The Plant Cell最新文献

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Potential and challenges for application of microbiomes in agriculture 微生物组在农业中的应用潜力与挑战
The Plant Cell Pub Date : 2025-07-28 DOI: 10.1093/plcell/koaf185
Charles Copeland, Paul Schulze-Lefert, Ka-Wai Ma
{"title":"Potential and challenges for application of microbiomes in agriculture","authors":"Charles Copeland, Paul Schulze-Lefert, Ka-Wai Ma","doi":"10.1093/plcell/koaf185","DOIUrl":"https://doi.org/10.1093/plcell/koaf185","url":null,"abstract":"The plant microbiome can promote plant health and productivity through a multitude of mechanisms. Our understanding of plant microbiome interaction relies on descriptive natural surveys and experiments performed under simplified laboratory environments. While reductionist approaches are essential to understand mechanisms of plant-microbiome interactions, they risk missing emergent community properties seen in nature. To bridge the gap between basic research and real-world deployment of the microbiome for translational application, one has to consider both functional association as well as ecological principles governing interspecies and interkingdom interactions. In this review, we discuss the beneficial potential of plant microbiomes to enhance plant growth, nutrition, stress tolerance, pathogen protection and commercial value through the modulation of taste and flavors, using examples from both model plants and agriculturally important crops. We then discuss how microbial invasion and persistence in standing communities, tradeoffs under multiple stressors and community instability under host- and environment-imposed modulation should be considered in the rational design of microbial inocula, followed by a scrutiny of the method of microbial delivery. We synthesize ideas on how multiomic data including genomics, transcriptomes and metabolomics can be leveraged to identify strains or target genes of interest for functional studies, and how machine learning algorithms can be incorporated to enable prediction of plant microbiome interactions. Microbiome-based strategies hold promise for improvements in agriculture. Despite the intrinsic complexity of the underlying interactions, interdisciplinary approaches are constantly providing insight into microbiome functioning and assembly principles, which is key towards knowledge-based engineering of the microbiome for increased and sustainable crop performance.","PeriodicalId":501012,"journal":{"name":"The Plant Cell","volume":"22 1","pages":""},"PeriodicalIF":0.0,"publicationDate":"2025-07-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144715359","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
PlantConnectome: a knowledge graph database encompassing >71,000 plant articles. PlantConnectome:一个知识图谱数据库,包含bbb71,000篇植物文章。
The Plant Cell Pub Date : 2025-07-23 DOI: 10.1093/plcell/koaf169
Shan Chun Lim,Manoj Itharajula,Mads Harder Møller,Rohan Shawn Sunil,Kevin Fo,Yu Song Chuah,Herman Foo,Emilia Emmanuelle Davey,Melissa Fullwood,Guillaume Thibault,Marek Mutwil
{"title":"PlantConnectome: a knowledge graph database encompassing >71,000 plant articles.","authors":"Shan Chun Lim,Manoj Itharajula,Mads Harder Møller,Rohan Shawn Sunil,Kevin Fo,Yu Song Chuah,Herman Foo,Emilia Emmanuelle Davey,Melissa Fullwood,Guillaume Thibault,Marek Mutwil","doi":"10.1093/plcell/koaf169","DOIUrl":"https://doi.org/10.1093/plcell/koaf169","url":null,"abstract":"One of the main quests in plant biology is understanding how gene products and metabolites work together to form complex networks that drive plant development and responses to environmental stimuli. However, the ever-growing volume and diversity of scientific literature make it increasingly challenging to stay current with the latest advances in functional genetics studies. Here, we tackled this challenge by deploying the text-mining capacities of large language models to process over 71,000 plant biology abstracts. Our approach presents nearly five million functional relationships between 2.4 million biological entities-genes or gene products, metabolites, tissues, and others-with a high accuracy of over 85%. We encapsulated these findings in the user-friendly database PlantConnectome and demonstrated its diverse utility by providing insights into gene regulatory networks, protein-protein interactions, and stress responses. We believe this innovative use of AI in the life sciences will allow plant scientists to keep up to date with the rapidly growing corpus of scientific literature. PlantConnectome is available at https://plant.connectome.tools/.","PeriodicalId":501012,"journal":{"name":"The Plant Cell","volume":"64 1","pages":""},"PeriodicalIF":0.0,"publicationDate":"2025-07-23","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144693211","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Forever green: A Temporal physiological and metabolic analysis reveals genetic drivers of the staygreen trait in maize. 