Mathematical Biosciences and Engineering最新文献

Multiscale modelling of hepatitis B virus at cell level of organization. 从细胞组织层面对乙型肝炎病毒进行多尺度建模。

IF 2.6 4区工程技术

Mathematical Biosciences and Engineering Pub Date : 2024-09-27 DOI: 10.3934/mbe.2024316

Huguette Laure Wamba Makeng, Ivric Valaire Yatat-Djeumen, Bothwell Maregere, Rendani Netshikweta, Jean Jules Tewa, Winston Garira

{"title":"Multiscale modelling of hepatitis B virus at cell level of organization.","authors":"Huguette Laure Wamba Makeng, Ivric Valaire Yatat-Djeumen, Bothwell Maregere, Rendani Netshikweta, Jean Jules Tewa, Winston Garira","doi":"10.3934/mbe.2024316","DOIUrl":"https://doi.org/10.3934/mbe.2024316","url":null,"abstract":"Multiscale modelling is a promising quantitative approach for studying infectious disease dynamics. This approach garners attention from both individuals who model diseases and those who plan for public health because it has great potential to contribute in expanding the understanding necessary for managing, reducing, and potentially exterminating infectious diseases. In this article, we developed a nested multiscale model of hepatitis B virus (HBV) that integrates the within-cell scale and the between-cell scale at cell level of organization of this disease system. The between-cell scale is linked to the within-cell scale by a once off inflow of initial viral infective inoculum dose from the between-cell scale to the within-cell scale through the process of infection; the within-cell scale is linked to the between-cell scale through the outflow of the virus from the within-cell scale to the between-cell scale through the process of viral shedding or excretion. The resulting multiple scales model is bidirectionally coupled in such a way that the within-cell scale and between-cell scale sub-models mutually affect each other, creating a reciprocal relationship. The computed reproductive number from the multiscale model confirms that the within-host scale and the between-host scale influence each other in a reciprocal manner. Numerical simulations are presented that also confirm the theoretical results and support the initial assumption that the within-cell scale and the between-cell scale influence each other in a reciprocal manner. This multiple scales modeling approach serves as a valuable tool for assessing the impact and success of health strategies aimed at controlling hepatitis B virus disease system.","PeriodicalId":49870,"journal":{"name":"Mathematical Biosciences and Engineering","volume":"21 9","pages":"7165-7193"},"PeriodicalIF":2.6,"publicationDate":"2024-09-27","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142559243","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"工程技术","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

引用次数: 0

Global sensitivity analysis and uncertainty quantification for a mathematical model of dry anaerobic digestion in plug-flow reactors. 塞流反应器干式厌氧消化数学模型的全局敏感性分析和不确定性量化。

IF 2.6 4区工程技术

Mathematical Biosciences and Engineering Pub Date : 2024-09-25 DOI: 10.3934/mbe.2024316

Daniele Bernardo Panaro, Andrea Trucchia, Vincenzo Luongo, Maria Rosaria Mattei, Luigi Frunzo

{"title":"Global sensitivity analysis and uncertainty quantification for a mathematical model of dry anaerobic digestion in plug-flow reactors.","authors":"Daniele Bernardo Panaro, Andrea Trucchia, Vincenzo Luongo, Maria Rosaria Mattei, Luigi Frunzo","doi":"10.3934/mbe.2024316","DOIUrl":"https://doi.org/10.3934/mbe.2024316","url":null,"abstract":"In many applications, complex biological phenomena can be reproduced via structured mathematical models, which depend on numerous biotic and abiotic input parameters, whose effect on model outputs can be of paramount importance. The calibration of model parameters is crucial to obtain the best fit between simulated and experimental data. Sensitivity analysis and uncertainty quantification constitute essential tools in the field of biological systems modeling. Despite the significant number of applications of sensitivity analysis in wet anaerobic digestion, there are no examples of global sensitivity analysis for mathematical models describing the dry anaerobic digestion in plug-flow reactors. For the first time, the present study explores the global sensitivity analysis and uncertainty quantification for a plug-flow reactor model. The investigated model accounts for the mass$ / $volume variation that takes place in these systems as a result of solid waste conversion in gaseous value-added compounds. A preliminary screening based on the Morris' method allowed for the definition of three different groups of parameters. A surrogate model was constructed to investigate the relation between input and output parameters without running demanding simulations from scratch. The obtained Sobol' indices allowed to perform the quantitative global sensitivity analysis. Finally, the uncertainty quantification results led to the definition of the probability density function related to the investigated quantity of interest. The study showed that the net methane production is mostly sensitive to the values of the conversion parameter related to the particulate biodegradable volatile solids in acetic acid $ k_1 $ and to the kinetic parameter describing the acetic acid uptake $ k_2 $. The application of these techniques led to helpful information for model calibration and validation.","PeriodicalId":49870,"journal":{"name":"Mathematical Biosciences and Engineering","volume":"21 9","pages":"7139-7164"},"PeriodicalIF":2.6,"publicationDate":"2024-09-25","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142559240","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"工程技术","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

