The Plant CellPub Date : 2026-04-16DOI: 10.1093/plcell/koag111
Julie Robinson
{"title":"Setting the stage: The sleek cell-cycle machinery of the liverwort Marchantia polymorpha.","authors":"Julie Robinson","doi":"10.1093/plcell/koag111","DOIUrl":"https://doi.org/10.1093/plcell/koag111","url":null,"abstract":"","PeriodicalId":501012,"journal":{"name":"The Plant Cell","volume":"103 1","pages":""},"PeriodicalIF":0.0,"publicationDate":"2026-04-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"147684984","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
The Plant CellPub Date : 2026-04-16DOI: 10.1093/plcell/koag113
Bingyan Hu,Maria Ada Prusicki,Katharina Stahlmann,Yingqi Wang,Arp Schnittger
{"title":"A cytological framework of female meiosis in Arabidopsis.","authors":"Bingyan Hu,Maria Ada Prusicki,Katharina Stahlmann,Yingqi Wang,Arp Schnittger","doi":"10.1093/plcell/koag113","DOIUrl":"https://doi.org/10.1093/plcell/koag113","url":null,"abstract":"Female and male meiosis often differ in many aspects, such as their duration and the frequency as well as the positioning of crossovers. However, studying female meiosis is often very challenging and thus, much less is known about female versus male meiosis in many species including plants, where meiosis occurs deep within the ovules. To approach this gap, we developed a live-cell imaging system for female meiocytes in Arabidopsis (Arabidopsis thaliana) in this study. This allowed us to obtain a temporally resolved cytological framework of female meiosis in the wild type that serves as a guiding system for future studies. Subsequently, we have applied this imaging system here to study mutants in cyclin-dependent kinase inhibitors, in which a designated female meiocyte undergoes several mitotic divisions before entering meiosis. This mutant context enabled us to address when a meiocyte is committed to meiosis, a key question during reproductive development and in particular for the analysis of apomictic species in which meiosis is skipped.","PeriodicalId":501012,"journal":{"name":"The Plant Cell","volume":"242 1","pages":""},"PeriodicalIF":0.0,"publicationDate":"2026-04-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"147695072","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
The Plant CellPub Date : 2026-04-16DOI: 10.1093/plcell/koag114
J C Chia,X Liu,S Dey,J Yan,Y Niu,O K Vatamaniuk
{"title":"CITF1 interacts with FIT and regulates copper-iron crosstalk in Arabidopsis.","authors":"J C Chia,X Liu,S Dey,J Yan,Y Niu,O K Vatamaniuk","doi":"10.1093/plcell/koag114","DOIUrl":"https://doi.org/10.1093/plcell/koag114","url":null,"abstract":"Iron (Fe) and copper (Cu) are essential yet potentially toxic metals with interconnected metabolic pathways; however, the mechanisms underlying Fe-Cu crosstalk remain poorly defined. Here, we show that CITF1 (COPPER DEFICIENCY INDUCED TRANSCRIPTION FACTOR 1), a Cu homeostasis regulator in Arabidopsis thaliana, physically interacts with FIT (FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR), the central Fe homeostasis regulator, forming a nutrient-responsive transcriptional module. Under Cu deficiency, the CITF1-FIT complex accumulates and promotes expression of the Cu uptake genes COPT2 (COPPER TRANSPORTER 2), FRO4 (FERRIC REDUCTION OXIDASE 4), and FRO5 (FERRIC REDUCTION OXIDASE 5). Proteasome-dependent degradation regulates CITF1 and FIT stability, with Cu deficiency delaying their turnover in a CITF1-dependent manner. Under Fe deficiency, CITF1 expression is downregulated, allowing FIT to interact with bHLH38/39/100/101 partners and activate Fe uptake genes, as CITF1 disrupts these interactions. Thus, CITF1 negatively regulates Fe acquisition. Consistent with this, citf1-1 and