永葆青春:一项时间生理和代谢分析揭示了玉米永葆青春性状的遗传驱动因素。
The Plant Cell Pub Date : 2025-07-23 DOI: 10.1093/plcell/koaf181
Christian Damian Lorenzo
{"title":"Forever green: A Temporal physiological and metabolic analysis reveals genetic drivers of the staygreen trait in maize.","authors":"Christian Damian Lorenzo","doi":"10.1093/plcell/koaf181","DOIUrl":"https://doi.org/10.1093/plcell/koaf181","url":null,"abstract":"","PeriodicalId":501012,"journal":{"name":"The Plant Cell","volume":"703 1","pages":""},"PeriodicalIF":0.0,"publicationDate":"2025-07-23","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144693210","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Dark-inducible BGH2 suppresses GLK transcription factors and maintains plastid homeostasis to promote light adaptation. 暗诱导BGH2抑制GLK转录因子,维持质体内稳态,促进光适应。
The Plant Cell Pub Date : 2025-07-22 DOI: 10.1093/plcell/koaf180
Ryo Tachibana,Rino Akema,Akiko Yoshihara,Chihiro Ujihara,Kaisei Nishida,Shunshu Ri,Ayumi Yamagami,Takuya Miyakawa,Koichi Kobayashi,Ryouichi Tanaka,Takeshi Nakano
{"title":"Dark-inducible BGH2 suppresses GLK transcription factors and maintains plastid homeostasis to promote light adaptation.","authors":"Ryo Tachibana,Rino Akema,Akiko Yoshihara,Chihiro Ujihara,Kaisei Nishida,Shunshu Ri,Ayumi Yamagami,Takuya Miyakawa,Koichi Kobayashi,Ryouichi Tanaka,Takeshi Nakano","doi":"10.1093/plcell/koaf180","DOIUrl":"https://doi.org/10.1093/plcell/koaf180","url":null,"abstract":"Light is an essential energy source for plants, but it can cause harmful photooxidative damage that induces cell death. When dark-germinated plants are exposed to the light, etioplasts differentiate into chloroplasts, converting protochlorophyllide (Pchlide) into chlorophyll, while excessive free Pchlide accumulation in etioplasts causes reactive oxygen species (ROS) generation and cell death under light conditions. Despite this knowledge, the molecular mechanisms by which dark-germinated plants adapt to the light environment via transcriptional regulation of chlorophyll biosynthesis remain unclear. We previously identified BRZ-INSENSITIVE-PALE GREEN 4 (BPG4) as a light-inducible chloroplast homeostasis factor. Here, we identified the BPG4 paralog BPG4 HOMOLOGOUS GENE 2 (BGH2) as a nucleus-localized plastid regulator required for light adaptation in Arabidopsis thaliana. Dark-inducible BGH2 interacts with GOLDEN2-LIKE 1 (GLK1) and GLK2, master transcription factors regulating chlorophyll biosynthesis. This interaction suppresses excessive photosynthesis-associated nuclear gene (PhANG) expression, avoids Pchlide overaccumulation in the dark, prevents ROS generation, and promotes healthy cotyledon greening during de-etiolation. BPG4 and BGH2 expression is regulated by GLK and PHYTOCHROME-INTERACTING FACTOR transcription factors under light and dark conditions. Overall, our findings suggest that BGH2 plays an essential role in fine-tuning chlorophyll biosynthesis and etioplast homeostasis by inhibiting GLK transcriptional activity and excessive PhANG expression in the dark.","PeriodicalId":501012,"journal":{"name":"The Plant Cell","volume":"11 1","pages":""},"PeriodicalIF":0.0,"publicationDate":"2025-07-22","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144684239","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Metacaspase-Peps-PEPR: The three musketeers in boosting wheat resistance against Fusarium head blight. Metacaspase-Peps-PEPR:提高小麦抗枯萎病能力的三剑客。
The Plant Cell Pub Date : 2025-07-22 DOI: 10.1093/plcell/koaf182
Margot Raffeiner
