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Characterization of fungal communities in Puerto Rican caves using internal transcribed spacer sequencing. 利用内部转录间隔序列分析波多黎各洞穴真菌群落特征。
IF 0.7
Microbiology Resource Announcements Pub Date : 2025-05-22 DOI: 10.1128/mra.00022-25
Rene Nieves-Morales, Jessica Alejandra Paez-Diaz, Edwin Omar Rivera-Lopez, Natalia Pérez-Santos, Sebastián J Borrero-Villabol, Josué Rodríguez-Ramos, Angel M Nieves-Rivera, Carlos Rios-Velazquez
{"title":"Characterization of fungal communities in Puerto Rican caves using internal transcribed spacer sequencing.","authors":"Rene Nieves-Morales, Jessica Alejandra Paez-Diaz, Edwin Omar Rivera-Lopez, Natalia Pérez-Santos, Sebastián J Borrero-Villabol, Josué Rodríguez-Ramos, Angel M Nieves-Rivera, Carlos Rios-Velazquez","doi":"10.1128/mra.00022-25","DOIUrl":"https://doi.org/10.1128/mra.00022-25","url":null,"abstract":"<p><p>Cave ecosystems harbor unique and diverse microbial ecology, with fungal communities playing important roles. This study utilizes internal transcribed spacer across seven caves in the northern limestone karst belt area of Puerto Rico to investigate fungal composition. This enhances scientific understanding of subterranean microbial dynamics and supports conservation efforts.</p>","PeriodicalId":18654,"journal":{"name":"Microbiology Resource Announcements","volume":" ","pages":"e0002225"},"PeriodicalIF":0.7,"publicationDate":"2025-05-22","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144120120","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Transcriptome sequencing data sets of Escherichia coli K-12 MG1655 treated with novobiocin, tetracycline, and rifampicin. 新生物素、四环素和利福平处理的大肠杆菌K-12 MG1655转录组测序数据集。
IF 0.7
Microbiology Resource Announcements Pub Date : 2025-05-22 DOI: 10.1128/mra.01169-24
Alexander Balkin, Andrey Plotnikov, Tatiana Konnova, Elena Shagimardanova, Hamza Hamo, Yuri Gogolev, Natalia Gogoleva
{"title":"Transcriptome sequencing data sets of <i>Escherichia coli</i> K-12 MG1655 treated with novobiocin, tetracycline, and rifampicin.","authors":"Alexander Balkin, Andrey Plotnikov, Tatiana Konnova, Elena Shagimardanova, Hamza Hamo, Yuri Gogolev, Natalia Gogoleva","doi":"10.1128/mra.01169-24","DOIUrl":"https://doi.org/10.1128/mra.01169-24","url":null,"abstract":"<p><p>This report presents transcriptome datasets for <i>Escherichia coli</i> MG1655 treated with novobiocin, rifampicin, and tetracycline. Clusters of genes that respond to inhibition of RNA synthesis, protein synthesis, and DNA gyrase activity have been identified. The data may help to understand the mechanisms of general and specific resistance in <i>E. coli</i>.</p>","PeriodicalId":18654,"journal":{"name":"Microbiology Resource Announcements","volume":" ","pages":"e0116924"},"PeriodicalIF":0.7,"publicationDate":"2025-05-22","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144120139","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Genome sequences of Acinetobacter phage At2 and its host Acinetobacter tandoii W4-4-4. 不动杆菌噬菌体At2及其宿主坦杜不动杆菌W4-4-4的基因组序列。
IF 0.7
Microbiology Resource Announcements Pub Date : 2025-05-22 DOI: 10.1128/mra.00009-25
Soon Keong Wee, Biaoguo Yan, Su'Aidah Binte Mustaffa, Eric Peng Huat Yap
{"title":"Genome sequences of <i>Acinetobacter</i> phage At2 and its host <i>Acinetobacter tandoii</i> W4-4-4.","authors":"Soon Keong Wee, Biaoguo Yan, Su'Aidah Binte Mustaffa, Eric Peng Huat Yap","doi":"10.1128/mra.00009-25","DOIUrl":"https://doi.org/10.1128/mra.00009-25","url":null,"abstract":"<p><p>We present the genome sequences of <i>Acinetobacter</i> phage At2 and its host <i>Acinetobacter tandoii</i> strain W4-4-4, both isolated from a tropical mangrove swamp in Singapore. This report highlights the genetic features of both organisms, including antimicrobial resistance genes.</p>","PeriodicalId":18654,"journal":{"name":"Microbiology Resource Announcements","volume":" ","pages":"e0000925"},"PeriodicalIF":0.7,"publicationDate":"2025-05-22","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144120135","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Eight genome sequences of bacterial environmental isolates from Marr Pond, Antarctica. 南极Marr Pond环境分离细菌的8个基因组序列。
IF 0.7