citf1-2 mutants show reduced sensitivity to Fe deficiency. Under Cu deficiency, the citf1-2 and fit-2 mutants have additive effects and under Fe deficiency, the double mutant shows partial suppression of the fit-2 slow growth phenotype, supporting the positive and negative roles of CITF1 in Cu and Fe homeostasis, respectively. Complete loss of CITF1 function in the homozygous citf1-1 fit-2 double mutant causes embryo lethality, revealing roles for CITF1 and FIT in embryo development. These findings establish CITF1 as a nutrient-responsive regulator of Cu/Fe crosstalk, functioning through interactions with FIT to prioritize Cu or Fe acquisition and balance micronutrient homeostasis.","PeriodicalId":501012,"journal":{"name":"The Plant Cell","volume":"8 1","pages":""},"PeriodicalIF":0.0,"publicationDate":"2026-04-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"147695073","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
The Plant CellPub Date : 2026-04-16DOI: 10.1093/plcell/koag115
Feng Qin,Wolfgang Busch
{"title":"Growth versus Decline: Root Aging and Plant Performance.","authors":"Feng Qin,Wolfgang Busch","doi":"10.1093/plcell/koag115","DOIUrl":"https://doi.org/10.1093/plcell/koag115","url":null,"abstract":"Roots play a central role in plant growth, survival, and fitness, and are increasingly recognized as key determinants of crop yield and sustainability traits, including soil carbon sequestration. While extensive research has focused on the regulatory mechanisms of root growth and development, the process of root aging and its impact on root growth has received considerably less attention. This is in part due to the technical challenges of sampling and analyzing older roots. However, growing evidence indicates that root growth often declines with age. In this review, we synthesize current knowledge on the molecular and physiological mechanisms regulating root growth, and mechanisms and effects of root aging, providing a conceptual bridge between the two processes. Moreover, we discuss potential genetic and synthetic biology approaches and strategies to delay root aging or reactivate growth in old roots, and how such interventions could ultimately enhance crop productivity and support plant-based strategies for climate change mitigation.","PeriodicalId":501012,"journal":{"name":"The Plant Cell","volume":"61 1","pages":""},"PeriodicalIF":0.0,"publicationDate":"2026-04-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"147695074","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"The LARGE3-OsHDT1 complex controls rice grain size and weight by modulating histone H4 acetylation of OsMKKK10.","authors":"Guozheng Zhang,Junmin Wang,Xiaohui Jing,Sha Tang,Leiying Zheng,Linlin Zhang,Baolan Zhang,Ran Xu,Penggen Duan,Luojiang Huang,Ke Huang,Ying Gao,Limin Zhang,Jianqin Hao,Xianmin Diao,Yunhai Li","doi":"10.1093/plcell/koag109","DOIUrl":"https://doi.org/10.1093/plcell/koag109","url":null,"abstract":"Grain size is an important yield trait in cereal crops and understanding the mechanisms that control grain size is essential for precise breeding and improving cereal crop yields. Epigenetics plays a crucial role in plant growth and development, but how it is involved in grain size regulation remains largely unclear. Here we report that the histone-binding protein LARGE3 associates with the histone deacetylase OsHDT1 (HD-tuins 1) to control grain length by influencing histone H4 acetylation in rice (Oryza sativa). The large3 mutants form large and heavy grains because of increased cell proliferation. LARGE3 physically interacts with OsHDT1 to negatively regulate grain length. LARGE3 and OsHDT1 repress the expression of an important grain size gene OsMKKK10 by decreasing its