Biotechnology Reports最新文献

{"title":"Agrowaste-carbon and carbon-based nanocomposites for endocrine disruptive cationic dyes removal: A critical review","authors":"Adewumi O. Dada ,&nbsp;Adejumoke A. Inyinbor ,&nbsp;Bukola T. Atunwa ,&nbsp;Spandana Gonuguntla ,&nbsp;Olugbenga S. Bello ,&nbsp;Folahan A. Adekola ,&nbsp;Ujjwal Pal","doi":"10.1016/j.btre.2024.e00860","DOIUrl":"10.1016/j.btre.2024.e00860","url":null,"abstract":"<div><div>Dyes are considered to be pollutants that pose a considerable worldwide health risk, as they have been discovered as agents that affect the endocrine system. Adsorption is the most commonly used method for removing different substances since it is sustainable, flexible, affordable, and easy to use. Researchers have investigated the usage of agro-waste-based adsorbents that are ecologically friendly for the process of adsorption. This research has emphasized the potential of these adsorbents in developing carbon-based nanocomposites. Improved surface functionalization, great compatibility, and flexibility are beneficial uniqueness of carbon-based nanocomposites as well as a wide variety of applications. As a result, they are highly successful in removing cationic dyes. This paper specifically examines the environmentally friendly usage of activated carbons obtained from agricultural waste and the development of carbon-based-nanocomposites to adsorb positively charged dyes. Additionally, it offers an in-depth investigation of various cationic dyes, operating parameters, adsorption isotherms, kinetics, processes, and thermodynamic investigations. Further research is necessary to determine the effectiveness of carbon-based nanocomposites in removing new endocrine-disrupting pollutants. Additionally, these nanocomposites have the potential to be widely used in treating industrial effluents.</div></div>","PeriodicalId":38117,"journal":{"name":"Biotechnology Reports","volume":"44 ","pages":"Article e00860"},"PeriodicalIF":0.0,"publicationDate":"2024-09-15","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142421927","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Interaction and effects of temperature preference under a controlled environment on the diversity and abundance of the microbiome in Lutzomyia longipalpis (Diptera: Psychodidae)","authors":"Daniela Duque-Granda ,&nbsp;Rafael José Vivero-Gómez ,&nbsp;Howard Junca ,&nbsp;Gloria Cadavid-Restrepo ,&nbsp;Claudia Ximena Moreno-Herrera","doi":"10.1016/j.btre.2024.e00857","DOIUrl":"10.1016/j.btre.2024.e00857","url":null,"abstract":"<div><p>Characterization of the temperature effects on the abundance and richness of the microbiota of <em>Lutzomyia longipalpis</em>, insect vector of <em>Leishmania infantum</em> in America, is an aspect of pivotal importance to understand the interactions between temperature, bacteria, and <em>Leishmania</em> infection. We developed and used a customized device with a temperature gradient (21–34 °C) to assess the temperature preferences of wild females of <em>Lu. longipalpis</em> collected in a rural area (Ricaurte, Cundinamarca, Colombia). Each replicate consisted of 50 females exposed to the gradient for an hour. At the end of the exposure time, insects were collected and separated by the temperature ranges selected varying from 21 °C to 34 °C. They were organized in 17 pools from which total DNA extracts were obtained, and samples were subjected to 16S rRNA amplicon sequencing analyzes. The most abundant phyla across the different temperature ranges were Proteobacteria (17.22–90.73 %), Firmicutes (5.99–77.21 %) and Actinobacteria (1.56–59.85 %). Results also showed an abundance (30 % to 57.36 %) of <em>Pseudomonas</em> (mainly at temperatures of 21–29 °C and 34 °C) that decreased to 6.55 %-13.20 % at temperatures of 31–33 °C, while <em>Bacillus</em> increase its abundance to 67.24 % at 29–33 °C. <em>Serratia</em> also had a greater representation (49.79 %), specifically