Microbiology Resource Announcements Pub Date : 2025-05-22 DOI: 10.1128/mra.00135-25
Heidi J Smith, Markus Dieser, Christine M Foreman
{"title":"Eight genome sequences of bacterial environmental isolates from Marr Pond, Antarctica.","authors":"Heidi J Smith, Markus Dieser, Christine M Foreman","doi":"10.1128/mra.00135-25","DOIUrl":"https://doi.org/10.1128/mra.00135-25","url":null,"abstract":"<p><p>Inland meltwater ponds are common throughout the dry valley region of Antarctica, with seasonal meltwater inputs driving their biogeochemistry. Here, we report the genomic sequences of eight environmental bacterial isolates covering three major phyla from Marr Pond, Taylor Valley, Antarctica.</p>","PeriodicalId":18654,"journal":{"name":"Microbiology Resource Announcements","volume":" ","pages":"e0013525"},"PeriodicalIF":0.7,"publicationDate":"2025-05-22","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144120132","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
RefAHL: a curated quorum sensing reference linking diverse LuxI-type signal synthases with their acyl-homoserine lactone products. RefAHL：一个精心策划的群体感应参考，将各种luxi型信号合成酶与其酰基-高丝氨酸内酯产物联系起来。
IF 0.7
Microbiology Resource Announcements Pub Date : 2025-05-22 DOI: 10.1128/mra.00407-25
Amy L Schaefer, Ethan G Murdock, Dale A Pelletier, Caroline S Harwood, E Peter Greenberg, Aaron W Puri
{"title":"RefAHL: a curated quorum sensing reference linking diverse LuxI-type signal synthases with their acyl-homoserine lactone products.","authors":"Amy L Schaefer, Ethan G Murdock, Dale A Pelletier, Caroline S Harwood, E Peter Greenberg, Aaron W Puri","doi":"10.1128/mra.00407-25","DOIUrl":"https://doi.org/10.1128/mra.00407-25","url":null,"abstract":"<p><p>Some bacteria use acyl-homoserine lactone (AHL) signals in quorum sensing, a type of cell-cell communication. Here, we present \"RefAHL,\" an updated, curated collection of LuxI-type AHL synthases with their AHL products and associated metadata. RefAHL is publicly available as a community resource to help catalog LuxI-type diversity encoded in (meta) genomic data.</p>","PeriodicalId":18654,"journal":{"name":"Microbiology Resource Announcements","volume":" ","pages":"e0040725"},"PeriodicalIF":0.7,"publicationDate":"2025-05-22","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144120136","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Shotgun metagenomic sequencing for detection of foodborne pathogens in retail chicken. 散弹枪宏基因组测序检测零售鸡肉食源性致病菌。
IF 0.7
Microbiology Resource Announcements Pub Date : 2025-05-22 DOI: 10.1128/mra.00033-25
Anuradha J Punchihewage-Don, Nur A Hasan, Salina Parveen
{"title":"Shotgun metagenomic sequencing for detection of foodborne pathogens in retail chicken.","authors":"Anuradha J Punchihewage-Don, Nur A Hasan, Salina Parveen","doi":"10.1128/mra.00033-25","DOIUrl":"https://doi.org/10.1128/mra.00033-25","url":null,"abstract":"<p><p>We applied shotgun metagenomic sequencing to microbiomes from retail chicken processed using whole carcass enrichment and rinse methodologies to evaluate their effectiveness in detecting foodborne pathogens. The dataset has been made publicly available to facilitate future analysis of microbial diversity and pathogen presence across different sample processing methods.</p>","PeriodicalId":18654,"journal":{"name":"Microbiology Resource Announcements","volume":" ","pages":"e0003325"},"PeriodicalIF":0.7,"publicationDate":"2025-05-22","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144120138","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Complete African swine fever virus genome isolated from the 2023 outbreak in Cameroon. 从2023年喀麦隆爆发的非洲猪瘟病毒中分离出完整的基因组。
IF 0.7
Microbiology Resource Announcements Pub Date : 2025-05-22 DOI: 10.1128/mra.00651-24
Bonto Faburay, Yaya A Fondzenyuy, Lucy M Ndip, Jerome K Acha, Thomas N Masalla, Nene Keneh, Seraphine N Esemu, Roland N Ndip, Edward Spinard, Manuel V Borca, Lizhe Xu, Amy Berninger, Vivian O'Donnell, Douglas P Gladue
