{"title":"Toolkit for mapping the clonal landscape of tumor-infiltrating B cells","authors":"E.O. Serebrovskaya , E.A. Bryushkova , D.K. Lukyanov , N.V. Mushenkova , D.M. Chudakov , M.A. Turchaninova","doi":"10.1016/j.smim.2024.101864","DOIUrl":"10.1016/j.smim.2024.101864","url":null,"abstract":"<div><p><span><span>Our current understanding of whether B cell involvement in the tumor microenvironment benefits the patient or the tumor - in distinct cancers, subcohorts and individual patients - is quite limited. Both statements are probably true in most cases: certain clonal B cell populations contribute to the antitumor response, while others steer the immune response away from the desired mechanics. To step up to a new level of understanding and managing B cell behaviors in the tumor microenvironment, we need to rationally discern these roles, which are cumulatively defined by B cell clonal functional programs, specificities of their </span>B cell receptors, specificities and </span>isotypes<span> of the antibodies they produce, and their spatial interactions within the tumor environment. Comprehensive analysis of these characteristics of clonal B cell populations is now becoming feasible with the development of a whole arsenal of advanced technical approaches, which include (1) methods of single-cell and spatial transcriptomics<span>, genomics, and proteomics; (2) methods of massive identification of B cell specificities; (3) methods of deep error-free profiling of B cell receptor repertoires. Here we overview existing techniques, summarize their current application for B cells studies and propose promising future directions in advancing B cells exploration.</span></span></p></div>","PeriodicalId":49546,"journal":{"name":"Seminars in Immunology","volume":"72 ","pages":"Article 101864"},"PeriodicalIF":7.8,"publicationDate":"2024-01-31","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"139648542","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Type I and type III interferons: From basic biology and genetics to clinical development for COVID-19 and beyond","authors":"Evangelos Andreakos, COVID Human Genetic Effort","doi":"10.1016/j.smim.2024.101863","DOIUrl":"https://doi.org/10.1016/j.smim.2024.101863","url":null,"abstract":"<div><p><span>Type I and type III interferons (IFNs) constitute a key antiviral defense systems of the body, inducing viral resistance to cells and mediating diverse innate and adaptive immune functions. Defective type I and type III </span>IFN<span> responses have recently emerged as the 'Achilles heel' in COVID-19, with such patients developing severe disease and exhibiting a high risk for critical pneumonia and death. Here, we review the biology of type I and type III IFNs, their similarities and important functional differences, and their roles in SARS-CoV-2 infection. We also appraise the various mechanisms proposed to drive defective IFN responses in COVID-19 with particular emphasis to the ability of SARS-CoV-2 to suppress IFN production<span><span> and activities, the genetic factors involved and the presence of autoantibodies neutralizing IFNs and accounting for a large proportion of individuals with severe COVID-19. Finally, we discuss the long history of the type I IFN therapeutics for the </span>treatment of viral diseases<span>, cancer and multiple sclerosis, the various efforts to use them in respiratory infections, and the newly emerging type III IFN therapeutics, with emphasis to the more recent studies on COVID-19 and their potential use as broad spectrum antivirals for future epidemics or pandemics.</span></span></span></p></div>","PeriodicalId":49546,"journal":{"name":"Seminars in Immunology","volume":"72 ","pages":"Article 101863"},"PeriodicalIF":7.8,"publicationDate":"2024-01-24","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"139548594","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"To die or not to die: Gasdermins in intestinal health and disease","authors":"Zhaoyu Lin , Qianyue Chen , Hai-Bin Ruan","doi":"10.1016/j.smim.2024.101865","DOIUrl":"https://doi.org/10.1016/j.smim.2024.101865","url":null,"abstract":"<div><p><span><span>Intestinal homeostasis<span> is achieved by the balance among intestinal epithelium, </span></span>immune cells<span><span><span>, and gut microbiota. Gasdermins (GSDMs), a family of membrane pore forming proteins, can trigger rapid inflammatory </span>cell death<span> in the gut, mainly pyroptosis and </span></span>NETosis<span><span>. Importantly, there is increasing literature on the non-cell lytic roles of GSDMs in intestinal homeostasis and disease. While GSDMA is low and PJVK is not expressed in the gut, high GSDMB and GSDMC expression is found almost restrictively in intestinal epithelial cells. Conversely, GSDMD and GSDME show more ubiquitous expression among various cell types in the gut. The N-terminal region of GSDMs can be liberated for pore formation by an array of proteases in response to pathogen- and danger-associated signals, but it is not fully understood what cell type-specific mechanisms activate intestinal GSDMs. The host relies on GSDMs for </span>pathogen defense, tissue tolerance, and cancerous cell death; however, pro-inflammatory milieu caused by pyroptosis and excessive </span></span></span>cytokine release<span><span> may favor the development and progression of inflammatory bowel disease and cancer. Therefore, a thorough understanding of spatiotemporal mechanisms that control gasdermin expression, activation, and function is essential for the development of future therapeutics for </span>intestinal disorders.