{"title":"Metacaspase-Peps-PEPR: The three musketeers in boosting wheat resistance against Fusarium head blight.","authors":"Margot Raffeiner","doi":"10.1093/plcell/koaf182","DOIUrl":"https://doi.org/10.1093/plcell/koaf182","url":null,"abstract":"","PeriodicalId":501012,"journal":{"name":"The Plant Cell","volume":"211 1","pages":""},"PeriodicalIF":0.0,"publicationDate":"2025-07-22","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144684244","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Temporal analysis of physiological phenotypes identifies metabolic and genetic underpinnings of senescence in maize 生理表型的时间分析确定了玉米衰老的代谢和遗传基础
The Plant Cell Pub Date : 2025-07-22 DOI: 10.1093/plcell/koaf176
Manwinder S Brar, Rohit Kumar, Bharath Kunduru, Elizabeth Leonard, Christopher S McMahan, Nishanth Tharayil, Rajandeep S Sekhon
{"title":"Temporal analysis of physiological phenotypes identifies metabolic and genetic underpinnings of senescence in maize","authors":"Manwinder S Brar, Rohit Kumar, Bharath Kunduru, Elizabeth Leonard, Christopher S McMahan, Nishanth Tharayil, Rajandeep S Sekhon","doi":"10.1093/plcell/koaf176","DOIUrl":"https://doi.org/10.1093/plcell/koaf176","url":null,"abstract":"Delayed leaf senescence (staygreen) is an important agronomic trait associated with enhanced resilience to abiotic and biotic stresses and improved productivity. While senescence induces large-scale metabolomic changes, the characterization of metabolic shifts and the identification of key metabolites and pathways determining the staygreen trait remain limited. Here, we generated a temporal map of the physiological and metabolic variation in genetically diverse maize (Zea mays) inbred lines spanning the staygreen spectrum. Integrated analysis of the captured phenotypic variation revealed substantial metabolic perturbations and identified 42 primary and 141 specialized leaf metabolites. Non-staygreen inbred lines were enriched in primary metabolites represented by sugar alcohols (notably mannitol and erythritol), and amino acids including phenylalanine and arginine. In contrast, the staygreen inbred lines accumulated higher levels of specialized metabolites, primarily phenylpropanoids. Metabolome-to-genome mapping identified 56 candidate genes expressed in adult maize leaves responsible for the metabolic changes that occur during senescence. Reverse genetics validated the role of naringenin chalcone and eriodictyol in maize and Arabidopsis thaliana leaf senescence, demonstrating a conserved function of these flavonoids across monocots and dicots. Together, our results reveal the coordinated physiological and metabolic programs that govern senescence and provide a curated set of metabolites and genes underlying this complex process.","PeriodicalId":501012,"journal":{"name":"The Plant Cell","volume":"16 1","pages":""},"PeriodicalIF":0.0,"publicationDate":"2025-07-22","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144684445","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Arabidopsis GELP53 overexpression modulates polysaccharide acetylation and defense through oligosaccharide-mediated signaling. 拟南芥GELP53过表达通过低聚糖介导的信号传导调节多糖乙酰化和防御。
The Plant Cell Pub Date : 2025-07-22 DOI: 10.1093/plcell/koaf184
Lavi Rastogi,Muhammad-Moazzam Hussain,Shivangi Tyagi,Kristi Kabyashree,Naman Kharbanda,Puneet Srivastva,Rakesh Chaudhary,Tushar Kanti Maiti,Vengadesan Krishnan,Gopaljee Jha,Aline Voxeur,Tripti Shrivastava,Prashant Anupama-Mohan Pawar
{"title":"Arabidopsis GELP53 overexpression modulates polysaccharide acetylation and defense through oligosaccharide-mediated signaling.","authors":"Lavi Rastogi,Muhammad-Moazzam Hussain,Shivangi Tyagi,Kristi Kabyashree,Naman Kharbanda,Puneet Srivastva,Rakesh Chaudhary,Tushar Kanti Maiti,Vengadesan Krishnan,Gopaljee Jha,Aline Voxeur,Tripti Shrivastava,Prashant Anupama-Mohan Pawar","doi":"10.1093/plcell/koaf184","DOIUrl":"https://doi.org/10.1093/plcell/koaf184","url":null,"abstract":"O-acetylation is a crucial substitution found in hemicelluloses and pectin, which are necessary for maintaining the flexibility and structural integrity of the cell. Cell wall acetyl transferases and esterases maintain balanced polysaccharide O-acetylation levels, however the role of esterases in cell wall polysaccharide O-acetylation metabolism is not well explored. Therefore, we investigated the role of the Arabidopsis (Arabidopsis thaliana) GDSL Esterase/Lipase Protein (GELP) family member AtGELP53. Here, we show that AtGELP53 is localized in the plasma membrane. Analysis of AtGELP53-overexpressing independent transgenic