in sand flies recovered at 25–27 °C. No significant differences were found at α-diversity level when comparing richness using the Shannon-Wiener, Simpson, and Chao1 indices, while <em>β</em>-diversity differences were found using the Bray-Curtis index (F-value of 3.5073, p-value &lt; 0.013, R-squared of 0,4889), especially in the groups of <em>Lu. longipalpis</em> associated at higher temperatures (29–33 °C). It was also possible to detect the presence of endosymbionts such as <em>Spiroplasma</em> and <em>Arsenophonus</em> in the range of 29–33 °C. <em>Rickettsia</em> was only detected in <em>Lu. longipalpis</em> sand flies recovered between 25–27 °C. It was possible to characterize <em>Lu. longipalpis</em> microbiota in response to intraspecific temperature preferences and observe changes in bacterial communities and endosymbionts at different ranges of said environmental variable, which may be important in its vector competence and environmental plasticity to adapt to new climate change scenarios.</p></div>","PeriodicalId":38117,"journal":{"name":"Biotechnology Reports","volume":"44 ","pages":"Article e00857"},"PeriodicalIF":0.0,"publicationDate":"2024-09-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.sciencedirect.com/science/article/pii/S2215017X24000304/pdfft?md5=918bdf559ecc49f6244d333925cd7bac&pid=1-s2.0-S2215017X24000304-main.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142238359","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Evaluation of seed oil from Hura crepitans, Trichosanthes cucumerina and Thevetia nerifolia","authors":"Esther Anuoluwapo Ominowa ,&nbsp;Adebisi Olonisakin ,&nbsp;Oluwabunmi Peace Femi-Oloye ,&nbsp;Charles Ayodeji Osunla ,&nbsp;Femi Francis Oloye","doi":"10.1016/j.btre.2024.e00858","DOIUrl":"10.1016/j.btre.2024.e00858","url":null,"abstract":"<div><p>The oil contents and fatty acid composition of three non-edible seed oils extracted using Soxhlet extraction with hexane as the solvent were presented. The physical and chemical properties of the oils were determined from which cetane number, biofuel potential, higher heating values, and antimicrobial activities were assessed. The dominant fatty acids were 49 % linoleic acid, 37 % pentadecenoic acid, and 38 % cis-10-heptadecenenoic acid for <em>Hura crepitans</em> (HC), <em>Thevetia nerifolia</em> (TN) and <em>Trichosanthes cucumerina</em> (TC), respectively. The seed oils were majorly unsaturated, with HC having the highest degree of unsaturation. Acid value, saponification value, iodine value, and free fatty acids were low compared to many reported values in literature. The cetane values were generally high because the oils have a reasonable amount of saturated fatty acid, with TN having the highest cetane number. The low iodine value and saponification value make the biofuel potential and higher heating value to be high with TN having the highest in both and thus the best seed oil for biofuel. However, TN and HC have no antimicrobial activity to <em>Klebsiella pneumoniae</em> (gram -ve), <em>Staphylococcus aureus</em> (gram +ve), <em>Escherichia coli</em> (gram -ve), <em>Bacillus subtilis</em>, Enterobacter aerogenes, <em>Candida albican, Rhizopus stolonifer, Fusarium Solani, Aspergillus flavus</em> and <em>Candida tropicalis</em>, while TC has broad spectrum of activity against all tested bacteria and fungi, except Klebsiella pneumoniae.</p></div>","PeriodicalId":38117,"journal":{"name":"Biotechnology Reports","volume":"44 ","pages":"Article e00858"},"PeriodicalIF":0.0,"publicationDate":"2024-09-11","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.sciencedirect.com/science/article/pii/S2215017X24000316/pdfft?md5=2b9a1bc835acad2e8dd679d358e40541&pid=1-s2.0-S2215017X24000316-main.