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Duck STING mediates antiviral autophagy directing the interferon signaling pathway to inhibit duck plague virus infection. 鸭STING介导抗病毒自噬,引导干扰素信号通路抑制鸭瘟病毒感染。
IF 3.7 1区 农林科学
Veterinary Research Pub Date : 2024-06-28 DOI: 10.1186/s13567-024-01338-2
Bin Tian, Yanming Tian, Xuetong Wang, Dongjie Cai, Liping Wu, Mingshu Wang, Renyong Jia, Shun Chen, Dekang Zhu, Mafeng Liu, Qiao Yang, Ying Wu, Xinxin Zhao, Shaqiu Zhang, Di Sun, Juan Huang, Xumin Ou, Zhen Wu, Anchun Cheng
{"title":"Duck STING mediates antiviral autophagy directing the interferon signaling pathway to inhibit duck plague virus infection.","authors":"Bin Tian, Yanming Tian, Xuetong Wang, Dongjie Cai, Liping Wu, Mingshu Wang, Renyong Jia, Shun Chen, Dekang Zhu, Mafeng Liu, Qiao Yang, Ying Wu, Xinxin Zhao, Shaqiu Zhang, Di Sun, Juan Huang, Xumin Ou, Zhen Wu, Anchun Cheng","doi":"10.1186/s13567-024-01338-2","DOIUrl":"10.1186/s13567-024-01338-2","url":null,"abstract":"<p><p>Migratory birds are important vectors for virus transmission, how migratory birds recognize viruses and viruses are sustained in birds is still enigmatic. As an animal model for waterfowl among migratory birds, studying and dissecting the antiviral immunity and viral evasion in duck cells may pave a path to deciphering these puzzles. Here, we studied the mechanism of antiviral autophagy mediated by duck STING in DEF cells. The results collaborated that duck STING could significantly enhance LC3B-II/I turnover, LC3B-EGFP puncta formation, and mCherry/EGFP ratio, indicating that duck STING could induce autophagy. The autophagy induced by duck STING is not affected by shRNA knockdown of ATG5 expression, deletion of the C-terminal tail of STING, or TBK1 inhibitor BX795 treatment, indicating that duck STING activated non-classical selective autophagy is independent of interaction with TBK1, TBK1 phosphorylation, and interferon (IFN) signaling. The STING R235A mutant and Sar1A/B kinase mutant abolished duck STING induced autophagy, suggesting binding with cGAMP and COPII complex mediated transport are the critical prerequisite. Duck STING interacted with LC3B through LIR motifs to induce autophagy, the LIR 4/7 motif mutants of duck STING abolished the interaction with LC3B, and neither activated autophagy nor IFN expression, indicating that duck STING associates with LC3B directed autophagy and dictated innate immunity activation. Finally, we found that duck STING mediated autophagy significantly inhibited duck plague virus (DPV) infection via ubiquitously degraded viral proteins. Our study may shed light on one scenario about the control and evasion of diseases transmitted by migratory birds.</p>","PeriodicalId":23658,"journal":{"name":"Veterinary Research","volume":"55 1","pages":"83"},"PeriodicalIF":3.7,"publicationDate":"2024-06-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11214240/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141471030","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Evaluation of the immunogenicity and protective efficacy of an inactivated vaccine candidate for sheep infected with ovine parainfluenza virus type 3. 评估绵羊感染绵羊副流感病毒 3 型灭活疫苗的免疫原性和保护效力。
IF 3.7 1区 农林科学
Veterinary Research Pub Date : 2024-06-27 DOI: 10.1186/s13567-024-01339-1
Yanhua Ma, Jialei Wang, Youzhi Wu, Xiaohui Zan, Yan Wang, Yanyan Zhou, Tao Wang, Caifeng Gong, Kai Meng, Rui Niu, Qiang Shang, Hao Wang, Jiali Wang, Ying He, Wei Wang