histone H4 acetylation level and increasing its nucleosome density. Importantly, genome editing of LARGE3 homolog in foxtail millet (Setaria italica) causes large grains and increased grain yield. These findings reveal a molecular mechanism for LARGE3-OsHDT1 mediated epigenetic modulation of grain length by regulating histone H4 acetylation of OsMKKK10, suggesting that this module has potential applications in improving grain size and yield in key cereal crops.","PeriodicalId":501012,"journal":{"name":"The Plant Cell","volume":"51 1","pages":""},"PeriodicalIF":0.0,"publicationDate":"2026-04-10","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"147663743","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Heterodimers of the MADS transcription factors GhAGL1 and GhAGL4 modulate cotton fiber initiation and elongation.","authors":"Mengling Sun,Yawen Xiao,Xiaxia Liu,Yuqi Liu,Menghui Zheng,Tian Lei,Yirong Tao,Weiran Wang,Chunyuan You,Zixin Zhou,Xianlong Zhang,Jie Kong,Lili Tu","doi":"10.1093/plcell/koag107","DOIUrl":"https://doi.org/10.1093/plcell/koag107","url":null,"abstract":"The initial number of fibers and fiber length affect fiber yield and quality in cotton (Gossypium hirsutum). The mechanism of fiber initiation centers on the transcription factor GhMYB25-like, and the involvement of other regulatory factors remains unclear. Here, we established a GhMYB25-like-based interaction network that regulates fiber initiation, and focused on the interacting protein AGAMOUS-like 4 (GhAGL4), which is a MIKC-MADS transcription factor, and other MIKC-MADS family members. Genome-wide identification of the cotton MIKC-MADS family members identified two highly co-expressed genes, GhAGL1 and GhAGL4, which are predominantly expressed in ovules at 0 days post-anthesis (DPA). CRISPR/Cas9-mediated loss of function of GhAGL1 or GhAGL4 led to a decrease in fiber initials and impeded fiber elongation, with the Ghagl1 Ghagl4 double mutant exhibiting a stronger phenotype. GhAGL1 and GhAGL4 interact in vitro and in vivo. DNA affinity purification and sequencing (DAP-seq) combined with RNA sequencing identified CCCH zinc finger 1 (GhCZF1) as a downstream gene of GhAGL1 and GhAGL4. Interestingly, GhMYB25-like enhances the ability of GhAGL1-GhAGL4 heterodimers to activate downstream genes. During the early fiber elongation stage, GhCZF1 activates the expression of the xyloglucan endotransglycosylase/hydrolase (XTH) genes GhXTH16 and GhXTH23 to regulate fiber elongation. Our findings reveal a molecular mechanism involved in fiber initiation and early elongation, providing a foundation for enhancing cotton fiber yield and quality.","PeriodicalId":501012,"journal":{"name":"The Plant Cell","volume":"279 3 1","pages":""},"PeriodicalIF":0.0,"publicationDate":"2026-04-10","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"147663782","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"MdARF16/17 Link Auxin Signaling to Ma1-Independent Control of Vacuolar Malate Transport in Apple.","authors":"Chu-Kun Wang,Meng-Meng Wei,Fan Xiao,Yi-Tser Tsai,Xiao-Long Liu,Lian-Da Du,Yu-Wen Zhao,Xiao-Wen He,Peng-Liang Han,Hai-Bo Wang,Nan Wang,Mengxia Zhang,Sen Wang,Ting-Ting Zhao,Miguel A Piñeros,Lin-Guang Li,Xue-Sen Chen,Lailiang Cheng,Da-Gang Hu","doi":"10.1093/plcell/koag106","DOIUrl":"https://doi.org/10.1093/plcell/koag106","url":null,"abstract":"Auxin is a central plant hormone, and organic acids are key determinants of fruit acidity and flavor; however, the molecular mechanism connecting auxin signaling to organic acids remains elusive. Here, we report a negative correlation between auxin levels and malate, the predominant organic acid in apple (Malus domestica), in progenies of 'Gala' × 'Mato 1' and across