World journal of microbiology & biotechnology最新文献

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Efficient production of polyhydroxybutyrate using lignocellulosic biomass derived from oil palm trunks by the inhibitor-tolerant strain Burkholderia ambifaria E5-3. 耐抑制剂菌株 Burkholderia ambifaria E5-3 利用从油棕树干提取的木质纤维素生物质高效生产聚羟基丁酸。
IF 4 3区 生物学
World journal of microbiology & biotechnology Pub Date : 2024-06-13 DOI: 10.1007/s11274-024-04041-8
Takamitsu Arai, Shimpei Aikawa, Kumar Sudesh, Wichittra Arai, Nurul Fazita Mohammad Rawi, Cheu Peng Peng Leh, Mohamad Haafiz Mohamad Kassim, Guan Seng Tay, Akihiko Kosugi
{"title":"Efficient production of polyhydroxybutyrate using lignocellulosic biomass derived from oil palm trunks by the inhibitor-tolerant strain Burkholderia ambifaria E5-3.","authors":"Takamitsu Arai, Shimpei Aikawa, Kumar Sudesh, Wichittra Arai, Nurul Fazita Mohammad Rawi, Cheu Peng Peng Leh, Mohamad Haafiz Mohamad Kassim, Guan Seng Tay, Akihiko Kosugi","doi":"10.1007/s11274-024-04041-8","DOIUrl":"10.1007/s11274-024-04041-8","url":null,"abstract":"<p><p>Lignocellulosic biomass is a valuable, renewable substrate for the synthesis of polyhydroxybutyrate (PHB), an ecofriendly biopolymer. In this study, bacterial strain E5-3 was isolated from soil in Japan; it was identified as Burkholderia ambifaria strain E5-3 by 16 S rRNA gene sequencing. The strain showed optimal growth at 37 °C with an initial pH of 9. It demonstrated diverse metabolic ability, processing a broad range of carbon substrates, including xylose, glucose, sucrose, glycerol, cellobiose, and, notably, palm oil. Palm oil induced the highest cellular growth, with a PHB content of 65% wt. The strain exhibited inherent tolerance to potential fermentation inhibitors derived from lignocellulosic hydrolysate, withstanding 3 g/L 5-hydroxymethylfurfural and 1.25 g/L acetic acid. Employing a fed-batch fermentation strategy with a combination of glucose, xylose, and cellobiose resulted in PHB production 2.7-times that in traditional batch fermentation. The use of oil palm trunk hydrolysate, without inhibitor pretreatment, in a fed-batch fermentation setup led to significant cell growth with a PHB content of 45% wt, equivalent to 10 g/L. The physicochemical attributes of xylose-derived PHB produced by strain E5-3 included a molecular weight of 722 kDa, a number-average molecular weight of 191 kDa, and a polydispersity index of 3.78. The amorphous structure of this PHB displayed a glass transition temperature of 4.59 °C, while its crystalline counterpart had a melting point of 171.03 °C. This research highlights the potential of lignocellulosic feedstocks, especially oil palm trunk hydrolysate, for PHB production through fed-batch fermentation by B. ambifaria strain E5-3, which has high inhibitor tolerance.</p>","PeriodicalId":23703,"journal":{"name":"World journal of microbiology & biotechnology","volume":null,"pages":null},"PeriodicalIF":4.0,"publicationDate":"2024-06-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141311935","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Research progress on biosynthesis of erythritol and multi-dimensional optimization of production strategies. 赤藓糖醇生物合成及多维优化生产策略的研究进展。
IF 4 3区 生物学
World journal of microbiology & biotechnology Pub Date : 2024-06-13 DOI: 10.1007/s11274-024-04043-6
Meng Li, Zifu Ni, Zhongzeng Li, Yanli Yin, Jianguang Liu, Dapeng Wu, Zhongke Sun, Le Wang
{"title":"Research progress on biosynthesis of erythritol and multi-dimensional optimization of production strategies.","authors":"Meng Li, Zifu Ni, Zhongzeng Li, Yanli Yin, Jianguang Liu, Dapeng Wu, Zhongke Sun, Le Wang","doi":"10.1007/s11274-024-04043-6","DOIUrl":"10.1007/s11274-024-04043-6","url":null,"abstract":"<p><p>Erythritol, as a new type of natural sweetener, has been widely used in food, medical, cosmetics, pharmaceutical and other fields due to its unique physical and chemical properties and physiological functions. In recent years, with the continuous development of strategies such as synthetic biology, metabolic engineering, omics-based systems biology and high-throughput screening technology, people's understanding of the erythritol biosynthesis pathway has gradually deepened, and microbial cell factories with independent modification capabilities have been successfully constructed. In this review, the cheap feedstocks for erythritol synthesis are introduced in detail, the environmental factors affecting the synthesis of erythritol and its regulatory mechanism are described, and the tools and strategies of metabolic engineering involved in erythritol synthesis are summarized. In addition, the study of erythritol derivatives is helpful in expanding its application field. Finally, the challenges that hinder the effective production of erythritol are discussed, which lay a foundation for the green, efficient and sustainable production of erythritol in the future and breaking through the bottleneck of production.