{"title":"Evaluation of the immunogenicity and protective efficacy of an inactivated vaccine candidate for sheep infected with ovine parainfluenza virus type 3.","authors":"Yanhua Ma, Jialei Wang, Youzhi Wu, Xiaohui Zan, Yan Wang, Yanyan Zhou, Tao Wang, Caifeng Gong, Kai Meng, Rui Niu, Qiang Shang, Hao Wang, Jiali Wang, Ying He, Wei Wang","doi":"10.1186/s13567-024-01339-1","DOIUrl":"https://doi.org/10.1186/s13567-024-01339-1","url":null,"abstract":"<p><p>Respiratory diseases constitute a major health problem for ruminants, resulting in considerable economic losses throughout the world. Parainfluenza type 3 virus (PIV3) is one of the most important respiratory pathogens of ruminants. The pathogenicity and phylogenetic analyses of PIV3 virus have been reported in sheep and goats. However, there are no recent studies of the vaccination of sheep or goats against PIV3. Here, we developed a purified inactivated ovine parainfluenza virus type 3 (OPIV3) vaccine candidate. In addition, we immunized sheep with the inactivated OPIV3 vaccine and evaluated the immune response and pathological outcomes associated with OPIV3 TX01 infection. The vaccinated sheep demonstrated no obvious symptoms of respiratory tract infection, and there were no gross lesions or pathological changes in the lungs. The average body weight gain significantly differed between the vaccinated group and the control group (P < 0.01). The serum neutralization antibody levels rapidly increased in sheep post-vaccination and post-challenge with OPIV3. Furthermore, viral shedding in nasal swabs and viral loads in the lungs were reduced. The results of this study suggest that vaccination with this candidate vaccine induces the production of neutralizing antibodies and provides significant protection against OPIV3 infection. These results may be helpful for further studies on prevention and control strategies for OPIV3 infections.</p>","PeriodicalId":23658,"journal":{"name":"Veterinary Research","volume":"55 1","pages":"82"},"PeriodicalIF":3.7,"publicationDate":"2024-06-27","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11212184/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141471031","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Mapping the scientific output of organoids for animal and human modeling infectious diseases: a bibliometric assessment. 绘制用于动物和人体模型传染病的器官组织科学成果图:文献计量学评估。
IF 3.7 1区 农林科学
Veterinary Research Pub Date : 2024-06-26 DOI: 10.1186/s13567-024-01333-7
Jin Yan, Jean Monlong, Céline Cougoule, Sonia Lacroix-Lamandé, Agnès Wiedemann
{"title":"Mapping the scientific output of organoids for animal and human modeling infectious diseases: a bibliometric assessment.","authors":"Jin Yan, Jean Monlong, Céline Cougoule, Sonia Lacroix-Lamandé, Agnès Wiedemann","doi":"10.1186/s13567-024-01333-7","DOIUrl":"10.1186/s13567-024-01333-7","url":null,"abstract":"<p><p>The escalation of antibiotic resistance, pandemics, and nosocomial infections underscores the importance of research in both animal and human infectious diseases. Recent advancements in three-dimensional tissue cultures, or \"organoids\", have revolutionized the development of in vitro models for infectious diseases. Our study conducts a bibliometric analysis on the use of organoids in modeling infectious diseases, offering an in-depth overview of this field's current landscape. We examined scientific contributions from 2009 onward that focused on organoids in host‒pathogen interactions using the Web of Science Core Collection and OpenAlex database. Our analysis included temporal trends, reference aging, author, and institutional productivity, collaborative networks, citation metrics, keyword cluster dynamics, and disruptiveness of organoid models. VOSviewer, CiteSpace, and Python facilitated this analytical assessment. The findings reveal significant growth and advancements in organoid-based infectious disease research. Analysis of keywords and impactful publications identified three distinct developmental phases in this area that were significantly influenced by outbreaks of Zika and SARS-CoV-2 viruses. The research also highlights the synergistic efforts between academia and publishers in tackling global pandemic challenges. Through mostly consolidating research efforts, organoids are proving to be a promising tool in infectious disease research for both human and animal infectious disease. Their integration into the field necessitates methodological refinements for better physiological emulation and the establishment of extensive organoid biobanks. These improvements are crucial for fully harnessing the potential of organoids in understanding infectious diseases and advancing the development of targeted treatments and vaccines.