lines revealed a decrease in xyloglucan acetylation, changes in acetylation of other polysaccharides, and alterations in cell wall composition. Molecular docking and in vitro protein activity assays showed that AtGELP53 might deacetylate xyloglucan and xylan. Elicitor-based, transcriptomic, and proteomic analyses in AtGELP53-overexpressing lines suggested that oligosaccharide-mediated signaling activates the cell wall and defense-related genes primarily through xyloglucan deacetylation. Furthermore, AtGELP53-overexpressing plants showed resistance against Pseudomonas syringae and Ralstonia solanacearum through activation of elicitor-mediated defense responses. Overall, our findings outline the role of AtGELP53 in polysaccharide acetylation, cell wall remodeling, and defense through oligosaccharide signaling.","PeriodicalId":501012,"journal":{"name":"The Plant Cell","volume":"53 2 1","pages":""},"PeriodicalIF":0.0,"publicationDate":"2025-07-22","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144684241","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Jasmonate signaling coordinates with the SOD7-KLU pathway to regulate seed size in Arabidopsis thaliana. 拟南芥中茉莉酸盐信号与SOD7-KLU信号通路协同调节种子大小。
The Plant Cell Pub Date : 2025-07-18 DOI: 10.1093/plcell/koaf178
Juping Zhang,Jian Yao,Kunrong He,Chunlan Yu,Jie Du,Jiancan Du,Qiantang Fu,Ruifeng Yao,Gregg A Howe,Xiao Han,Yanru Hu
{"title":"Jasmonate signaling coordinates with the SOD7-KLU pathway to regulate seed size in Arabidopsis thaliana.","authors":"Juping Zhang,Jian Yao,Kunrong He,Chunlan Yu,Jie Du,Jiancan Du,Qiantang Fu,Ruifeng Yao,Gregg A Howe,Xiao Han,Yanru Hu","doi":"10.1093/plcell/koaf178","DOIUrl":"https://doi.org/10.1093/plcell/koaf178","url":null,"abstract":"Seed size is crucial for crop yield and plant ecological fitness. The phytohormone jasmonate regulates Arabidopsis thaliana seed size, but the underlying molecular mechanisms remain elusive. Here, we established that CORONATINE INSENSITIVE1 (COI1)-mediated jasmonate signaling acts maternally to repress seed growth. Accordingly, jasmonate signaling suppresses the expression of KLUH (KLU), encoding an inducer of integument cell proliferation. KLU regulates the effects of COI1-mediated signaling on seed size. The JASMONATE ZIM-DOMAIN (JAZ) repressors of jasmonate signaling interact with SUPPRESSOR OF DA1-1 (SOD7) and DEVELOPMENT-RELATED PcG TARGET IN THE APEX4 (DPA4), two transcription factors that directly repress KLU. Overexpression of SOD7 largely rescues the seed size phenotype of coi1 mutants and JAZ1-overexpressing JAZ1-ΔJas plants. Furthermore, SOD7 associates with MYC2 and MYC4, two master transcriptional regulators of jasmonate signaling. SOD7 and MYC2 synergistically decrease KLU transcription and inhibit seed growth, while JAZ1 interferes with their transcriptional activities and physical interaction. Notably, jasmonate signaling considerably impacts seed size under salinity stress, primarily through SOD7 and KLU. Collectively, our findings suggest that the JAZ repressors and MYC transcription factors of the jasmonate signaling pathway coordinate with the SOD7/DPA4-KLU pathway to incorporate jasmonate signals into seed development.","PeriodicalId":501012,"journal":{"name":"The Plant Cell","volume":"2 1","pages":""},"PeriodicalIF":0.0,"publicationDate":"2025-07-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144652864","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The metacaspase-Peps-PEPR immune module confers resistance to Fusarium head blight in wheat. metacaspase-Peps-PEPR免疫模块对小麦赤霉病具有抗性。
The Plant Cell Pub Date : 2025-07-17 DOI: 10.1093/plcell/koaf177
Yifan Dong,Qi An,Yi He,Yue Zhang,Ge Guo,Changsheng Zhang,Yicong Zhang,Xiaobo Xia,Yuhua Wang,Shiyu Zhang,Dong-Lei Yang,Wujun Ma,Ryan Whitford,Xiujuan Yang,Zhengguang Zhang,Gang Li