</p>","PeriodicalId":23703,"journal":{"name":"World journal of microbiology & biotechnology","volume":null,"pages":null},"PeriodicalIF":4.0,"publicationDate":"2024-06-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141311937","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Pollution pressure drives microbial assemblages that improve the phytoremediation potential of heavy metals by Ricinus communis. 污染压力促使微生物群落提高蓖麻对重金属的植物修复潜力。
IF 4 3区 生物学
World journal of microbiology & biotechnology Pub Date : 2024-06-13 DOI: 10.1007/s11274-024-04025-8
Daniela Rubio-Noguez, Luz Breton-Deval, Ilse Salinas-Peralta, Katy Juárez, Leopoldo Galicia
{"title":"Pollution pressure drives microbial assemblages that improve the phytoremediation potential of heavy metals by Ricinus communis.","authors":"Daniela Rubio-Noguez, Luz Breton-Deval, Ilse Salinas-Peralta, Katy Juárez, Leopoldo Galicia","doi":"10.1007/s11274-024-04025-8","DOIUrl":"10.1007/s11274-024-04025-8","url":null,"abstract":"<p><p>Due to the rapid expansion of industrial activity, soil pollution has intensified. Plants growing in these polluted areas have developed a rhizobiome uniquely and specially adapted to thrive in such environments. However, it remains uncertain whether pollution acts as a sufficiently selective force to shape the rhizobiome, and whether these adaptations endure over time, potentially aiding in long-term phytoremediation. Therefore, in the present study, we aimed to compare whether the microbiome associated with roots from plants germinated in polluted riverbanks will improve the phytoremediation of Cd and Pb under mesocosm experiments compared with plants germinating in a greenhouse. The experimental design was a factorial 2 × 2, i.e., the origin of the plant and the presence or absence of 100 mg/L of Cd and 1000 mg/L of Pb. Our results showed that plants germinated in polluted riverbanks have the capacity to accumulate twice the amount of Pb and Cd during mesocosm experiments. The metagenomic analysis showed that plants from the river exposed to heavy metals at the end of mesocosm experiments were rich in Rhizobium sp. AC44/96 and Enterobacter sp. EA-1, Enterobacter soli, Pantoea rwandensis, Pantoea endophytica. In addition, those plants were uniquely associated with Rhizobium grahamii, which likely contributed to the differences in the levels of phytoremediation achieved. Furthermore, the functional analysis revealed an augmented functional potential related to hormones, metallothioneins, dismutases, and reductases; meanwhile, the plants germinated in the greenhouse showed an unspecific strategy to exceed heavy metal stress. In conclusion, pollution pressure drives stable microbial assemblages, which could be used in future phytostabilization and phytoremediation experiments.</p>","PeriodicalId":23703,"journal":{"name":"World journal of microbiology & biotechnology","volume":null,"pages":null},"PeriodicalIF":4.0,"publicationDate":"2024-06-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11169050/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141311936","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Efficient methane production from agro-industrial residues using anaerobic fungal-rich consortia. 利用富含厌氧真菌的联合体从农用工业残留物中高效生产甲烷。
IF 4 3区 生物学
World journal of microbiology & biotechnology Pub Date : 2024-06-12 DOI: 10.1007/s11274-024-04050-7
Nitiya Thongbunrod, Pawinee Chaiprasert