</p>","PeriodicalId":23658,"journal":{"name":"Veterinary Research","volume":"55 1","pages":"81"},"PeriodicalIF":3.7,"publicationDate":"2024-06-26","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11210181/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141459656","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Regulatory effects of Trichinella spiralis serpin-type serine protease inhibitor on endoplasmic reticulum stress and oxidative stress in host intestinal epithelial cells. 旋毛虫丝氨酸蛋白酶抑制剂对宿主肠上皮细胞内质网应激和氧化应激的调节作用
IF 3.7 1区 农林科学
Veterinary Research Pub Date : 2024-06-14 DOI: 10.1186/s13567-024-01334-6
Jingbo Zhen, Lihao Lin, Zhixin Li, Feng Sun, Yang Han, Qiankun Li, Yuqi Yang, Xueting Liu, Junchen Yu, Qi Zhang, Yixin Lu, Caixia Han
{"title":"Regulatory effects of Trichinella spiralis serpin-type serine protease inhibitor on endoplasmic reticulum stress and oxidative stress in host intestinal epithelial cells.","authors":"Jingbo Zhen, Lihao Lin, Zhixin Li, Feng Sun, Yang Han, Qiankun Li, Yuqi Yang, Xueting Liu, Junchen Yu, Qi Zhang, Yixin Lu, Caixia Han","doi":"10.1186/s13567-024-01334-6","DOIUrl":"10.1186/s13567-024-01334-6","url":null,"abstract":"<p><p>Endoplasmic reticulum stress (ERS) and oxidative stress (OS) are adaptive responses of the body to stressor stimulation. Although it has been verified that Trichinella spiralis (T. spiralis) can induce ERS and OS in the host, their association is still unclear. Therefore, this study explored whether T. spiralis-secreted serpin-type serine protease inhibitor (TsAdSPI) is involved in regulating the relationship between ERS and OS in the host intestine. In this study, mice jejunum and porcine small intestinal epithelial cells (IECs) were detected using qPCR, western blotting, immunohistochemistry (IHC), immunofluorescence (IF), and detection kits. The results showed that ERS- and OS-related indexes changed significantly after TsAdSPI stimulation, and Bip was located in IECs, indicating that TsAdSPI could induce ERS and OS in IECs. After the use of an ERS inhibitor, OS-related indexes were inhibited, suggesting that TsAdSPI-induced OS depends on ERS. When the three ERS signalling pathways, ATF6, IRE1, and PERK, were sequentially suppressed, OS was only regulated by the PERK pathway, and the PERK-eif2α-CHOP-ERO1α axis played a key role. Similarly, the expression of ERS-related indexes and the level of intracellular Ca<sup>2+</sup> were inhibited after adding the OS inhibitor, and the expression of ERS-related indexes decreased significantly after inhibiting calcium transfer. This finding indicated that TsAdSPI-induced OS could affect ERS by promoting Ca<sup>2+</sup> efflux from the endoplasmic reticulum. The detection of the ERS and OS sequences revealed that OS occurred before ERS. Finally, changes in apoptosis-related indexes were detected, and the results indicated that TsAdSPI-induced ERS and OS could regulate IEC apoptosis. In conclusion, TsAdSPI induced OS after entering IECs, OS promoted ERS by enhancing Ca<sup>2+</sup> efflux, and ERS subsequently strengthened OS by activating the PERK-eif2α-CHOP-ERO1α axis. ERS and OS induced by TsAdSPI synergistically promoted IEC apoptosis. This study provides a foundation for exploring the invasion mechanism of T. spiralis and the pathogenesis of host intestinal dysfunction after invasion.</p>","PeriodicalId":23658,"journal":{"name":"Veterinary Research","volume":"55 1","pages":"78"},"PeriodicalIF":3.7,"publicationDate":"2024-06-14","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11179199/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141321736","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Correction: STING-dependent trained immunity contributes to host defense against Clostridium perfringens infection via mTOR signaling. 更正:STING 依赖性训练免疫通过 mTOR 信号转导促进宿主对产气荚膜梭菌感染的防御。