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142229277","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Eco-smart biocontrol strategies utilizing potent microbes for sustainable management of phytopathogenic diseases","authors":"Ihtisham Ul Haq ,&nbsp;Kashif Rahim ,&nbsp;Galal Yahya ,&nbsp;Bushra Ijaz ,&nbsp;Sajida Maryam ,&nbsp;Najeeba Parre Paker","doi":"10.1016/j.btre.2024.e00859","DOIUrl":"10.1016/j.btre.2024.e00859","url":null,"abstract":"<div><p>Plants have an impact on the economy because they are used in the food and medical industries. Plants are a source of macro- and micronutrients for the health of humans and animals; however, the rise in microbial diseases has put plant health and yield at risk. Because there are insufficient controls, microbial infections annually impact approximately 25 % of the world's plant crops. Alternative strategies, such as biocontrol, are required to fight these illnesses. This review discusses the potential uses of recently discovered microorganisms because they are safe, effective, and unlikely to cause drug resistance. They have no negative effects on soil microbiology or the environment because they are environmentally benign. Biological control enhances indigenous microbiomes by reducing bacterial wilt, brown blotch, fire blight, and crown gall. More research is required to make these biocontrol agents more stable, effective, and less toxic before they can be used in commercial settings.</p></div>","PeriodicalId":38117,"journal":{"name":"Biotechnology Reports","volume":"44 ","pages":"Article e00859"},"PeriodicalIF":0.0,"publicationDate":"2024-09-10","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.sciencedirect.com/science/article/pii/S2215017X24000328/pdfft?md5=021705d5b01889500b27112c5cea23a3&pid=1-s2.0-S2215017X24000328-main.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142168445","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Genetically surface-modified Escherichia coli outer membrane vesicles targeting MUC1 antigen in cancer cells","authors":"Sedthawut Laotee ,&nbsp;Wanatchaporn Arunmanee","doi":"10.1016/j.btre.2024.e00854","DOIUrl":"10.1016/j.btre.2024.e00854","url":null,"abstract":"<div><p>Outer membrane vesicles (OMVs), non-replicating spherical liposomes derived from Gram-negative bacteria, are a promising vaccine platform and multifunctional delivery systems. Their ability to be modified via genetic engineering for the incorporation and display of heterologous proteins enhances their functionality. In this study, we demonstrated a bio-ligation approach to display single-chain variable fragments (scFv) on the OMV surface using the SpyTag/SpyCatcher system. SpyTag-fused scFv, expressed by mammalian cells, bound to OMVs with SpyCatcher-fused Lpp'OmpA after a simple incubation. Biophysical analysis indicated that the conjugated OMVs maintained their physicochemical properties. We used an scFv targeting mucin 1 protein (MUC1) for specific cell targeting. Confocal microscopy revealed that conjugated OMVs specifically bound to and were internalized by MUC1-presenting cells, but not by MUC1-deficient cells. In conclusion, this rapid and efficient bio-ligation system facilitates the display of functional scFv on OMV surfaces, offering a promising approach for targeted delivery to MUC1-expressing cancer cells.</p></div>","PeriodicalId":38117,"journal":{"name":"Biotechnology Reports","volume":"44 ","pages":"Article e00854"},"PeriodicalIF":0.0,"publicationDate":"2024-09-03","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.sciencedirect.com/science/article/pii/S2215017X24000274/pdfft?md5=f5efc7af290ccba0cbc5213a769d0654&pid=1-s2.0-S2215017X24000274-main.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142149496","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Erratum regarding missing Declaration of Competing Interest statements in previously published article","authors":"","doi":"10.1016/j.btre.2024.e00850","DOIUrl":"10.1016/j.btre.2024.e00850","url":null,"abstract":"","PeriodicalId":38117,"journal":{"name":"Biotechnology Reports","volume":"43 ","pages":"Article e00850"},"PeriodicalIF":0.0,"publicationDate":"2024-09-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.sciencedirect.com/science/article/pii/S2215017X24000237/pdfft?md5=3494a9bffb4bded9762c4b2f82bf90f9&pid=1-s2.0-S2215017X24000237-main.