{"title":"Efficient methane production from agro-industrial residues using anaerobic fungal-rich consortia.","authors":"Nitiya Thongbunrod, Pawinee Chaiprasert","doi":"10.1007/s11274-024-04050-7","DOIUrl":"10.1007/s11274-024-04050-7","url":null,"abstract":"<p><p>Anaerobic digestion (AD) emerges as a pivotal technique in climate change mitigation, transforming organic materials into biogas, a renewable energy form. This process significantly impacts energy production and waste management, influencing greenhouse gas emissions. Traditional research has largely focused on anaerobic bacteria and methanogens for methane production. However, the potential of anaerobic lignocellulolytic fungi for degrading lignocellulosic biomass remains less explored. In this study, buffalo rumen inocula were enriched and acclimatized to improve lignocellulolytic hydrolysis activity. Two consortia were established: the anaerobic fungi consortium (AFC), selectively enriched for fungi, and the anaerobic lignocellulolytic microbial consortium (ALMC). The consortia were utilized to create five distinct microbial cocktails-AF0, AF20, AF50, AF80, and AF100. These cocktails were formulated based on varying of AFC and ALMC by weights (w/w). Methane production from each cocktail of lignocellulosic biomasses (cassava pulp and oil palm residues) was evaluated. The highest methane yields of CP, EFB, and MFB were obtained at 337, 215, and 54 mL/g VS, respectively. Cocktails containing a mix of anaerobic fungi, hydrolytic bacteria (Sphingobacterium sp.), syntrophic bacteria (Sphaerochaeta sp.), and hydrogenotrophic methanogens produced 2.1-2.6 times higher methane in cassava pulp and 1.1-1.2 times in oil palm empty fruit bunch compared to AF0. All cocktails effectively produced methane from oil palm empty fruit bunch due to its lipid content. However, methane production ceased after 3 days when oil palm mesocarp fiber was used, due to long-chain fatty acid accumulation. Anaerobic fungi consortia showed effective lignocellulosic and starchy biomass degradation without inhibition due to organic acid accumulation. These findings underscore the potential of tailored microbial cocktails for enhancing methane production from diverse lignocellulosic substrates.</p>","PeriodicalId":23703,"journal":{"name":"World journal of microbiology & biotechnology","volume":null,"pages":null},"PeriodicalIF":4.0,"publicationDate":"2024-06-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141306989","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Optimizing conditions of mycelial inoculum immobilized in Ca-alginate beads: a case study in ectomycorrhizal fungus Astraeus odoratus. 优化固定在钙铝酸盐珠子中的菌丝接种体的条件:一项关于外生菌根真菌 Astraeus odoratus 的案例研究。
IF 4 3区 生物学
World journal of microbiology & biotechnology Pub Date : 2024-06-11 DOI: 10.1007/s11274-024-03962-8
Yanisa Punsung, Pawara Pachit, Teeratas Kijpornyongpan, Chanita Paliyavuth, Karn Imwattana, Jittra Piapukiew
{"title":"Optimizing conditions of mycelial inoculum immobilized in Ca-alginate beads: a case study in ectomycorrhizal fungus Astraeus odoratus.","authors":"Yanisa Punsung, Pawara Pachit, Teeratas Kijpornyongpan, Chanita Paliyavuth, Karn Imwattana, Jittra Piapukiew","doi":"10.1007/s11274-024-03962-8","DOIUrl":"10.1007/s11274-024-03962-8","url":null,"abstract":"<p><p>Ectomycorrhizal inoculum has emerged as a critical tool for forest restoration, especially under challenging climate change conditions. The inoculation of selective ectomycorrhizal fungi can enhance seedling survival and subsequent growth in the field. This study optimized the liquid media for mycelial growth of Astraeus odoratus strain K1 and the sodium alginate solution composition for enhanced mycelial viability after entrapment. Using Modified Melin-Norkrans as the optimal media for mycelial cultivation and 2% sodium alginate supplemented with Czapek medium, 0.25% activated charcoal, 5% sucrose, and 5% sorbitol in the alginate solution yielded the highest viability of A. odoratus mycelia. Preservation in distilled water and 10% glycerol at 25 °C for 60 days proved to be the most effective storage condition for the alginate beads. Both fresh and preserved alginate beads were tested for colonizing on Hopea odorata Roxb. seedlings, showing successful colonization and ectomycorrhizal root formation, with over 49% colonization. This study fills a crucial gap in biotechnology and ectomycorrhizal inoculum, paving the way for more effective and sustainable forest restoration practices.</p>","PeriodicalId":23703,"journal":{"name":"World journal of microbiology & biotechnology","volume":null,"pages":null},"PeriodicalIF":4.0,"publicationDate":"2024-06-11","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141301745","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Enhancing biodegradation of vegetable oil-contaminated soil with soybean texturized waste, spent mushroom substrate, and stabilized poultry litter in microcosm systems. 在微宇宙系统中使用大豆膨化废料、废蘑菇基质和稳定的家禽粪便加强植物油污染土壤的生物降解。
IF 4 3区 生物学
World journal of microbiology & biotechnology Pub Date : 2024-06-10 DOI: 10.1007/s11274-024-04040-9
Debora Conde Molina, Vanina Di Gregorio