{"title":"Complete African swine fever virus genome isolated from the 2023 outbreak in Cameroon.","authors":"Bonto Faburay, Yaya A Fondzenyuy, Lucy M Ndip, Jerome K Acha, Thomas N Masalla, Nene Keneh, Seraphine N Esemu, Roland N Ndip, Edward Spinard, Manuel V Borca, Lizhe Xu, Amy Berninger, Vivian O'Donnell, Douglas P Gladue","doi":"10.1128/mra.00651-24","DOIUrl":"https://doi.org/10.1128/mra.00651-24","url":null,"abstract":"<p><p>African swine fever virus has been endemic in Cameroon since the early 1980s. Here, we report on the genotype I Cameroon/2023/SBP30 genome collected from a domestic pig during the 2023 outbreak.</p>","PeriodicalId":18654,"journal":{"name":"Microbiology Resource Announcements","volume":" ","pages":"e0065124"},"PeriodicalIF":0.7,"publicationDate":"2025-05-22","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144120122","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Complete genome sequence of bacteriophage LMC infecting Listeria monocytogenes from fowl droppings. 禽粪中单核增生李斯特菌噬菌体LMC的全基因组序列。
IF 0.7
Microbiology Resource Announcements Pub Date : 2025-05-22 DOI: 10.1128/mra.00333-25
Jiyoon Chung, Yoonjee Chang
{"title":"Complete genome sequence of bacteriophage LMC infecting <i>Listeria monocytogenes</i> from fowl droppings.","authors":"Jiyoon Chung, Yoonjee Chang","doi":"10.1128/mra.00333-25","DOIUrl":"https://doi.org/10.1128/mra.00333-25","url":null,"abstract":"<p><p><i>Listeria monocytogenes</i>-targeting phage (LMC) was isolated from fowl droppings, and its complete genome was analyzed. LMC consists of 42,151 bp with a GC content of 36.58% and contains 59 open reading frames. It has an icosahedral capsid and a long tail. It shows a high antibacterial ability against <i>L. monocytogenes</i> ATCC 19115.</p>","PeriodicalId":18654,"journal":{"name":"Microbiology Resource Announcements","volume":" ","pages":"e0033325"},"PeriodicalIF":0.7,"publicationDate":"2025-05-22","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144120125","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Draft genome sequence of Agarivorans albus strain S3 capable of utilizing nori as a nutrient source. 绘制能够利用海苔作为营养来源的黑底轮菌S3的基因组序列。
IF 0.7
Microbiology Resource Announcements Pub Date : 2025-05-22 DOI: 10.1128/mra.00292-25
Kiyohiko Seki, Yoshio Kawamura, Yukio Nagano
{"title":"Draft genome sequence of <i>Agarivorans albus</i> strain S3 capable of utilizing nori as a nutrient source.","authors":"Kiyohiko Seki, Yoshio Kawamura, Yukio Nagano","doi":"10.1128/mra.00292-25","DOIUrl":"https://doi.org/10.1128/mra.00292-25","url":null,"abstract":"<p><p>We sequenced the draft genome of <i>Agarivorans albus</i> strain S3, a bacterium capable of utilizing nori (<i>Pyropia yezoensis</i>), a polysaccharide-rich seaweed, as a nutrient source. The genome revealed approximately 100 genes involved in the degradation of starch, β-glucans including cellulose, galactans including agar/porphyran, mannans, xylan, and other polysaccharides.</p>","PeriodicalId":18654,"journal":{"name":"Microbiology Resource Announcements","volume":" ","pages":"e0029225"},"PeriodicalIF":0.7,"publicationDate":"2025-05-22","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144120128","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Draft genome sequence of Vreelandella neptunia strain 04GJ23 isolated from the underwater Hawaii seamounts. 绘制从夏威夷海底山中分离出的neptunivreelandella菌株04GJ23的基因组序列。
IF 0.7
Microbiology Resource Announcements Pub Date : 2025-05-22 DOI: 10.1128/mra.00882-24
Brynne Darden, Gabriel Johnson, Grace Busch, Indu Sharma
{"title":"Draft genome sequence of <i>Vreelandella neptunia</i> strain 04GJ23 isolated from the underwater Hawaii seamounts.","authors":"Brynne Darden, Gabriel Johnson, Grace Busch, Indu Sharma","doi":"10.1128/mra.00882-24","DOIUrl":"https://doi.org/10.1128/mra.00882-24","url":null,"abstract":"<p><p>We report a draft genome sequence for <i>Vreelandella neptunia</i> strain 04GJ23 isolated from the underwater Hawaii seamounts. The whole-genome sequence will help understand the ecology and evolution of various ecotypes that are physiologically distinct from the surrounding environments.</p>","PeriodicalId":18654,"journal":{"name":"Microbiology Resource Announcements","volume":" ","pages":"e0088224"},"PeriodicalIF":0.7,"publicationDate":"2025-05-22","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144120130","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
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