyme-free DNA circuits","authors":"Hong Wang, Huimin Wang, Itamar Willner, Fuan Wang","doi":"10.1007/s41061-020-0284-x","DOIUrl":"https://doi.org/10.1007/s41061-020-0284-x","url":null,"abstract":"","PeriodicalId":54344,"journal":{"name":"Topics in Current Chemistry","volume":"378 1","pages":""},"PeriodicalIF":8.6,"publicationDate":"2020-02-03","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1007/s41061-020-0284-x","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"4116011","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"DNA-Driven Nanoparticle Assemblies for Biosensing and Bioimaging","authors":"Yuan Zhao,&nbsp;Lixia Shi,&nbsp;Hua Kuang,&nbsp;Chuanlai Xu","doi":"10.1007/s41061-020-0282-z","DOIUrl":"https://doi.org/10.1007/s41061-020-0282-z","url":null,"abstract":"<p>DNA molecules with superior flexibility, affinity and programmability have garnered considerable attention for the controllable assembly of nanoparticles (NPs). By controlling the density, length and sequences of DNA on NPs, the configuration of NP assemblies can be rationally designed. The specific recognition of DNA enables changes to be made to the spatial structures of NP assemblies, resulting in differences in tailorable optical signals. Comprehensive information on the fabrication of DNA-driven NP assemblies would be beneficial for their application in biosensing and bioimaging. This review analyzes the progress of DNA-driven NP assemblies, and discusses the tunable configurations determined by the structural parameters of DNA skeletons. The collective optical properties, such as chirality, fluorescence and surface enhanced Raman resonance (SERS), etc., of DNA-driven NP assemblies are explored, and engineered tailorable optical properties of these spatial structures are achieved. We discuss the development of DNA-directed NP assemblies for the quantification of DNA, toxins, and heavy metal ions, and demonstrate their potential application in the biosensing and bioimaging of tumor markers, RNA, living metal ions and phototherapeutics. We hihghlight possible challenges in the development of DNA-driven NP assemblies, and further direct potential prospects in the practical applications of macroscopical materials and photonic devices.</p>","PeriodicalId":54344,"journal":{"name":"Topics in Current Chemistry","volume":"378 1","pages":""},"PeriodicalIF":8.6,"publicationDate":"2020-02-03","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1007/s41061-020-0282-z","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"4117275","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Metal–Organic Frameworks Towards Desulfurization of Fuels","authors":"Leiduan Hao,&nbsp;Matthew J. Hurlock,&nbsp;Guodong Ding,&nbsp;Qiang Zhang","doi":"10.1007/s41061-020-0280-1","DOIUrl":"https://doi.org/10.1007/s41061-020-0280-1","url":null,"abstract":"<p>Petroleum is an essential source of energy for our daily life. However, crude oil contains various kinds of sulfur-containing compounds that will form sulfur oxides upon combustion and cause severe environmental problems. To reduce the environmental impact of petroleum energy, the desulfurization of fuels is necessary. Metal–organic frameworks (MOFs), an emerging class of porous materials, have shown great potential in a variety of applications. In this review, we summarize the use of MOFs in the desulfurization of fuels. The scope of this review includes MOFs and MOF-derived materials that have been applied in oxidative desulfurization and adsorptive desulfurization processes. We aim to provide an overview of the progress of MOFs in fuel desulfurization as well as shed light on the development of superior MOF-based materials in the field of desulfurization.</p>","PeriodicalId":54344,"journal":{"name":"Topics in Current Chemistry","volume":"378 1","pages":""},"PeriodicalIF":8.6,"publicationDate":"2020-01-29","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1007/s41061-020-0280-1","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"5118998","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Carbon Nanotubes in Biomedicine","authors":"Viviana Negri,&nbsp;Jesús Pacheco-Torres,&nbsp;Daniel Calle,&nbsp;Pilar López-Larrubia","doi":"10.1007/s41061-019-0278-8","DOIUrl":"https://doi.org/10.1007/s41061-019-0278-8","url":null,"abstract":"<p>Nowadays, biomaterials have become a crucial element in numerous biomedical, preclinical, and clinical applications. The use of nanoparticles entails a great potential in these fields mainly because of the high ratio of surface atoms that modify the physicochemical properties and increases the chemical reactivity. Among them, carbon nanotubes (CNTs) have emerged as a