引用次数: 0

Depression-induced changes in directed functional brain networks: A source-space resting-state EEG study. 抑郁症诱发的定向大脑功能网络变化：源空间静息态脑电图研究

IF 2.6 4区工程技术

Mathematical Biosciences and Engineering Pub Date : 2024-09-23 DOI: 10.3934/mbe.2024315

Zhongwen Jia, Lihan Tang, Jidong Lv, Linhong Deng, Ling Zou

{"title":"Depression-induced changes in directed functional brain networks: A source-space resting-state EEG study.","authors":"Zhongwen Jia, Lihan Tang, Jidong Lv, Linhong Deng, Ling Zou","doi":"10.3934/mbe.2024315","DOIUrl":"https://doi.org/10.3934/mbe.2024315","url":null,"abstract":"Current research confirms abnormalities in resting-state electroencephalogram (EEG) power and functional connectivity (FC) patterns in specific brain regions of individuals with depression. To study changes in the flow of information between cortical regions of the brain in patients with depression, we used 64-channel EEG to record neural oscillatory activity in 68 relevant cortical regions in 22 depressed patients and 22 healthy adolescents using source-space EEG. The direction and strength of information flow between brain regions was investigated using directional phase transfer entropy (PTE). Compared to healthy controls, we observed an increased intensity of PTE information flow between the left and right hemispheres in the theta and alpha frequency bands in depressed subjects. The intensity of information flow between anterior and posterior regions within each hemisphere was reduced. Significant differences were found in the left supramarginal gyrus, right delta in the theta frequency band and bilateral lateral occipital lobe, and paracentral gyrus and parahippocampal gyrus in the alpha frequency band. The accuracy of cross-classification of directed PTE values with significant differences between groups was 91%. These findings suggest that altered information flow in the brains of depressed patients is related to the pathogenesis of depression, providing insights for patient identification and pathological studies.","PeriodicalId":49870,"journal":{"name":"Mathematical Biosciences and Engineering","volume":"21 9","pages":"7124-7138"},"PeriodicalIF":2.6,"publicationDate":"2024-09-23","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142559237","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"工程技术","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

引用次数: 0

Mathematical modeling of infectious diseases and the impact of vaccination strategies. 传染病数学模型和疫苗接种策略的影响。

IF 2.6 4区工程技术

Mathematical Biosciences and Engineering Pub Date : 2024-09-19 DOI: 10.3934/mbe.2024314

Diana Bolatova, Shirali Kadyrov, Ardak Kashkynbayev

{"title":"Mathematical modeling of infectious diseases and the impact of vaccination strategies.","authors":"Diana Bolatova, Shirali Kadyrov, Ardak Kashkynbayev","doi":"10.3934/mbe.2024314","DOIUrl":"https://doi.org/10.3934/mbe.2024314","url":null,"abstract":"Mathematical modeling plays a crucial role in understanding and combating infectious diseases, offering predictive insights into disease spread and the impact of vaccination strategies. This paper explored the significance of mathematical modeling in epidemic control efforts, focusing on the interplay between vaccination strategies, disease transmission rates, and population immunity. To facilitate meaningful comparisons of vaccination strategies, we maintained a consistent framework by fixing the vaccination capacity to vary from 10 to 100% of the total population. As an example, at a 50% vaccination capacity, the pulse strategy averted approximately 45.61% of deaths, while continuous and hybrid strategies averted around 45.18 and 45.69%, respectively. Sensitivity analysis further indicated that continuous vaccination has a more direct impact on reducing the basic reproduction number $ R_0 $ compared to pulse vaccination. By analyzing key parameters such as $ R_0 $, pulse vaccination coefficients, and continuous vaccination parameters, the study underscores the value of mathematical modeling in shaping public health policies and guiding decision-making during disease outbreaks.","PeriodicalId":49870,"journal":{"name":"Mathematical Biosciences and Engineering","volume":"21 9","pages":"7103-7123"},"PeriodicalIF":2.6,"publicationDate":"2024-09-19","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142559242","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"工程技术","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