IF 4.4 1区 农林科学
Veterinary Research Pub Date : 2024-06-13 DOI: 10.1186/s13567-024-01322-w
Zhen-Zhen Liu, Cheng-Kai Zhou, Xiao-Qi Lin, Yu Gao, Xue-Yue Luo, Jia-Bao Zhang, Qi Yin, Liang Zhang, Jian-Gang Zhang, Xin An, Wei Chen, Yong-Jun Yang
{"title":"Correction: STING-dependent trained immunity contributes to host defense against Clostridium perfringens infection via mTOR signaling.","authors":"Zhen-Zhen Liu, Cheng-Kai Zhou, Xiao-Qi Lin, Yu Gao, Xue-Yue Luo, Jia-Bao Zhang, Qi Yin, Liang Zhang, Jian-Gang Zhang, Xin An, Wei Chen, Yong-Jun Yang","doi":"10.1186/s13567-024-01322-w","DOIUrl":"10.1186/s13567-024-01322-w","url":null,"abstract":"","PeriodicalId":23658,"journal":{"name":"Veterinary Research","volume":"55 1","pages":"77"},"PeriodicalIF":4.4,"publicationDate":"2024-06-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11177374/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141318427","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Host specificity and virulence of Flavobacterium psychrophilum: a comparative study in ayu (Plecoglossus altivelis) and rainbow trout (Oncorhynchus mykiss) hosts. 精神黄杆菌的宿主特异性和致病力:对鲶鱼(Plecoglossus altivelis)和虹鳟鱼(Oncorhynchus mykiss)宿主的比较研究。
IF 4.4 1区 农林科学
Veterinary Research Pub Date : 2024-06-12 DOI: 10.1186/s13567-024-01326-6
Erina Fujiwara-Nagata, Tatiana Rochat, Bo-Hyung Lee, Delphine Lallias, Dimitri Rigaudeau, Eric Duchaud
{"title":"Host specificity and virulence of Flavobacterium psychrophilum: a comparative study in ayu (Plecoglossus altivelis) and rainbow trout (Oncorhynchus mykiss) hosts.","authors":"Erina Fujiwara-Nagata, Tatiana Rochat, Bo-Hyung Lee, Delphine Lallias, Dimitri Rigaudeau, Eric Duchaud","doi":"10.1186/s13567-024-01326-6","DOIUrl":"10.1186/s13567-024-01326-6","url":null,"abstract":"<p><p>Flavobacterium psychrophilum, the causative agent of bacterial cold-water disease, is a devastating, worldwide distributed, fish pathogen causing significant economic loss in inland fish farms. Previous epidemiological studies showed that prevalent clonal complexes (CC) differ in fish species affected with disease such as rainbow trout, coho salmon and ayu, indicating significant associations between particular F. psychrophilum genotypes and host species. Yet, whether the population structure is driven by the trade of fish and eggs or by host-specific pathogenicity is uncertain. Notably, all F. psychrophilum isolates retrieved from ayu belong to Type-3 O antigen (O-Ag) whereas only very few strains retrieved from other fish species possess this O-Ag, suggesting a role in outbreaks affecting ayu. Thus, we investigated the links between genotype and pathogenicity by conducting comparative bath infection challenges in two fish hosts, ayu and rainbow trout, for a collection of isolates representing different MLST genotypes and O-Ag. Highly virulent strains in one host species exhibited low to no virulence in the other. F. psychrophilum strains associated with ayu and possessing Type-3 O-Ag demonstrated significant variability in pathogenicity in ayu, ranging from avirulent to highly virulent. Strikingly, F. psychrophilum strains retrieved from rainbow trout and possessing the Type-3 O-Ag were virulent for rainbow trout but not for ayu, indicating that Type-3 O-Ag alone is not sufficient for pathogenicity in ayu, nor does it prevent pathogenicity in rainbow trout. This study revealed that the association between a particular CC and host species partly depends on the pathogen's adaptation to specific host species.