</span></p></div>","PeriodicalId":49546,"journal":{"name":"Seminars in Immunology","volume":"71 ","pages":"Article 101865"},"PeriodicalIF":7.8,"publicationDate":"2024-01-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"139480018","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Susana G. Rodrigues , Schalk van der Merwe , Aleksander Krag , Reiner Wiest
{"title":"Gut-liver axis: Pathophysiological concepts and medical perspective in chronic liver diseases","authors":"Susana G. Rodrigues , Schalk van der Merwe , Aleksander Krag , Reiner Wiest","doi":"10.1016/j.smim.2023.101859","DOIUrl":"https://doi.org/10.1016/j.smim.2023.101859","url":null,"abstract":"","PeriodicalId":49546,"journal":{"name":"Seminars in Immunology","volume":"71 ","pages":"Article 101859"},"PeriodicalIF":7.8,"publicationDate":"2024-01-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.sciencedirect.com/science/article/pii/S1044532323001501/pdfft?md5=5bbaf2ad5c0e43b228181a2f627c2904&pid=1-s2.0-S1044532323001501-main.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"139436035","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Antigen cross-presentation by dendritic cells: A critical axis in cancer immunotherapy","authors":"Christine Moussion, Lélia Delamarre","doi":"10.1016/j.smim.2023.101848","DOIUrl":"https://doi.org/10.1016/j.smim.2023.101848","url":null,"abstract":"<div><p><span>Dendritic cells (DCs) are professional antigen-presenting cells that play a key role in shaping adaptive immunity<span>. DCs have a unique ability to sample their environment, capture and process exogenous antigens into peptides that are then loaded onto major histocompatibility complex class I molecules for presentation to CD8</span></span><sup>+</sup> T cells. This process, called cross-presentation, is essential for initiating and regulating CD8<sup>+</sup><span> T cell responses against tumors and intracellular pathogens<span><span>. In this review, we will discuss the role of DCs in cancer immunity, the molecular mechanisms underlying antigen cross-presentation by DCs, the </span>immunosuppressive factors that limit the efficiency of this process in cancer, and approaches to overcome DC dysfunction and therapeutically promote antitumoral immunity.</span></span></p></div>","PeriodicalId":49546,"journal":{"name":"Seminars in Immunology","volume":"71 ","pages":"Article 101848"},"PeriodicalIF":7.8,"publicationDate":"2023-11-29","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"138454022","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Regulated cell death in neutrophils: From apoptosis to NETosis and pyroptosis","authors":"Léonie Dejas , Karin Santoni , Etienne Meunier , Mohamed Lamkanfi","doi":"10.1016/j.smim.2023.101849","DOIUrl":"10.1016/j.smim.2023.101849","url":null,"abstract":"<div><p>Neutrophils are among the most abundant immune cells, representing about 50%− 70% of all circulating leukocytes in humans. Neutrophils rapidly infiltrate inflamed tissues and play an essential role in host defense against infections. They exert microbicidal activity through a variety of specialized effector mechanisms, including phagocytosis, production of reactive oxygen species, degranulation and release of secretory vesicles containing broad-spectrum antimicrobial factors. In addition to their homeostatic turnover by apoptosis, recent studies have revealed the mechanisms by which neutrophils undergo various forms of regulated cell death. In this review, we will discuss the different modes of regulated cell death that have been described in neutrophils, with a particular emphasis on the current understanding of neutrophil pyroptosis and its role in infections and autoinflammation.</p></div>","PeriodicalId":49546,"journal":{"name":"Seminars in Immunology","volume":"70 ","pages":"Article 101849"},"PeriodicalIF":7.8,"publicationDate":"2023-11-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.sciencedirect.com/science/article/pii/S1044532323001409/pdfft?md5=723dc4d31f3a7c07cb0be749795e9ff2&pid=1-s2.0-S1044532323001409-main.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"71523167","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Introduction to the special issue: Antigen cross-presentation","authors":"Peter van Endert","doi":"10.1016/j.smim.2023.101850","DOIUrl":"10.1016/j.smim.2023.101850","url":null,"abstract":"","PeriodicalId":49546,"journal":{"name":"Seminars in Immunology","volume":"70 ","pages":"Article 101850"},"PeriodicalIF":7.8,"publicationDate":"2023-11-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"72211607","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Mehdi Benamar , Qian Chen , Monica Martinez-Blanco , Talal A. Chatila