fruit developmental stages. This suggests that auxin reduces malate levels independently of Ma1, an aluminum-activated malate transporter (ALMT) gene that is the causal gene for the major QTL determining fruit acidity in apple. Integrated bulked segregant analysis and RNA-seq identified MdARF16 and MdARF17 as auxin-responsive transcription factors that repress malate accumulation. Auxin represses two tonoplast-localized malate transporter genes, the ALMT gene MdALMT9L and the MdMATEL2 gene, which encodes a functionally distinct multidrug and toxic compound extrusion (MATE) protein. However, auxin does not repress Ma1. This repression requires the cooperative action of MdARF16 and MdARF17, which directly bind the promoters of the malate transporter genes to inhibit transcription. Decreased malate transporter levels then restrict cytosolic-to-vacuolar malate transport. These findings reveal a Ma1-independent auxin-MdARF16/17 pathway controlling vacuolar malate transport in apple, offering a molecular framework for the auxin-responsive improvement of organic acid traits.","PeriodicalId":501012,"journal":{"name":"The Plant Cell","volume":"21 1","pages":""},"PeriodicalIF":0.0,"publicationDate":"2026-04-10","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"147663783","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
The Plant CellPub Date : 2026-04-10DOI: 10.1093/plcell/koag108
Zhi Juan Cheng,Meng Ru Zhang,Huan Kai Zhang,Xiao Li Chu,Bing Zhen Li,Miao Miao Zhang,Jia Yang Li,Wan Chen Dong,De Hao Wang,Wen Qi Xin,Xin Lin Han,Cai Yu Yu,Zhi Wei Wang,Xiao Hang Zhang,Jiong Hui Liu,Xian Sheng Zhang,Ya Lin Sang
{"title":"The Arabidopsis ARF3-AIP1/2-SAP18 module specifies the root stem cell niche in response to auxin.","authors":"Zhi Juan Cheng,Meng Ru Zhang,Huan Kai Zhang,Xiao Li Chu,Bing Zhen Li,Miao Miao Zhang,Jia Yang Li,Wan Chen Dong,De Hao Wang,Wen Qi Xin,Xin Lin Han,Cai Yu Yu,Zhi Wei Wang,Xiao Hang Zhang,Jiong Hui Liu,Xian Sheng Zhang,Ya Lin Sang","doi":"10.1093/plcell/koag108","DOIUrl":"https://doi.org/10.1093/plcell/koag108","url":null,"abstract":"In the root apical meristem, the stem cell niche (SCN) comprises a mitotically inactive quiescent center (QC) and adjacent, mitotically active stem cells that divide to form root tissues. Auxin dynamics are essential for specification and maintenance of the root SCN; however, the underlying mechanisms remain to be explored. Here, we report that Arabidopsis (Arabidopsis thaliana) AUXIN RESPONSE FACTOR3 (ARF3), ARF3-INTERACTING PROTEIN1/2 (AIP1/2) and SIN3-ASSOCIATED POLYPEPTIDE OF 18 KDA (SAP18) form a protein complex that specifies root SCN cell fate in response to auxin level. In cells proximal to the QC, the ARF3-AIP1/2-SAP18 complex bound the WOX5 promoter and restricted WOX5 expression to the QC by decreasing H3 histone acetylation, thereby maintaining the SCN. Disrupting the ARF3-AIP1/2-SAP18 complex via mutation or exposure to excessive amounts of auxin resulted in proximal and lateral expansion of WOX5 expression, and inhibited root elongation by repressing cell division. During de novo specification of the SCN in lateral root primordia or regenerating root tips, accumulated auxin caused the ARF3-AIP1/2-SAP18 complex to dissociate, allowing the induction of WOX5 expression. In the reestablished meristem, the ARF3-AIP1/2-SAP18 complex confines WOX5 expression to the newly formed QC. Our findings provide insights into the roles of auxin dynamics in determining root SCN.","PeriodicalId":501012,"journal":{"name":"The Plant Cell","volume":"67 1","pages":""},"PeriodicalIF":0.0,"publicationDate":"2026-04-10","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"147663780","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}