Tiana A Walder, Elizabeth A Odegard, Heidi L Meeds, Steven B Kleiboeker, Assem Ziady, Anthony Sabulski, Sonata Jodele, Alix E Seif, Stella M Davies, Benjamin L Laskin, Jason T Blackard
{"title":"Rare BK polyomavirus subtype III detected in hematopoietic cell transplant recipient.","authors":"Tiana A Walder, Elizabeth A Odegard, Heidi L Meeds, Steven B Kleiboeker, Assem Ziady, Anthony Sabulski, Sonata Jodele, Alix E Seif, Stella M Davies, Benjamin L Laskin, Jason T Blackard","doi":"10.1128/mra.00676-24","DOIUrl":"10.1128/mra.00676-24","url":null,"abstract":"<p><p>BK polyomavirus (BKPyV) is associated with disease in transplant patients. BKPyV genomic diversity is thought to contribute to functional differences in virulence factors. Here, we present the near full-length BKPyV genome sequence from a patient who underwent hematopoietic cell transplant and was infected with subtype III, a rare subtype.</p>","PeriodicalId":18654,"journal":{"name":"Microbiology Resource Announcements","volume":null,"pages":null},"PeriodicalIF":0.7,"publicationDate":"2024-11-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142350044","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Guan Lin, Xianhai Yang, Dong Xiang, Lei Yang, Yong Liu, Huilin Zhang, Shiwang Liu
{"title":"The complete genome sequence of a <i>Paenibacillus tundrae</i> strain MLY93 isolated from spot disease-infected tobacco leaves in China.","authors":"Guan Lin, Xianhai Yang, Dong Xiang, Lei Yang, Yong Liu, Huilin Zhang, Shiwang Liu","doi":"10.1128/mra.00221-24","DOIUrl":"10.1128/mra.00221-24","url":null,"abstract":"<p><p>This study presents the complete gene sequence of a <i>Paenibacillus tundrae</i> strain isolated from tobacco spot disease leaves in Xingyi, Guizhou Province, China. The genetic understanding of <i>P. tundrae</i> is advanced by this research.</p>","PeriodicalId":18654,"journal":{"name":"Microbiology Resource Announcements","volume":null,"pages":null},"PeriodicalIF":0.7,"publicationDate":"2024-11-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142350045","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Camilla L Nesbø, Minqing Ivy Yang, Anupama Achal Sharan, Torsten Meyer, Elizabeth A Edwards
{"title":"Metagenomes and metagenome assembled genomes from anaerobic digesters at three Canadian pulp and paper mills.","authors":"Camilla L Nesbø, Minqing Ivy Yang, Anupama Achal Sharan, Torsten Meyer, Elizabeth A Edwards","doi":"10.1128/mra.00561-24","DOIUrl":"10.1128/mra.00561-24","url":null,"abstract":"<p><p>We present a dataset of six metagenomes and 323 metagenome assembled genomes (MAGs) describing the microbial community of anaerobic digesters at three Canadian pulp and paper mills. Our objective was to assess the coding potential of the microbial community and obtain draft genomes of key organisms in the digesters.</p>","PeriodicalId":18654,"journal":{"name":"Microbiology Resource Announcements","volume":null,"pages":null},"PeriodicalIF":0.7,"publicationDate":"2024-11-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142381268","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Complete genome sequence of <i>Serratia plymuthica</i> SWSY-3.47.","authors":"Himari Takahashi, Tomoro Warashina, Yui Takahashi, Mayuki Tanaka, Kazushi Suzuki, Teppei Morita, Kazuharu Arakawa","doi":"10.1128/mra.00815-24","DOIUrl":"10.1128/mra.00815-24","url":null,"abstract":"<p><p><i>Serratia plymuthica</i> strain SWSY-3.47 is a Gram-negative, rod-shaped bacteria isolated for its high chitinolytic activity. Here, we report the complete genome of this strain comprised of a single circular chromosome of 5,636,345 bp with a G + C content of 56.0%.</p>","PeriodicalId":18654,"journal":{"name":"Microbiology Resource Announcements","volume":null,"pages":null},"PeriodicalIF":0.7,"publicationDate":"2024-11-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142469978","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Breah LaSarre, Mark L Watson, Emma M Corby, