Applied Microscopy最新文献

Analysis of smart imaging runtime 智能成像运行时间分析

Applied Microscopy Pub Date : 2025-08-14 DOI: 10.1186/s42649-025-00115-5

Thomas Athey, Shashata Sawmya, Yaron Meirovitch, Richard Schalek, Pavel Potocek, Ishaan Chandok, Maurice Peemen, Jeff Lichtman, Aravinthan Samuel, Nir Shavit

引用次数: 0

Junctional microstructure of the non-sticky spiral scaffold in the golden orb web spider, Trichonephila clavata 金球蛛（Trichonephila clavata）非粘性螺旋支架的连接微结构。

Applied Microscopy Pub Date : 2025-07-17 DOI: 10.1186/s42649-025-00114-6

Seung-Min Lee, Myung-Jin Moon

{"title":"Junctional microstructure of the non-sticky spiral scaffold in the golden orb web spider, Trichonephila clavata","authors":"Seung-Min Lee, Myung-Jin Moon","doi":"10.1186/s42649-025-00114-6","DOIUrl":"10.1186/s42649-025-00114-6","url":null,"abstract":"<div><p>The non-sticky spiral silk, which typically serves as a temporary structural component in most orb-weaving spiders, functions as a permanent scaffold in the golden orb-web spider (<i>Trichonephila clavata</i>). Composed of double strands approximately 4 μm in diameter, the non-sticky spiral forms robust extended junctions exceeding 200 μm in radius. The muscular cell layer observed within the pyriform gland facilitates the active extrusion of pyriform fibers and cement, enabling efficient wrapping at the junctions. These robust junctions stand in stark contrast to the loose, droplet-mediated adhesion seen in sticky spirals, allowing the non-sticky spiral to enhance web stability and effectively prevent damage expansion. Furthermore, the non-sticky spiral plays an important role in localized web repair by replicating the original web's loop patterns to restore damaged areas. These findings suggest that the non-sticky spiral stabilizes the wide intervals between radii in the lower hub region, providing enhanced resistance to external forces and repairing structural damages. The results also demonstrate the evolutionary significance of utilizing non-sticky spiral as a permanent component, facilitating the construction and maintenance of large, densely structured orb webs.</p></div>","PeriodicalId":470,"journal":{"name":"Applied Microscopy","volume":"55 1","pages":""},"PeriodicalIF":0.0,"publicationDate":"2025-07-17","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12271046/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144648159","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

引用次数: 0

Studies on PVA/MAA:EA polymer blend films modified by Fe3+ doping Fe3+掺杂改性PVA/MAA:EA聚合物共混膜的研究。

Applied Microscopy Pub Date : 2025-07-07 DOI: 10.1186/s42649-025-00109-3

Neeruganti Obularajugari Gopal, Mahammad Hussain Basha, Ojha Pravakar, Yedurupaka Madhav Kumar

{"title":"Studies on PVA/MAA:EA polymer blend films modified by Fe3+ doping","authors":"Neeruganti Obularajugari Gopal, Mahammad Hussain Basha, Ojha Pravakar, Yedurupaka Madhav Kumar","doi":"10.1186/s42649-025-00109-3","DOIUrl":"10.1186/s42649-025-00109-3","url":null,"abstract":"<div><p>Pristine and Fe (1.0, 2.0, 3.0, 4.0 and 5.0 mol%) doped Polyvinyl alcohol/Methacrylic Acid- Ethyl Acrylate (PVA/MAA:EA) polymer blend films were prepared by solution casting method and characterized by various techniques. TGA analysis validates the occurrence of three distinct weight loss steps attributed to removal of volatile substances from both the surface and interior of the material, as well as the decomposition of the polymer. X-ray diffraction (XRD) investigations confirm a decrease in crystallinity as the dopant concentration increases. Scanning electron microscope (SEM) micrographs show uniform morphology. Fourier transform infrared (FTIR) spectrum exhibits bands characteristic of stretching and bending vibrations of O–H, C–H, C = C and C–O groups and the changes in the spectrum with dopant concentration show the miscibility of dopant with the polymer blend. UV–visible absorption spectra demonstrate the decrease of optical band gap as the concentration of Fe rises and exhibit absorption bands corresponding to the transitions <sup>6</sup>A<sub>1g</sub> → <sup>4</sup>A<sub>1g</sub> and <sup>6</sup>A<sub>1g</sub> → <sup>4</sup>T<sub>2g</sub> of Fe<sup>3+</sup> ions in distorted octahedral symmetry. Electron paramagnetic resonance (EPR) spectra exhibit resonance signals one around g = 2.12 attributed to Fe<sup>3+</sup> ions in the distorted octahedral environment and the other signal around g = 6.8 due to Fe<sup>3+</sup> ions in rhombic symmetry. The number of spins engaged in the resonance as a function of dopant concentration is determined through EPR analysis and the paramagnetic susceptibility is estimated. The conductivity of Fe<sup>3+</sup> ions doped PVA/MAA:EA polymer blend films increases with an increase in Fe<sup>3+</sup> concentration, which is explained in terms of an increase in the amorphous phase due to doping.</p></div>","PeriodicalId":470,"journal":{"name":"Applied Microscopy","volume":"55 1","pages":""},"PeriodicalIF":0.0,"publicationDate":"2025-07-07","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12229975/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144574616","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

引用次数: 0

Advancing atomic electron tomography with neural networks 利用神经网络推进原子电子断层扫描。

Applied Microscopy Pub Date : 2025-06-19 DOI: 10.1186/s42649-025-00113-7

Juhyeok Lee, Yongsoo Yang

引用次数: 0

Technical approaches of 3D reconstruction from protein complex using the mixture of differently stained images: providing suggestive evidence for improving its resolution 利用不同染色图像的混合物从蛋白质复合体中进行三维重建的技术方法：为提高其分辨率提供暗示证据。

Applied Microscopy Pub Date : 2025-05-28 DOI: 10.1186/s42649-025-00111-9

Yoon Ho Park, Myeong Seon Jeong, Gang San Song, Tak gwonbaek, Young Kwan Kim, Hyun Suk Jung

{"title":"Technical approaches of 3D reconstruction from protein complex using the mixture of differently stained images: providing suggestive evidence for improving its resolution","authors":"Yoon Ho Park, Myeong Seon Jeong, Gang San Song, Tak gwonbaek, Young Kwan Kim, Hyun Suk Jung","doi":"10.1186/s42649-025-00111-9","DOIUrl":"10.1186/s42649-025-00111-9","url":null,"abstract":"<div><p>Negative staining electron microscopy remains a valuable tool for structural biology, particularly for initial characterization of large protein complexes. However, the limitations of single staining methods often result in incomplete structural information. Here, we present a novel multi-stain approach for negative staining electron microscopy, applied to the structural analysis of the pyruvate dehydrogenase E2 (PDH E2) complex. By integrating data from three distinct staining agents (uranyl acetate, ammonium phosphotungstate, and ammonium molybdate) we demonstrate significant improvements in structural resolution and detail. Our method improved the resolution from a range of approximately 27–31 Å (observed with individual stains) to about 21.7 Å in the combined dataset. This enhancement facilitated a clearer visualization of the complex’s icosahedral symmetry and allowed for a more precise determination of the overall shape and domain organization of the PDH E2 complex. The multi-stain approach revealed complementary structural information, with each stain highlighting different aspects of the protein complex. Uranyl acetate provided excellent overall contrast, while ammonium phosphotungstate and molybdate offered enhanced visibility of specific structural elements. The integration of these complementary data sets resulted in a more comprehensive structural model. Our findings suggest that this multi-stain negative staining approach can be a powerful tool for enhancing low-resolution structural information of large protein complexes, bridging the gap between initial characterization and high-resolution studies. This method holds promise for improving our understanding of challenging macromolecular assemblies and may serve as a valuable precursor to more advanced structural biology techniques.</p></div>","PeriodicalId":470,"journal":{"name":"Applied Microscopy","volume":"55 1","pages":""},"PeriodicalIF":0.0,"publicationDate":"2025-05-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12119436/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144155345","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

引用次数: 0

Morphological characteristic analysis of unrecorded freshwater diatoms in Korea 韩国未记录淡水硅藻的形态特征分析

Applied Microscopy Pub Date : 2025-05-17 DOI: 10.1186/s42649-025-00112-8

Daeryul Kwon, Kyeong-Eun Yoo, Hyeonjin Cho, Sukmin Yun, Chaehong Park

{"title":"Morphological characteristic analysis of unrecorded freshwater diatoms in Korea","authors":"Daeryul Kwon, Kyeong-Eun Yoo, Hyeonjin Cho, Sukmin Yun, Chaehong Park","doi":"10.1186/s42649-025-00112-8","DOIUrl":"10.1186/s42649-025-00112-8","url":null,"abstract":"<div><p>Diatoms are microalgae with a significant ecological role as primary producers, contributing approximately 20% of global carbon fixation. They exhibit remarkable evolutionary success and biodiversity, with approximately 18,000 species identified globally, including 2,323 species reported in Korea. In this study, we identified 13 unrecorded diatom species from various freshwater environments in Korea, including rivers, streams, reservoirs, and lagoons. Among these, the genera <i>Brachysira</i>, <i>Gomphonella</i>, and <i>Staurophora</i> were recorded for the first time in Korea, expanding the national species list. The unrecorded species included 12 pennate diatoms (<i>Adlafia multnomahii, Encyonema cespitosum, Placoneis symmetrica, Gomphonema incognitum, Rhoicosphenia baltica, Brachysira vitrea, Gomphonella fogedii, Hantzschia psammicola, Hyalosynedra laevigata, Pseudostaurosira parasitica, Tryblionella calida</i>, and <i>Staurophora amphioxys</i>) and one centric diatom (<i>Discostella lacuskarluki</i>). Morphological and ultrastructural analyses were conducted using scanning electron microscopy to characterize these species. This research highlights the biodiversity of Korean diatoms and their potential applications in environmental monitoring and nanotechnology, contributing to the broader understanding of diatom taxonomy and ecology.</p></div>","PeriodicalId":470,"journal":{"name":"Applied Microscopy","volume":"55 1","pages":""},"PeriodicalIF":0.0,"publicationDate":"2025-05-17","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://appmicro.springeropen.com/counter/pdf/10.1186/s42649-025-00112-8","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144073554","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

引用次数: 0

Optical clearing of apple tissues for in vivo imaging of the pathogenic behavior of the fungus Botryosphaeria dothidea on host surfaces 对苹果组织进行光学清除，以在体内成像真菌马铃薯球孢菌在宿主表面的致病行为

Applied Microscopy Pub Date : 2025-05-01 DOI: 10.1186/s42649-025-00110-w

Ki Woo Kim, Eun Woo Park

{"title":"Optical clearing of apple tissues for in vivo imaging of the pathogenic behavior of the fungus Botryosphaeria dothidea on host surfaces","authors":"Ki Woo Kim, Eun Woo Park","doi":"10.1186/s42649-025-00110-w","DOIUrl":"10.1186/s42649-025-00110-w","url":null,"abstract":"<div><p>Optical clearing of apple tissues was performed to observe the pre-penetration behavior of <i>Botryosphaeria dothidea</i>. Mature red fruits and two-year-old twigs were artificially inoculated with the fungal conidia. Fruit epidermis and twig cork tissues were excised and immersed overnight in an ethanol-chloroform solution amended with trichloroacetic acid. Lactophenol cotton blue was used to stain the fungus on the host surfaces. The morphology and behavior of the inoculated <i>B. dothidea</i> could be clearly observed in the two types of optically cleared specimens. The conidia showed either monopolar or bipolar germination, leading to the emergence of germ tubes from one or both conidial ends. Conidia formed appressoria at the terminal ends of germ tubes. They appeared round, hook-shaped, and irregular-shaped in two-dimensional light micrographs. Multiple appressoria were observed on the suberized phellem cells in twig lenticels. These results suggest that the optical clearing technique and fungal staining were effective in partially decolorizing apple tissues and revealing the fungal structures on the host surfaces.\u0000</p></div>","PeriodicalId":470,"journal":{"name":"Applied Microscopy","volume":"55 1","pages":""},"PeriodicalIF":0.0,"publicationDate":"2025-05-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://appmicro.springeropen.com/counter/pdf/10.1186/s42649-025-00110-w","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143892747","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

引用次数: 0

Specimen preparation for X-ray micro-computed tomography of forest pests 森林害虫的x射线显微计算机断层扫描试样制备

Applied Microscopy Pub Date : 2025-04-02 DOI: 10.1186/s42649-025-00108-4

Eun Jung Ahn, Ki Woo Kim

{"title":"Specimen preparation for X-ray micro-computed tomography of forest pests","authors":"Eun Jung Ahn, Ki Woo Kim","doi":"10.1186/s42649-025-00108-4","DOIUrl":"10.1186/s42649-025-00108-4","url":null,"abstract":"<div><p>X-ray micro-computed tomography (XCT) is an X-ray-based three-dimensional (3D) imaging technique that enables non-destructive imaging of both external and internal structures. It is widely used for studying biological specimens such as animals and plants. In this review, we discuss various specimen preparation methods for the technique, particularly focusing on forest pests, with six representative cases. Specimen preparation methods for forest pests can be broadly categorized into three groups based on mounting types: (i) simple mounting, (ii) liquid-cell mounting, and (iii) dry-cell mounting. The simple mounting method is particularly suitable for adult beetles due to their exoskeleton. The dehydration process minimizes specimen movement during scanning, ensuring better imaging quality. In the case of liquid-cell mounting, the specimen is immersed in a liquid medium for scanning, which effectively preserves the soft tissues of larvae and pupae. The dry-cell mounting does not involve fixation or dehydration and is particularly useful for analyzing immobilized specimens. To enhance the quality of 3D images, selecting an appropriate preparation method is essential. Since forest pests display varying sizes and types, the choice of preparation method should be based on the specific characteristics of the specimens of interest and research objectives. This review provides valuable insights for researchers and practitioners seeking to identify the most suitable and effective mounting method for XCT scanning of forest pests.\u0000</p></div>","PeriodicalId":470,"journal":{"name":"Applied Microscopy","volume":"55 1","pages":""},"PeriodicalIF":0.0,"publicationDate":"2025-04-02","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://appmicro.springeropen.com/counter/pdf/10.1186/s42649-025-00108-4","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143749156","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