{"title":"Enhancing biodegradation of vegetable oil-contaminated soil with soybean texturized waste, spent mushroom substrate, and stabilized poultry litter in microcosm systems.","authors":"Debora Conde Molina, Vanina Di Gregorio","doi":"10.1007/s11274-024-04040-9","DOIUrl":"10.1007/s11274-024-04040-9","url":null,"abstract":"<p><p>Industrial activities contribute to environmental pollution, particularly through unregulated effluent discharges, causing adverse effects on ecosystems. Vegetable oils, as insoluble substances, exacerbate this pollution, forming impermeable films and affecting the oxygen transfer, leading to serious habitat disruption. Organic wastes, such as soybean texturized waste, spent mushroom substrate, and stabilized poultry litter, were assessed for their efficacy in enhancing the degradation of vegetable oil in contaminated soil. For this purpose, contaminated soil was amended with each of the wastes (10% w/w) using microcosm systems, which were monitored physico-chemically, microbiologically and toxicologically. Results indicate that the wastes promoted significant oil degradation, achieving 83.1, 90.7, and 86.2% removal for soybean texturized waste, spent mushroom substrate, and stabilized poultry litter, respectively, within a 90-day period. Additionally, they positively influenced soil microbial activity, as evidenced by increased levels of culturable microorganisms and hydrolytic microbial activity. While bioassays indicated no phytotoxicity in most cases, soybean texturized waste exhibited inhibitory effects on seed germination and root elongation of Lactuca sativa. This study significantly enhances our comprehension of remediation techniques for sites tainted with vegetable oils, highlighting the critical role of organic waste as eco-friendly agents in soil restoration. Emphasizing the practical implications of these findings is imperative to underscore the relevance and urgency of addressing vegetable oil contamination in soil. Moving forward, tailored strategies considering both contaminant characteristics and soil ecosystem traits are vital for ensuring effective and sustainable soil remediation.</p>","PeriodicalId":23703,"journal":{"name":"World journal of microbiology & biotechnology","volume":null,"pages":null},"PeriodicalIF":4.0,"publicationDate":"2024-06-10","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141296878","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Regulation of nitrogen utilization and mycotoxin biosynthesis by the GATA transcription factor AaAreA in Alternaria alternata. Alternaria alternata 中 GATA 转录因子 AaAreA 对氮利用和霉菌毒素生物合成的调控。
IF 4 3区 生物学
World journal of microbiology & biotechnology Pub Date : 2024-06-08 DOI: 10.1007/s11274-024-04045-4
Liuqing Wang, Cheng Wang, Liang Xu, Meng Wang
{"title":"Regulation of nitrogen utilization and mycotoxin biosynthesis by the GATA transcription factor AaAreA in Alternaria alternata.","authors":"Liuqing Wang, Cheng Wang, Liang Xu, Meng Wang","doi":"10.1007/s11274-024-04045-4","DOIUrl":"10.1007/s11274-024-04045-4","url":null,"abstract":"<p><p>Alternaria alternata is a prevalent postharvest pathogen that generates diverse mycotoxins, notably alternariol (AOH) and alternariol monomethyl ether (AME), which are recurrent severe contaminants. Nitrogen sources modulate fungal growth, development, and secondary metabolism, including mycotoxin production. The GATA transcription factor AreA regulates nitrogen source utilization. However, little is known about its involvement in the regulation of nitrogen utilization in A. alternata. To examine the regulatory mechanism of AaAreA on AOH and AME biosynthesis in A. alternata, we analyzed the impact of diverse nitrogen sources on the fungal growth, conidiation and mycotoxin production. The use of a secondary nitrogen source (NaNO<sub>3</sub>) enhanced mycelial elongation and sporulation more than the use of a primary source (NH<sub>4</sub>Cl). NaNO<sub>3</sub> favored greater mycotoxin accumulation than did NH<sub>4</sub>Cl. The regulatory roles of AaAreA were further clarified through gene knockout. The absence of AaAreA led to an overall reduction in growth in minimal media containing any nitrogen source except NH<sub>4</sub>Cl. AaAreA positively regulates mycotoxin biosynthesis when both NH<sub>4</sub>Cl and NaNO<sub>3</sub> are used as nitrogen sources. Subcellular localization analysis revealed abundant nuclear transport when NaNO<sub>3</sub> was the sole nitrogen source. The regulatory pathway of AaAreA was systematically revealed through