powerful tool to improve biomedical approaches in the management of numerous diseases. CNTs have an excellent ability to penetrate cell membranes, and the <i>sp</i>² hybridization of all carbons enables their functionalization with almost every biomolecule or compound, allowing them to target cells and deliver drugs under the appropriate environmental stimuli. Besides, in the new promising field of artificial biomaterial generation, nanotubes are studied as the load in nanocomposite materials, improving their mechanical and electrical properties, or even for direct use as scaffolds in body tissue manufacturing. Nevertheless, despite their beneficial contributions, some major concerns need to be solved to boost the clinical development of CNTs, including poor solubility in water, low biodegradability and dispersivity, and toxicity problems associated with CNTs’ interaction with biomolecules in tissues and organs, including the possible effects in the proteome and genome. This review performs a wide literature analysis to present the main and latest advances in the optimal design and characterization of carbon nanotubes with biomedical applications, and their capacities in different areas of preclinical research.</p>","PeriodicalId":54344,"journal":{"name":"Topics in Current Chemistry","volume":"378 1","pages":""},"PeriodicalIF":8.6,"publicationDate":"2020-01-14","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1007/s41061-019-0278-8","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"4571581","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Insights into the Gas Adsorption Mechanisms in Metal–Organic Frameworks from Classical Molecular Simulations","authors":"Tony Pham,&nbsp;Brian Space","doi":"10.1007/s41061-019-0276-x","DOIUrl":"https://doi.org/10.1007/s41061-019-0276-x","url":null,"abstract":"<p>Classical molecular simulations can provide significant insights into the gas adsorption mechanisms and binding sites in various metal–organic frameworks (MOFs). These simulations involve assessing the interactions between the MOF and an adsorbate molecule by calculating the potential energy of the MOF–adsorbate system using a functional form that generally includes nonbonded interaction terms, such as the repulsion/dispersion and permanent electrostatic energies. Grand canonical Monte Carlo (GCMC) is the most widely used classical method that is carried out to simulate gas adsorption and separation in MOFs and identify the favorable adsorbate binding sites. In this review, we provide an overview of the GCMC methods that are normally utilized to perform these simulations. We also describe how a typical force field is developed for the MOF, which is required to compute the classical potential energy of the system. Furthermore, we highlight some of the common analysis techniques that have been used to determine the locations of the preferential binding sites in these materials. We also review some of the early classical molecular simulation studies that have contributed to our working understanding of the gas adsorption mechanisms in MOFs. Finally, we show that the implementation of classical polarization for simulations in MOFs can be necessary for the accurate modeling of an adsorbate in these materials, particularly those that contain open-metal sites. In general, molecular simulations can provide a great complement to experimental studies by helping to rationalize the favorable MOF–adsorbate interactions and the mechanism of gas adsorption.</p>","PeriodicalId":54344,"journal":{"name":"Topics in Current Chemistry","volume":"378 1","pages":""},"PeriodicalIF":8.6,"publicationDate":"2020-01-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1007/s41061-019-0276-x","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"4539084","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"DNA–Iron Oxide Nanoparticles Conjugates: Functional Magnetic Nanoplatforms in Biomedical Applications","authors":"José Raúl Sosa-Acosta,&nbsp;Claudia Iriarte-Mesa,&nbsp;Greter A. Ortega,&nbsp;Alicia M. Díaz-García","doi":"10.1007/s41061-019-0277-9","DOIUrl":"https://doi.org/10.1007/s41061-019-0277-9","url":null,"abstract":"<p>The use of magnetic nanoparticles (MNPs), such as iron oxide nanoparticles (IONPs), in biomedicine is considered to be a valuable alternative to the more traditional materials due to their chemical stability, cost-effectiveness, surface functionalization, and the possibility to selectively attach and transport targeted species to the desired location under a magnetic field. One of the many main applications of MNPs is DNA separation, which enables genetic material manipulation; consequently, MNPs are used in