引用次数: 0

Retraction notice to "A novel architecture design for artificial intelligence-assisted culture conservation management system" [Mathematical Biosciences and Engineering 20(6) (2023) 9693-9711]. 人工智能辅助培养管理系统的新型架构设计"[数学生物科学与工程 20(6) (2023) 9693-9711]的撤稿通知。

IF 2.6 4区工程技术

Mathematical Biosciences and Engineering Pub Date : 2024-09-18 DOI: 10.3934/mbe.2024313

Editorial Office Of Mathematical Biosciences And Engineering

引用次数: 0

Vaccine-induced reduction of COVID-19 clusters in school settings in Japan during the epidemic wave caused by B.1.1.529 (Omicron) BA.2, 2022. 在 2022 年 B.1.1.529（Omicron）BA.2 引起的流行病浪潮中，疫苗诱导减少了日本学校环境中的 COVID-19 集群。

IF 2.6 4区工程技术

Mathematical Biosciences and Engineering Pub Date : 2024-09-12 DOI: 10.3934/mbe.2024312

Yuta Okada, Hiroshi Nishiura

{"title":"Vaccine-induced reduction of COVID-19 clusters in school settings in Japan during the epidemic wave caused by B.1.1.529 (Omicron) BA.2, 2022.","authors":"Yuta Okada, Hiroshi Nishiura","doi":"10.3934/mbe.2024312","DOIUrl":"https://doi.org/10.3934/mbe.2024312","url":null,"abstract":"Clusters of COVID-19 in high-risk settings, such as schools, have been deemed a critical driving force of the major epidemic waves at the societal level. In Japan, the vaccination coverage among students remained low up to early 2022, especially for 5-11-year-olds. The vaccination of the student population only started in February 2022. Given this background and considering that vaccine effectiveness against school transmission has not been intensively studied, this paper proposes a mathematical model that links the occurrence of clustering to the case count among populations aged 0-19, 20-59, and 60+ years of age. We first estimated the protected (immune) fraction of each age group either by infection or vaccination and then linked the case count in each age group to the number of clusters via a time series regression model that accounts for the time-varying hazard of clustering per infector. From January 3 to May 30, 2022, there were 4,722 reported clusters in school settings. Our model suggests that the immunity offered by vaccination averted 226 (95% credible interval: 219-232) school clusters. Counterfactual scenarios assuming elevated vaccination coverage with faster roll-out reveal that additional school clusters could have been averted. Our study indicates that even relatively low vaccination coverage among students could substantially lower the risk of clustering through vaccine-induced immunity. Our results also suggest that antigenically updated vaccines that are more effective against the variant responsible for the ongoing epidemic may greatly help decrease not only the incidence but also the unnecessary loss of learning opportunities among school-age students.","PeriodicalId":49870,"journal":{"name":"Mathematical Biosciences and Engineering","volume":"21 9","pages":"7087-7101"},"PeriodicalIF":2.6,"publicationDate":"2024-09-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142559245","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"工程技术","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

引用次数: 0

Inference of a Susceptible-Infectious stochastic model. 易感-传染性随机模型的推理。

IF 2.6 4区工程技术

Mathematical Biosciences and Engineering Pub Date : 2024-09-10 DOI: 10.3934/mbe.2024310

Giuseppina Albano, Virginia Giorno, Francisco Torres-Ruiz

{"title":"Inference of a Susceptible-Infectious stochastic model.","authors":"Giuseppina Albano, Virginia Giorno, Francisco Torres-Ruiz","doi":"10.3934/mbe.2024310","DOIUrl":"https://doi.org/10.3934/mbe.2024310","url":null,"abstract":"We considered a time-inhomogeneous diffusion process able to describe the dynamics of infected people in a susceptible-infectious (SI) epidemic model in which the transmission intensity function was time-dependent. Such a model was well suited to describe some classes of micro-parasitic infections in which individuals never acquired lasting immunity and over the course of the epidemic everyone eventually became infected. The stochastic process related to the deterministic model was transformable into a nonhomogeneous Wiener process so the probability distribution could be obtained. Here we focused on the inference for such a process, by providing an estimation procedure for the involved parameters. We pointed out that the time dependence in the infinitesimal moments of the diffusion process made classical inference methods inapplicable. The proposed procedure were based on the generalized method of moments in order to find a suitable estimate for the infinitesimal drift and variance of the transformed process. Several simulation studies are conduced to test the procedure, these include the time homogeneous case, for which a comparison with the results obtained by applying the maximum likelihood estimation was made, and cases in which the intensity function were time dependent with particular attention to periodic cases. Finally, we applied the estimation procedure to a real dataset.","PeriodicalId":49870,"journal":{"name":"Mathematical Biosciences and Engineering","volume":"21 9","pages":"7067-7083"},"PeriodicalIF":2.6,"publicationDate":"2024-09-10","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142559241","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"工程技术","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