comprehensive transcriptomic analyses. The deletion of AaAreA significantly impedes the transcription of mycotoxin biosynthetic genes, including aohR, pksI and omtI. The interaction between AaAreA and aohR, a pathway-specific transcription factor gene, demonstrated that AaAreA binds to the aohR promoter sequence (5'-GGCTATGGAAA-3'), activating its transcription. The expressed AohR regulates the expression of downstream synthase genes in the cluster, ultimately impacting mycotoxin production. This study provides valuable information to further understand how AreA regulates AOH and AME biosynthesis in A. alternata, thereby enabling the effective design of control measures for mycotoxin contamination.</p>","PeriodicalId":23703,"journal":{"name":"World journal of microbiology & biotechnology","volume":null,"pages":null},"PeriodicalIF":4.0,"publicationDate":"2024-06-08","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141293776","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Multidrug resistance profile in Lactobacillus delbrueckii: a food industry species with probiotic properties. 德尔布鲁贝克乳杆菌的多重耐药性特征:一种具有益生菌特性的食品工业菌种。
IF 4 3区 生物学
World journal of microbiology & biotechnology Pub Date : 2024-06-08 DOI: 10.1007/s11274-024-04046-3
Ludmila Silva Quaresma, Rhayane Cristina Viegas Santos, Gabriel Camargos Gomes, Monique Ferrary Américo, Gabriela Munis Campos, Juliana Guimarães Laguna, Fernanda Alvarenga Lima Barroso, Vasco Azevedo, Luís Cláudio Lima de Jesus
{"title":"Multidrug resistance profile in Lactobacillus delbrueckii: a food industry species with probiotic properties.","authors":"Ludmila Silva Quaresma, Rhayane Cristina Viegas Santos, Gabriel Camargos Gomes, Monique Ferrary Américo, Gabriela Munis Campos, Juliana Guimarães Laguna, Fernanda Alvarenga Lima Barroso, Vasco Azevedo, Luís Cláudio Lima de Jesus","doi":"10.1007/s11274-024-04046-3","DOIUrl":"10.1007/s11274-024-04046-3","url":null,"abstract":"<p><p>Lactobacillus delbrueckii, a widely used lactic acid bacterium in the food industry, has been studied for its probiotic properties and reservoir of antibiotic-resistant genes, raising safety concerns for probiotic formulations and fermented products. This review consolidates findings from 60 articles published between 2012 and 2023, focusing on the global antibiotic resistance profile and associated genetic factors in L. delbrueckii strains. Resistance to aminoglycosides, particularly streptomycin, kanamycin, and gentamicin, as well as resistance to glycopeptides (vancomycin), fluoroquinolones (ciprofloxacin), and tetracyclines was predominant. Notably, although resistance genes have been identified, they have not been linked to mobile genetic elements, reducing the risk of dissemination. However, a significant limitation is the insufficient exploration of responsible genes or mobile elements in 80% of studies, hindering safety assessments. Additionally, most articles originated from Asian and Middle Eastern countries, with strains often isolated from fermented dairy foods. Therefore, these findings underscore the necessity for comprehensive analyses of new strains of L. delbrueckii for potential industrial and biotherapeutic applications and in combating the rise of antibiotic-resistant pathogens.</p>","PeriodicalId":23703,"journal":{"name":"World journal of microbiology & biotechnology","volume":null,"pages":null},"PeriodicalIF":4.0,"publicationDate":"2024-06-08","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141293775","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Inter-species interaction of bradyrhizobia affects their colonization and plant growth promotion in Arachis hypogaea. 稻田根瘤菌的种间相互作用影响其在花生(Arachis hypogaea)中的定殖和对植物生长的促进作用。
IF 4 3区 生物学
World journal of microbiology & biotechnology Pub Date : 2024-06-07 DOI: 10.1007/s11274-024-04035-6
Dipanwita Patra, Kamal K Pal, Sukhendu Mandal