</p>","PeriodicalId":23658,"journal":{"name":"Veterinary Research","volume":"55 1","pages":"75"},"PeriodicalIF":4.4,"publicationDate":"2024-06-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11167770/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141311869","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Soluble CD14 produced by bovine mammary epithelial cells modulates their response to full length LPS. 牛乳腺上皮细胞产生的可溶性 CD14 可调节其对全长 LPS 的反应。
IF 3.7 1区 农林科学
Veterinary Research Pub Date : 2024-06-12 DOI: 10.1186/s13567-024-01329-3
Mégane Védrine, Florence B Gilbert, Sarah Maman, Christophe Klopp, Christophe Gitton, Pascal Rainard, Pierre Germon
{"title":"Soluble CD14 produced by bovine mammary epithelial cells modulates their response to full length LPS.","authors":"Mégane Védrine, Florence B Gilbert, Sarah Maman, Christophe Klopp, Christophe Gitton, Pascal Rainard, Pierre Germon","doi":"10.1186/s13567-024-01329-3","DOIUrl":"10.1186/s13567-024-01329-3","url":null,"abstract":"<p><p>Bovine mastitis remains a major disease in cattle world-wide. In the mammary gland, mammary epithelial cells (MEC) are sentinels equipped with receptors allowing them to detect and respond to the invasion by bacterial pathogens, in particular Escherichia coli. Lipopolysaccharide (LPS) is the major E. coli motif recognized by MEC through its interaction with the TLR4 receptor and the CD14 co-receptor. Previous studies have highlighted the role of soluble CD14 (sCD14) in the efficient recognition of LPS molecules possessing a full-length O-antigen (LPSS). We demonstrate here that MEC are able to secrete CD14 and are likely to contribute to the presence of sCD14 in milk. We then investigated how sCD14 modulates and is required for the response of MEC to LPSS. This study highlights the key role of sCD14 for the full activation of the Myd88-independent pathway by LPSS. We also identified several lncRNA that are activated in MEC in response to LPS, including one lncRNA showing homologies with the mir-99a-let-7c gene (MIR99AHG). Altogether, our results show that a full response to LPS by mammary epithelial cells requires sCD14 and provide detailed information on how milk sCD14 can contribute to an efficient recognition of LPS from coliform pathogens.</p>","PeriodicalId":23658,"journal":{"name":"Veterinary Research","volume":"55 1","pages":"76"},"PeriodicalIF":3.7,"publicationDate":"2024-06-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11170775/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141311870","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Evaluation of bovine coronavirus in Korean native calves challenged through different inoculation routes. 通过不同的接种途径对韩国本地犊牛的牛冠状病毒进行评估。
IF 4.4 1区 农林科学
Veterinary Research Pub Date : 2024-06-11 DOI: 10.1186/s13567-024-01331-9
Hyung-Chul Cho, Youngjun Kim, Yong-Il Cho, Jinho Park, Kyoung-Seong Choi
{"title":"Evaluation of bovine coronavirus in Korean native calves challenged through different inoculation routes.","authors":"Hyung-Chul Cho, Youngjun Kim, Yong-Il Cho, Jinho Park, Kyoung-Seong Choi","doi":"10.1186/s13567-024-01331-9","DOIUrl":"10.1186/s13567-024-01331-9","url":null,"abstract":"<p><p>Bovine coronavirus (BCoV) is a pneumoenteric virus that can infect the digestive and respiratory tracts of cattle, resulting in economic losses. Despite its significance, information regarding BCoV pathogenesis is limited. Hence, we investigated clinical signs, patterns of viral shedding, changes in antibody abundance, and cytokine/chemokine production in calves inoculated with BCoV via intranasal and oral. Six clinically healthy Korean native