引用次数: 0

Editorial: Mathematical foundations in biological modelling and simulation. 社论：生物建模和模拟的数学基础。

IF 2.6 4区工程技术

Mathematical Biosciences and Engineering Pub Date : 2024-09-10 DOI: 10.3934/mbe.2024311

Gilberto González-Parra, Hana M Dobrovolny

引用次数: 0

A discrete two time scales model of a size-structured population of parasitized trees. 寄生树规模结构种群的离散双时间尺度模型。

IF 2.6 4区工程技术

Mathematical Biosciences and Engineering Pub Date : 2024-09-09 DOI: 10.3934/mbe.2024309

Rafael Bravo de la Parra, Ezio Venturino

{"title":"A discrete two time scales model of a size-structured population of parasitized trees.","authors":"Rafael Bravo de la Parra, Ezio Venturino","doi":"10.3934/mbe.2024309","DOIUrl":"https://doi.org/10.3934/mbe.2024309","url":null,"abstract":"The work presented a general discrete-time model of a population of trees affected by a parasite. The tree population was considered size-structured, and the parasite was represented by a single scalar variable. Parasite dynamics were assumed to act on a faster timescale than tree dynamics. The model was studied based on an associated nonlinear matrix model, in which the presence of the parasites was only reflected in the value of its parameters. For the model in all its generality, an explicit condition of viability/extinction of the parasite/tree community was found. In a simplified model with two size-classes of trees and particular forms of the vital rates, it was shown that the model undergoes a transcritical bifurcation and, likewise, a period-doubling bifurcation. It was found that, for any tree fertility rate that makes them viable without a parasite, if the parasite sufficiently reduces the survival of young trees, it can lead to the extinction of the entire community. The same cannot be assured if the parasite acts on adult trees. In situations where a high fertility rate coupled with a low survival rate of adult trees causes a non-parasitized population of trees to fluctuate, a parasite sufficiently damaging only young trees can stabilize the population. If, instead, the parasite acts on adult trees, we can find a destabilization condition on the tree population that brings them from a stable to an oscillating regime.","PeriodicalId":49870,"journal":{"name":"Mathematical Biosciences and Engineering","volume":"21 9","pages":"7040-7066"},"PeriodicalIF":2.6,"publicationDate":"2024-09-09","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142559236","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"工程技术","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

引用次数: 0

Global dynamics of a simple model for wild and sterile mosquitoes. 野生蚊子和不育蚊子简单模型的全球动态。

IF 2.6 4区工程技术

Mathematical Biosciences and Engineering Pub Date : 2024-09-05 DOI: 10.3934/mbe.2024308

Yu Ichida, Yukihiko Nakata

{"title":"Global dynamics of a simple model for wild and sterile mosquitoes.","authors":"Yu Ichida, Yukihiko Nakata","doi":"10.3934/mbe.2024308","DOIUrl":"https://doi.org/10.3934/mbe.2024308","url":null,"abstract":"There are known methods to manage the population dynamics of wild and sterile mosquitoes by releasing genetically engineered sterile mosquitoes. Even if a two-dimensional system of ordinary differential equations is considered as a simple mathematical model for developing release strategies, fully understanding the global behavior of the solutions is challenging, due to the fact that the probability of mating is ratio-dependent. In this paper, we combine a geometric approach called the time-scale transformation and blow-up technique with the center manifold theorem to provide a complete understanding of dynamical systems near the origin. Then, the global behavior of the solution of the two-dimensional ordinary differential equation system is classified in a two-parameter plane represented by the natural death rate of mosquitoes and the sterile mosquito release rate. We also offer a discussion of the sterile mosquito release strategy. In addition, we obtain a better exposition of the previous results on the existence and local stability of positive equilibria. This paper provides a framework for the mathematical analysis of models with ratio-dependent terms, and we expect that it will theoretically withstand the complexity of improved models.","PeriodicalId":49870,"journal":{"name":"Mathematical Biosciences and Engineering","volume":"21 9","pages":"7016-7039"},"PeriodicalIF":2.6,"publicationDate":"2024-09-05","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142559239","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"工程技术","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

引用次数: 0