numerous biotechnological methods, such as gene transfection and molecular recognition systems. In addition, the interaction between the surfaces of MNPs and DNA molecules and the magnetic nature of the resulting composite have facilitated the development of safe and effective gene delivery vectors to treat significant diseases, such as cancer and neurological disorders. Furthermore, the special recognition properties of nucleic acids based on the binding capacity of DNA and the magnetic behavior of the nanoparticles allowing magnetic separation and concentration of analytes have led to the development of biosensors and diagnostic assays; however, both of these applications face important challenges in terms of the improvement of selective nanocarriers and biosensing capacity. In this review, we discuss some aspects of the properties and surface functionalization of MNPs, the interactions between DNA and IONPs, the preparation of DNA nanoplatforms and their biotechnological applications, such as the magnetic separation of DNA, magnetofection, preparation of DNA vaccines, and molecular recognition tools.</p>","PeriodicalId":54344,"journal":{"name":"Topics in Current Chemistry","volume":"378 1","pages":""},"PeriodicalIF":8.6,"publicationDate":"2020-01-10","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1007/s41061-019-0277-9","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"4420694","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"MOFs-Based Catalysts Supported Chemical Conversion of CO2","authors":"Ying Shi,&nbsp;Shengli Hou,&nbsp;Xiaohang Qiu,&nbsp;Bin Zhao","doi":"10.1007/s41061-019-0269-9","DOIUrl":"https://doi.org/10.1007/s41061-019-0269-9","url":null,"abstract":"<p>The dramatic increase in atmospheric carbon dioxide (CO₂) concentrations has attracted human attention and many strategies about converting CO₂ into high-value chemicals have been put forward. Metal–organic frameworks (MOFs), as a class of versatile materials, have been widely used in CO₂ capture and chemical conversion, due to their unique porosity, multiple active centers and good stability and recyclability. Herein, we focused on the processes of chemical conversion of CO₂ by MOFs-based catalysts, including the coupling reactions of epoxides, aziridines or alkyne molecules, CO₂ hydrogenation, and other CO₂ conversion reactions. The synthesized methods and high catalytic activity of MOFs-based materials were also analyzed systematically. Finally, a brief perspective on feasible strategies is presented to improve the catalytic activity of novel MOFs-based materials and explore the new CO₂ conversion reactions.</p>","PeriodicalId":54344,"journal":{"name":"Topics in Current Chemistry","volume":"378 1","pages":""},"PeriodicalIF":8.6,"publicationDate":"2020-01-06","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1007/s41061-019-0269-9","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"4251341","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"DNA Strand Displacement Reaction: A Powerful Tool for Discriminating Single Nucleotide Variants","authors":"Weiyang Tang,&nbsp;Weiye Zhong,&nbsp;Yun Tan,&nbsp;Guan A. Wang,&nbsp;Feng Li,&nbsp;Yizhen Liu","doi":"10.1007/s41061-019-0274-z","DOIUrl":"https://doi.org/10.1007/s41061-019-0274-z","url":null,"abstract":"<p>Single-nucleotide variants (SNVs) that are strongly associated with many genetic diseases and tumors are important both biologically and clinically. Detection of SNVs holds great potential for disease diagnosis and prognosis. Recent advances in DNA nanotechnology have offered numerous principles and strategies amenable to the detection and quantification of SNVs with high sensitivity, specificity, and programmability. In this review, we will focus our discussion on emerging techniques making use of DNA strand displacement, a basic building block in dynamic DNA nanotechnology. Based on their operation principles, we classify current SNV detection methods into three main categories, including strategies using toehold-mediated strand displacement reactions, toehold-exchange reactions, and enzyme-mediated strand displacement reactions. These detection methods discriminate SNVs from their wild-type counterparts through subtle differences in thermodynamics, kinetics, or response to enzymatic manipulation. The remarkable programmability of dynamic DNA nanotechnology also allows the predictable design and flexible operation of diverse strand displacement probes and/or primers. Here, we offer a systematic survey of current strategies, with an emphasis on the molecular mechanisms and their applicability to in vitro diagnostics.