{"title":"The metacaspase-Peps-PEPR immune module confers resistance to Fusarium head blight in wheat.","authors":"Yifan Dong,Qi An,Yi He,Yue Zhang,Ge Guo,Changsheng Zhang,Yicong Zhang,Xiaobo Xia,Yuhua Wang,Shiyu Zhang,Dong-Lei Yang,Wujun Ma,Ryan Whitford,Xiujuan Yang,Zhengguang Zhang,Gang Li","doi":"10.1093/plcell/koaf177","DOIUrl":"https://doi.org/10.1093/plcell/koaf177","url":null,"abstract":"Pathogens constantly attack staple crops, leading to substantial yield losses. Plant-pathogen interactions activate endogenous plant-secreted peptides, which act as immunity inducers and are promising breeding targets for enhancing crop resistance to pathogens. However, the identification and mechanisms of immunogenic peptides in staple crops remain largely unexplored. Here, we demonstrated that plant elicitor peptides (TaPeps) in wheat (Triticum aestivum), processed by a metacaspase, are competent to trigger plant immunity and contribute to resistance against Fusarium head blight (FHB). Using exogenous phytocytokine peptide screens, we identified three potential TaPeps acting as elicitors that significantly improve FHB resistance. Mechanistically, these elicitors activate innate immune signals and calcium dynamics in response to the Fusarium pathogen via wheat PEP RECEPTOR 1 (TaPEPR1). Overexpression of endogenous PRECURSOR OF PEPs (TaPROPEPs) further reduces FHB severity. Moreover, we characterized the natural form of TaPeps in planta, revealing that the wheat type-II metacaspase TaMCA-IIa cleaves TaPROPEPs at a conserved arginine residue, promoting TaPep maturation and immune activation. In Tamca-IIa mutants, the efficiency of TaPep maturation was decreased and calcium dynamics were impaired, resulting in FHB susceptibility. Conversely, overexpressing TaMCA-IIa in wheat enhanced the immune response and FHB resistance without causing pleiotropic growth penalties. Our findings highlight TaPeps as potential immune-inducing biologicals for crop protection and uncover the metacaspase-Peps-receptor module in mediating plant disease resistance.","PeriodicalId":501012,"journal":{"name":"The Plant Cell","volume":"14 1","pages":""},"PeriodicalIF":0.0,"publicationDate":"2025-07-17","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144652857","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
A subset of group S1 bZIP transcription factors controls resource management during starvation and recovery in Arabidopsis S1组bZIP转录因子的一个子集控制着拟南芥在饥饿和恢复期间的资源管理
The Plant Cell Pub Date : 2025-07-15 DOI: 10.1093/plcell/koaf149
Theresa Wildenhain, Cezary Smaczniak, Alexander Marsell, Jan Draken, Daniel Maag, Philipp Kreisz, Markus Krischke, Martin J Müller, Kerstin Kaufmann, Christoph Weiste, Wolfgang Dröge-Laser
{"title":"A subset of group S1 bZIP transcription factors controls resource management during starvation and recovery in Arabidopsis","authors":"Theresa Wildenhain, Cezary Smaczniak, Alexander Marsell, Jan Draken, Daniel Maag, Philipp Kreisz, Markus Krischke, Martin J Müller, Kerstin Kaufmann, Christoph Weiste, Wolfgang Dröge-Laser","doi":"10.1093/plcell/koaf149","DOIUrl":"https://doi.org/10.1093/plcell/koaf149","url":null,"abstract":"Plants exhibit considerable phenotypic plasticity, allowing them to adapt their metabolism to the fluctuating energy supply in a natural environment. Using dark-induced senescence (DIS) as an experimental system, a mutant study combining phenotypic, transcriptomic and chromatin immunoprecipitation sequencing (ChIP-seq) approaches identified distinct members of the Arabidopsis thaliana group S1 basic leucine zipper (bZIP) transcription factors that orchestrate the starvation response. Whereas excluding bZIP2, bZIP11 and bZIP44 to play a major role in DIS, bZIP1 and bZIP53 act partially redundantly to control a co-expression network governing amino acid catabolism and transport, gluconeogenesis and energy homeostasis. Moreover, bZIP1 and bZIP53 regulate genes involved in the asparagine–glutamine balance, two amino acids critical for carbon and nitrogen homeostasis. This transcriptional reprogramming in resource management is required for survival during starvation and regaining meristematic activity during the recovery from stress. Thus, our findings provide insights into the transcriptional control of plant resource and energy management during starvation. Overall, this work sheds light on the discrepancy between in vitro DNA binding and overexpression studies versus mutant analyses and in vivo DNA binding, providing a critical view on how to define specific transcription factor functions within large families.","PeriodicalId":501012,"journal":{"name":"The Plant Cell","volume":"97 1","pages":""},"PeriodicalIF":0.0,"publicationDate":"2025-07-15","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144639660","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
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