引用次数: 0

Phase transition of amorphous cobalt hydroxide to crystalline cobalt oxides by electron-beam irradiation 电子束辐照下无定形氢氧化钴向结晶钴氧化物的相变

Applied Microscopy Pub Date : 2025-03-07 DOI: 10.1186/s42649-025-00107-5

Minjeong Lee, Hye Seong Jang, Gayoung Yoon, Gyeong Hee Ryu

{"title":"Phase transition of amorphous cobalt hydroxide to crystalline cobalt oxides by electron-beam irradiation","authors":"Minjeong Lee, Hye Seong Jang, Gayoung Yoon, Gyeong Hee Ryu","doi":"10.1186/s42649-025-00107-5","DOIUrl":"10.1186/s42649-025-00107-5","url":null,"abstract":"<div><p>Transmission electron microscopy (TEM), which can analyze the shape and crystallinity of materials as well as the chemical bonding of ions and the states of elements, operates at different accelerating voltages depending on the type of specimen analyzed and the analysis area. Electron-beam irradiation can be used to induce structural transitions and crystallization of materials. Therefore, studies on phase transition using electron beams have been frequently conducted. Cobalt oxides, including cobalt hydroxides, have various phases and crystal structures, depending on their stoichiometric compositions. Specific synthesis methods can be used to synthesize these at low dimensions, in addition to large nanosheet structures. In this study, the crystallization and phase transition of amorphous cobalt hydroxide nanosheets induced by continuous electron-beam irradiation were analyzed using high-resolution TEM (HR-TEM). The synthesized cobalt hydroxide nanosheets were partially converted into cobalt oxides, and the transferred area expanded as the irradiation time increased. Under 300 kV of accelerating voltage, the transition to cubic cobalt oxides was dominant, suggesting a frequent transitional behavior of amorphous metal hydroxides upon electron-beam irradiation.\u0000</p></div>","PeriodicalId":470,"journal":{"name":"Applied Microscopy","volume":"55 1","pages":""},"PeriodicalIF":0.0,"publicationDate":"2025-03-07","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://appmicro.springeropen.com/counter/pdf/10.1186/s42649-025-00107-5","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143564513","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

引用次数: 0

Bispecific antibodies and CLEM: an analytical approach to advanced cell imaging for therapeutic strategies 双特异性抗体和CLEM：用于治疗策略的先进细胞成像分析方法

Applied Microscopy Pub Date : 2025-01-20 DOI: 10.1186/s42649-024-00106-y

Han-ul Kim, Young Kwan Kim

{"title":"Bispecific antibodies and CLEM: an analytical approach to advanced cell imaging for therapeutic strategies","authors":"Han-ul Kim, Young Kwan Kim","doi":"10.1186/s42649-024-00106-y","DOIUrl":"10.1186/s42649-024-00106-y","url":null,"abstract":"<div><p>The development of bispecific antibodies (BsAbs) represents a significant advancement in therapeutic antibody design, enabling the simultaneous targeting of two different antigens. This dual-targeting capability enhances therapeutic efficacy, particularly in complex diseases like cancer, where tumor heterogeneity presents a significant challenge for traditional treatments. By bridging two distinct pathways, BsAbs can improve specificity and minimize off-target effects, making them invaluable in therapeutic contexts. Integrating advanced imaging techniques, particularly Correlative Light and Electron Microscopy (CLEM), offers a unique opportunity to visualize the dynamic interactions of BsAbs within cellular environments. CLEM combines the strengths of optical and electron microscopy, allowing researchers to observe real-time antibody-antigen interactions at nanoscale resolution. This synergy not only deepens our understanding of BsAbs’ mechanisms of action but also provides critical insights into their spatial distribution, binding kinetics, and functional dynamics in live cells. In this review, the integration of BsAbs and CLEM paves the way for targeted therapeutic strategies, fostering the development of more effective treatments that can adapt to the complexities of disease pathology.</p></div>","PeriodicalId":470,"journal":{"name":"Applied Microscopy","volume":"55 1","pages":""},"PeriodicalIF":0.0,"publicationDate":"2025-01-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://appmicro.springeropen.com/counter/pdf/10.1186/s42649-024-00106-y","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142994997","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

引用次数: 0