calves (< 30 days old), initially negative for BCoV, were divided into intranasal and oral groups and monitored for 15 days post-infection (dpi). BCoV-infected calves exhibited clinical signs such as nasal discharge and diarrhea, starting at 3 dpi and recovering by 12 dpi, with nasal discharge being the most common symptoms. Viral RNA was detected in nasal and fecal samples from all infected calves. Nasal shedding occurred before fecal shedding regardless of the inoculation route; however, fecal shedding persisted longer. Although the number of partitions was very few, viral RNA was identified in the blood of two calves in the oral group at 7 dpi and 9 dpi using digital RT-PCR analysis. The effectiveness of maternal antibodies in preventing viral replication and shedding appeared limited. Our results showed interleukin (IL)-8 as the most common and highly induced chemokine. During BCoV infection, the levels of IL-8, monocyte chemoattractant protein-1, and macrophage inflammatory protein-1β were significantly affected, suggesting that these emerge as potential and reliable biomarkers for predicting BCoV infection. This study underscores the importance of BCoV as a major pathogen causing diarrhea and respiratory disease.</p>","PeriodicalId":23658,"journal":{"name":"Veterinary Research","volume":"55 1","pages":"74"},"PeriodicalIF":4.4,"publicationDate":"2024-06-11","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11165853/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141306965","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
In vitro phenotypic characterisation of two genotype I African swine fever viruses with genomic deletion isolated from Sardinian wild boars. 从撒丁岛野猪体内分离出的两种基因组缺失的 I 型非洲猪瘟病毒的体外表型特征。
IF 4.4 1区 农林科学
Veterinary Research Pub Date : 2024-06-07 DOI: 10.1186/s13567-024-01332-8
Giulia Franzoni, Mariangela S Fiori, Lorena Mura, Tania Carta, Antonello Di Nardo, Matteo Floris, Luca Ferretti, Susanna Zinellu, Pier Paolo Angioi, Anna Maria Sechi, Francesca Carusillo, Diego Brundu, Manlio Fadda, Riccardo Bazzardi, Monica Giammarioli, Stefano Cappai, Silvia Dei Giudici, Annalisa Oggiano
{"title":"In vitro phenotypic characterisation of two genotype I African swine fever viruses with genomic deletion isolated from Sardinian wild boars.","authors":"Giulia Franzoni, Mariangela S Fiori, Lorena Mura, Tania Carta, Antonello Di Nardo, Matteo Floris, Luca Ferretti, Susanna Zinellu, Pier Paolo Angioi, Anna Maria Sechi, Francesca Carusillo, Diego Brundu, Manlio Fadda, Riccardo Bazzardi, Monica Giammarioli, Stefano Cappai, Silvia Dei Giudici, Annalisa Oggiano","doi":"10.1186/s13567-024-01332-8","DOIUrl":"10.1186/s13567-024-01332-8","url":null,"abstract":"<p><p>African swine fever virus (ASFV) causes a devastating disease affecting domestic and wild pigs. ASF was first introduced in Sardinia in 1978 and until 2019 only genotype I isolates were identified. A remarkable genetic stability of Sardinian ASFV isolates was described, nevertheless in 2019 two wild boar isolates with a sustained genomic deletion (4342 base pairs) were identified (7303WB/19, 7212WB/19). In this study, we therefore performed in vitro experiments with monocyte-derived macrophages (moMФ) to unravel the phenotypic characteristics of these deleted viruses. Both 7303WB/19 and 7212WB/19 presented a lower growth kinetic in moMФ compared to virulent Sardinian 26544/OG10, using either a high (1) or a low (0.01) multiplicity of infection (MOI). In addition, flow cytometric analysis showed that both 7303WB/19 and 7212WB/19 presented lower intracellular levels of both early and late ASFV proteins. We subsequently investigated whether deleted virus variants were previously circulating in wild boars in Sardinia. In the four years preceding the last genotype I isolation (February 2015-January 2019), other eight wild boar isolates were collected, all belonging to p72 genotype I, B602L subgroup X, but none of them presented a sustained genomic deletion. Overall, we observed the deleted virus isolates in Sardinia only in 2019, at the end of a strong eradication campaign, and our data suggest that it might possess an attenuated phenotype in vivo. A better understanding of ASFV evolution in endemic territories might contribute to development of effective control measures against ASF.