{"title":"Inter-species interaction of bradyrhizobia affects their colonization and plant growth promotion in Arachis hypogaea.","authors":"Dipanwita Patra, Kamal K Pal, Sukhendu Mandal","doi":"10.1007/s11274-024-04035-6","DOIUrl":"10.1007/s11274-024-04035-6","url":null,"abstract":"<p><p>Bradyrhizobia are the principal symbiotic partner of the leguminous plant and take active part in biological nitrogen-fixation. The present investigation explores the underlying competition among different strains during colonization in host roots. Six distinct GFP and RFP-tagged Bradyrhizobium strains were engineered to track them inside the peanut roots either independently or in combination. The Bradyrhizobium strains require different time-spans ranging from 4 to 21 days post-infection (dpi) for successful colonization which further varies in presence of another strain. While most of the individual strains enhanced the shoot and root dry weight, number of nodules, and nitrogen fixation capabilities of the host plants, no significant enhancement of plant growth and nodulation efficiency was observed when they were allowed to colonize in combinations. However, if among the combinations one strains is SEMIA 6144, the co-infection results in higher growth and nodulation efficiency of the hosts. From the competition experiments it has been found that Bradyrhizobium japonicum SEMIA 6144 was found to be the most dominant strain for effective nodulation in peanut. The extent of biofilm and exopolysaccharide (EPS) production by these isolates, individually or in combinations, were envisaged to correlate whether these parameters have any impact on the symbiotic association. But the extent of colonization, growth-promotion and nitrogen-fixation ability drastically lowered when a strain present together with other Bradyrhizobium strain. Therefore, it is imperative to understand the interaction between two co-inoculating Bradyrhizobium species for nodulation followed by plant growth promotion to develop suitable consortia for enhancing BNF in peanut and possibly for other legumes.</p>","PeriodicalId":23703,"journal":{"name":"World journal of microbiology & biotechnology","volume":null,"pages":null},"PeriodicalIF":4.0,"publicationDate":"2024-06-07","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141284796","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
AcrAB-TolC efflux pump overexpression and tet(A) gene mutation increase tigecycline resistance in Klebsiella pneumoniae. AcrAB-TolC 外排泵过表达和 tet(A) 基因突变增加了肺炎克雷伯氏菌对替加环素的耐药性。
IF 4 3区 生物学
World journal of microbiology & biotechnology Pub Date : 2024-06-06 DOI: 10.1007/s11274-024-04039-2
Zhaoxin Xia, Jing Zhou, Nana Gao, Ge Li, Runde Liu, Guoping Lu, Jilu Shen
{"title":"AcrAB-TolC efflux pump overexpression and tet(A) gene mutation increase tigecycline resistance in Klebsiella pneumoniae.","authors":"Zhaoxin Xia, Jing Zhou, Nana Gao, Ge Li, Runde Liu, Guoping Lu, Jilu Shen","doi":"10.1007/s11274-024-04039-2","DOIUrl":"10.1007/s11274-024-04039-2","url":null,"abstract":"<p><p>Tigecycline-non-susceptible Klebsiella pneumoniae (TNSKP) is increasing and has emerged as a global public health issue. However, the mechanism of tigecycline resistance remains unclear. The objective of this study was to investigate the potential role of efflux pump system in tigecycline resistance. 29 tigecycline-non-susceptible Klebsiella pneumoniae (TNSKP) strains were collected and their minimum inhibitory concentrations (MIC) were determined by the broth microdilution method. The ramR, acrR, rpsJ, tet(A), and tet(X) were amplified by polymerase chain reaction (PCR). The mRNA expression of different efflux pump genes and regulator genes were analyzed by real-time PCR. Additionally, KP14 was selected for genome sequencing. KP14 genes without acrB, oqxB, and TetA were modified using suicide plasmids and MIC of tigecycline of KP14 with target genes knocked out was investigated. It was found that MIC of tigecycline of 20 out of the 29 TNSKP strains decreased by over four folds once combined with phenyl-arginine-β-naphthylamide dihydrochloride (PaβN). Most strains exhibited upregulation of AcrAB and oqxAB efflux pumps. The strains with acrB, oqxB, and tetA genes knocked out were constructed, wherein the MIC of tigecycline of KP14∆acrB and KP14∆tetA was observed to be 2 µg/mL (decreased by 16 folds), the MIC of tigecycline of KP14ΔacrBΔTetA was 0.25 µg/mL (decreased by 128 folds), but the MIC of tigecycline of KP14∆oqxB remained unchanged at 32 µg/mL. The majority of TNSKP strains demonstrated increased expression of AcrAB-TolC and oqxAB, while certain strains showed mutations in other genes associated with tigecycline resistance. In KP14, both overexpression of AcrAB-TolC and tet(A) gene mutation contributed to the mechanism of tigecycline resistance.</p>","PeriodicalId":23703,"journal":{"name":"World journal of microbiology & biotechnology","volume":null,"pages":null},"PeriodicalIF":4.0,"publicationDate":"2024-06-06","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141263033","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
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