</p>","PeriodicalId":54344,"journal":{"name":"Topics in Current Chemistry","volume":"378 1","pages":""},"PeriodicalIF":8.6,"publicationDate":"2020-01-02","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1007/s41061-019-0274-z","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"4080796","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Recent Progress in Asymmetric Relay Catalysis of Metal Complex with Chiral Phosphoric Acid","authors":"Pu-Sheng Wang,&nbsp;Dian-Feng Chen,&nbsp;Liu-Zhu Gong","doi":"10.1007/s41061-019-0263-2","DOIUrl":"https://doi.org/10.1007/s41061-019-0263-2","url":null,"abstract":"<p>Asymmetric metal/organo relay catalysis, utilizing a metal complex and a chiral organocatalyst in a one-pot cascade reaction, is aimed to sequentially impart activation on multiple steps by distinct catalysts. Such a catalysis merges the advantages of both metal catalysis and organocatalysis, providing step-economy, and, more importantly, the potential to achieve inaccessible reactivity by a single catalyst. Chiral phosphoric acids are among the most robust organocatalysts, rendering a broad range of enantioselective bond-forming reactions. The combination of metal complexes and chiral phosphoric acids in a single vessel has been well documented. In particular, the asymmetric relay catalysis of metal complex with chiral phosphoric acid has grown rapidly since 2008. Several excellent reviews have been published to cover almost all examples in this area from 2008 to early 2014; therefore, in this chapter, we will mainly highlight progress from 2014 to mid-2019.</p>","PeriodicalId":54344,"journal":{"name":"Topics in Current Chemistry","volume":"378 1","pages":""},"PeriodicalIF":8.6,"publicationDate":"2019-12-27","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1007/s41061-019-0263-2","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"5037275","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Limitations and Prospects for Wastewater Treatment by UV and Visible-Light-Active Heterogeneous Photocatalysis: A Critical Review","authors":"Giuseppina Iervolino,&nbsp;Ian Zammit,&nbsp;Vincenzo Vaiano,&nbsp;Luigi Rizzo","doi":"10.1007/s41061-019-0272-1","DOIUrl":"https://doi.org/10.1007/s41061-019-0272-1","url":null,"abstract":"<p>Heterogeneous photocatalysis (HPC) has been widely investigated in recent decades for the removal of a number of contaminants from aqueous matrices, but its application in real wastewater treatment at full scale is still scarce. Indeed, process and technological limitations have made HPC uncompetitive with respect to consolidated processes/technologies so far. In this manuscript, these issues are critically discussed and reviewed with the aim of providing the reader with a realistic picture of the prospective application of HPC in wastewater treatment. Accordingly, consolidated and new photocatalysts (among which the visible active ones are attracting increasing interest among the scientific community), along with preparation methods, are reviewed to understand whether, with increased process efficiency, these methods can be realistically and competitively developed at industrial scale. Precipitation is considered as an attractive method for photocatalyst preparation at the industrial scale; sol–gel and ultrasound may be feasible only if no expensive metal precursor is used, while hydrothermal and solution combustion synthesis are expected to be difficult (expensive) to scale up. The application of HPC in urban and industrial wastewater treatment and possible energy recovery by hydrogen production are discussed in terms of current limitations and future prospects. Despite the fact that HPC has been studied for the removal of pollutants in aqueous matrices for two decades, its use in wastewater treatment is still at a “technological research” stage. In order to accelerate the adoption of HPC at full scale, it is advisable to focus on investigations under real conditions and on developing/improving pilot-scale reactors to better investigate scale-up conditions and the potential to successfully address specific challenges in wastewater treatment through HPC. In realistic terms, the prospective use of HPC is more likely as a tertiary treatment of wastewater, particularly if more stringent regulations come into force, than as pretreatment for industrial wastewater to improve biodegradability.</p>","PeriodicalId":54344,"journal":{"name":"Topics in Current Chemistry","volume":"378 1","pages":""},"PeriodicalIF":8.6,"publicationDate":"2019-12-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1007/s41061-019-0272-1","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"4643375","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}