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142128215","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Antarctic Streptomyces: Promising biocontrol agents for combating Fusarium oxysporum f. sp. cubense","authors":"Jeffrey Vargas Perez ,&nbsp;Lizette Serrano ,&nbsp;Rafael Viteri ,&nbsp;Daynet Sosa ,&nbsp;Christian A. Romero ,&nbsp;Nardy Diez","doi":"10.1016/j.btre.2024.e00852","DOIUrl":"10.1016/j.btre.2024.e00852","url":null,"abstract":"<div><p>Fusarium wilt of Banana (FWB) caused by <em>Fusarium oxysporum</em> f. sp. <em>cubense</em> (Foc) poses a significant threat to the banana industry, with current inadequate control measures. This study evaluated the antifungal potential of nine <em>Streptomyces</em> strains isolated from Antarctic soil samples, using Casein-Starch media to stimulate the production of antifungal compounds. The inhibition spectrum against Foc was assessed under laboratory conditions using the well diffusion on Mueller-Hinton agar, with antifungal activity measured in arbitrary units (AU/mL) and minimum inhibitory concentration (MIC) tested using ethyl acetate extracts. Among the nine isolates, K6 and E7 were closely related to <em>Streptomyces polyrhachis</em> and <em>Streptomyces fildesensis</em>, exhibited significant antifungal activity, with K6 and E7 showing 320 and 80 AU/mL, and MIC values of 250 and &gt;500 ppm, respectively. These findings highlight K6 and E7 as potential biocontrol agents against Foc, offering new avenues for sustainable Fusarium wilt management in banana cultivation.</p></div>","PeriodicalId":38117,"journal":{"name":"Biotechnology Reports","volume":"43 ","pages":"Article e00852"},"PeriodicalIF":0.0,"publicationDate":"2024-09-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.sciencedirect.com/science/article/pii/S2215017X24000250/pdfft?md5=1b44434fa84a60443a329e1137530153&pid=1-s2.0-S2215017X24000250-main.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142098757","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Enhancing sustainability in the production of palm oil: creative monitoring methods using YOLOv7 and YOLOv8 for effective plantation management","authors":"Istiyak Mudassir Shaikh ,&nbsp;Mohammad Nishat Akhtar ,&nbsp;Abdul Aabid ,&nbsp;Omar Shabbir Ahmed","doi":"10.1016/j.btre.2024.e00853","DOIUrl":"10.1016/j.btre.2024.e00853","url":null,"abstract":"<div><p>The You Only Look Once (YOLO) deep learning model iterations—YOLOv7–YOLOv8—were put through a rigorous evaluation process to see how well they could recognize oil palm plants. Precision, recall, F1-score, and detection time metrics are analyzed for a variety of configurations, including YOLOv7x, YOLOv7-W6, YOLOv7-D6, YOLOv8s, YOLOv8n, YOLOv8m, YOLOv8l, and YOLOv8x. YOLO label v1.2.1 was used to label a dataset of 80,486 images for training, and 482 drone-captured images, including 5,233 images of oil palms, were used for testing the models. The YOLOv8 series showed notable advancements; with 99.31 %, YOLOv8m obtained the greatest F1-score, signifying the highest detection accuracy. Furthermore, YOLOv8s showed a notable decrease in detection times, improving its suitability for comprehensive environmental surveys and in-the-moment monitoring. Precise identification of oil palm trees is beneficial for improved resource management and less environmental effect; this supports the use of these models in conjunction with drone and satellite imaging technologies for agricultural economic sustainability and optimal crop management.</p></div>","PeriodicalId":38117,"journal":{"name":"Biotechnology Reports","volume":"44 ","pages":"Article e00853"},"PeriodicalIF":0.0,"publicationDate":"2024-08-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.sciencedirect.com/science/article/pii/S2215017X24000262/pdfft?md5=4fc6799c82ae9c86555710c14c13266b&pid=1-s2.0-S2215017X24000262-main.