</p>","PeriodicalId":23658,"journal":{"name":"Veterinary Research","volume":"55 1","pages":"73"},"PeriodicalIF":4.4,"publicationDate":"2024-06-07","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11157848/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141288623","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Machine learning approach as an early warning system to prevent foodborne Salmonella outbreaks in northwestern Italy 将机器学习方法作为预防意大利西北部爆发食源性沙门氏菌疫情的预警系统
IF 4.4 1区 农林科学
Veterinary Research Pub Date : 2024-06-05 DOI: 10.1186/s13567-024-01323-9
Aitor Garcia-Vozmediano, Cristiana Maurella, Leonardo A. Ceballos, Elisabetta Crescio, Rosa Meo, Walter Martelli, Monica Pitti, Daniela Lombardi, Daniela Meloni, Chiara Pasqualini, Giuseppe Ru
{"title":"Machine learning approach as an early warning system to prevent foodborne Salmonella outbreaks in northwestern Italy","authors":"Aitor Garcia-Vozmediano, Cristiana Maurella, Leonardo A. Ceballos, Elisabetta Crescio, Rosa Meo, Walter Martelli, Monica Pitti, Daniela Lombardi, Daniela Meloni, Chiara Pasqualini, Giuseppe Ru","doi":"10.1186/s13567-024-01323-9","DOIUrl":"https://doi.org/10.1186/s13567-024-01323-9","url":null,"abstract":"Salmonellosis, one of the most common foodborne infections in Europe, is monitored by food safety surveillance programmes, resulting in the generation of extensive databases. By leveraging tree-based machine learning (ML) algorithms, we exploited data from food safety audits to predict spatiotemporal patterns of salmonellosis in northwestern Italy. Data on human cases confirmed in 2015–2018 (n = 1969) and food surveillance data collected in 2014–2018 were used to develop ML algorithms. We integrated the monthly municipal human incidence with 27 potential predictors, including the observed prevalence of Salmonella in food. We applied the tree regression, random forest and gradient boosting algorithms considering different scenarios and evaluated their predictivity in terms of the mean absolute percentage error (MAPE) and R2. Using a similar dataset from the year 2019, spatiotemporal predictions and their relative sensitivities and specificities were obtained. Random forest and gradient boosting (R2 = 0.55, MAPE = 7.5%) outperformed the tree regression algorithm (R2 = 0.42, MAPE = 8.8%). Salmonella prevalence in food; spatial features; and monitoring efforts in ready-to-eat milk, fruits and vegetables, and pig meat products contributed the most to the models’ predictivity, reducing the variance by 90.5%. Conversely, the number of positive samples obtained for specific food matrices minimally influenced the predictions (2.9%). Spatiotemporal predictions for 2019 showed sensitivity and specificity levels of 46.5% (due to the lack of some infection hotspots) and 78.5%, respectively. This study demonstrates the added value of integrating data from human and veterinary health services to develop predictive models of human salmonellosis occurrence, providing early warnings useful for mitigating foodborne disease impacts on public health.","PeriodicalId":23658,"journal":{"name":"Veterinary Research","volume":"69 1","pages":""},"PeriodicalIF":4.4,"publicationDate":"2024-06-05","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141255355","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
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