{"title":"Regulatory T cells in allergic inflammation","authors":"Mehdi Benamar , Qian Chen , Monica Martinez-Blanco , Talal A. Chatila","doi":"10.1016/j.smim.2023.101847","DOIUrl":"10.1016/j.smim.2023.101847","url":null,"abstract":"<div><p>Regulatory T (Treg) cells maintain immune tolerance to allergens at the environmental interfaces in the airways, skin and gut, marshalling in the process distinct immune regulatory circuits operative in the respective tissues. Treg cells are coordinately mobilized with allergic effector mechanisms in the context of a tissue-protective allergic inflammatory response against parasites, toxins and potentially harmful allergens, serving to both limit the inflammation and promote local tissue repair. Allergic diseases are associated with subverted Treg cell responses whereby a chronic allergic inflammatory environment can skew Treg cells toward pathogenic phenotypes that both perpetuate and aggravate disease. Interruption of Treg cell subversion in chronic allergic inflammatory conditions may thus provide novel therapeutic strategies by re-establishing effective immune regulation.</p></div>","PeriodicalId":49546,"journal":{"name":"Seminars in Immunology","volume":"70 ","pages":"Article 101847"},"PeriodicalIF":7.8,"publicationDate":"2023-10-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"41217820","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Chemical modulation of gasdermin D activity: Therapeutic implications and consequences","authors":"Bowen Zhou, Derek W. Abbott","doi":"10.1016/j.smim.2023.101845","DOIUrl":"10.1016/j.smim.2023.101845","url":null,"abstract":"<div><p>The gasdermin family of proteins are central effectors of the inflammatory, lytic cell death modality known as pyroptosis. Characterized in 2015, the most well-studied member gasdermin D can be proteolyzed, typically by caspases, to generate an active pore-forming N-terminal domain. At least well-studied three pharmacological inhibitors (necrosulfonamide, disulfiram, dimethyl fumarate) since 2018 have been shown to affect gasdermin D activity either through modulation of processing or interference with pore formation. A multitude of murine in vivo studies have since followed. Here, we discuss the current state of research surrounding these three inhibitors, caveats to their use, and a set of guiding principles that researchers should consider when pursuing further studies of gasdermin D inhibition.</p></div>","PeriodicalId":49546,"journal":{"name":"Seminars in Immunology","volume":"70 ","pages":"Article 101845"},"PeriodicalIF":7.8,"publicationDate":"2023-10-08","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"41170523","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Duygu Yazici , Ismail Ogulur , Yagiz Pat , Huseyn Babayev , Elena Barletta , Sena Ardicli , Manal Bel imam , Mengting Huang , Jana Koch , Manru Li , Debbie Maurer , Urszula Radzikowska , Pattraporn Satitsuksanoa , Stephan R. Schneider , Na Sun , Stephan Traidl , Alexandra Wallimann , Sebastian Wawrocki , Damir Zhakparov , Danielle Fehr , Cezmi A. Akdis
{"title":"The epithelial barrier: The gateway to allergic, autoimmune, and metabolic diseases and chronic neuropsychiatric conditions","authors":"Duygu Yazici , Ismail Ogulur , Yagiz Pat , Huseyn Babayev , Elena Barletta , Sena Ardicli , Manal Bel imam , Mengting Huang , Jana Koch , Manru Li , Debbie Maurer , Urszula Radzikowska , Pattraporn Satitsuksanoa , Stephan R. Schneider , Na Sun , Stephan Traidl , Alexandra Wallimann , Sebastian Wawrocki , Damir Zhakparov , Danielle Fehr , Cezmi A. Akdis","doi":"10.1016/j.smim.2023.101846","DOIUrl":"10.1016/j.smim.2023.101846","url":null,"abstract":"<div><p>Since the 1960 s, our health has been compromised by exposure to over 350,000 newly introduced toxic substances, contributing to the current pandemic in allergic, autoimmune and metabolic diseases. The \"Epithelial Barrier Theory\" postulates that these diseases are exacerbated by persistent periepithelial inflammation (epithelitis) triggered by exposure to a wide range of epithelial barrier-damaging substances as well as genetic susceptibility. The epithelial barrier serves as the body's primary physical, chemical, and immunological barrier against external stimuli. A leaky epithelial barrier facilitates the translocation of the microbiome from the surface of the afflicted tissues to interepithelial and even deeper subepithelial locations. In turn, opportunistic bacterial colonization, microbiota dysbiosis, local inflammation and impaired tissue regeneration and remodelling follow. Migration of inflammatory cells to susceptible tissues contributes to damage and inflammation, initiating and aggravating many chronic inflammatory diseases. The objective of this review is to highlight and evaluate recent studies on epithelial physiology and its role in the pathogenesis of chronic diseases in light of the epithelial barrier theory.</p></div>","PeriodicalId":49546,"journal":{"name":"Seminars in Immunology","volume":"70 ","pages":"Article 101846"},"PeriodicalIF":7.8,"publicationDate":"2023-10-04","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"41105647","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}