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142130066","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"A fusion protein designed for soluble expression, rapid purification, and enhanced stability of parasporin-2 with potential therapeutic applications","authors":"Monrudee Srisaisap ,&nbsp;Thanya Suwankhajit ,&nbsp;Panadda Boonserm","doi":"10.1016/j.btre.2024.e00851","DOIUrl":"10.1016/j.btre.2024.e00851","url":null,"abstract":"<div><p><em>Bacillus thuringiensis</em> parasporin-2 (PS2Aa1 or Mpp46Aa1) selectively destroys human cancer cells, making it a promising anticancer agent. PS2Aa1 protoxin expression in <em>Escherichia coli</em> typically results in inclusion bodies that must be solubilized and digested by proteinase K to become active. Here, maltose-binding protein (MBP) was fused to the N-terminus of PS2Aa1, either full-length (MBP-fPS2) or truncated (MBP-tPS2), to increase soluble protein expression in <em>E. coli</em> and avoid solubilization and proteolytic activation. Soluble MBP-fPS2 and MBD-tPS2 proteins were produced in <em>E. coli</em> and purified with endotoxin levels below 1 EU/μg. MBP-fPS2 was cytotoxic against T cell leukemia MOLT-4 and Jurkat cell lines after proteinase-K digestion. However, MBP-tPS2 was cytotoxic immediately without MBP tag removal or activation. MBP-tPS2′s thermal stability also makes it appropriate for bioproduction and therapeutic applications.</p></div>","PeriodicalId":38117,"journal":{"name":"Biotechnology Reports","volume":"43 ","pages":"Article e00851"},"PeriodicalIF":0.0,"publicationDate":"2024-08-05","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.sciencedirect.com/science/article/pii/S2215017X24000249/pdfft?md5=0a5deb261e169fd6c41fb525c3a27dd7&pid=1-s2.0-S2215017X24000249-main.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141963307","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Pressure-driven membrane processes for the recovery and recycling of deep eutectic solvents: A seaweed biorefinery case study.","authors":"Oscar M. Elizondo Sada ,&nbsp;Isa S.A. Hiemstra ,&nbsp;Nattawan Chorhirankul ,&nbsp;Michel Eppink ,&nbsp;Rene H. Wijffels ,&nbsp;Anja E.M. Janssen ,&nbsp;Antoinette Kazbar","doi":"10.1016/j.btre.2024.e00849","DOIUrl":"https://doi.org/10.1016/j.btre.2024.e00849","url":null,"abstract":"<div><p>Deep eutectic solvents (DES) are green alternatives for conventional solvents. They have gained attention for their potential to extract valuable compounds from biomass, such as seaweed. In this framework, a case study was developed to assess the feasibility of pressure-driven membrane processes as an efficient tool for the recovery of deep eutectic solvents and targeted biomolecules. For this purpose, a mixture composed of the DES choline chloride – ethylene glycol (ChCl-EG) 1:2, water and alginate was made to mimic a DES extraction from seaweed. An integrated separation process design was proposed where ultrafiltration-diafiltration-nanofiltration (UF-DF-NF) was coupled. UF and DF were found to be effective for the separation of alginate with an 85 % yield. DES was likewise recovered by 93 %, proving the membrane filtrations’ technical feasibility. The NF performance to separate the DES from the water, for its recycling, laid by a 45 %-50 % retention and a final concentrated DES solution of 18 %(v/v).</p></div>","PeriodicalId":38117,"journal":{"name":"Biotechnology Reports","volume":"43 ","pages":"Article e00849"},"PeriodicalIF":0.0,"publicationDate":"2024-06-25","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.sciencedirect.com/science/article/pii/S2215017X24000225/pdfft?md5=9d8e3de09fb53a8a62f7c382f4637951&pid=1-s2.0-S2215017X24000225-main.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141540804","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}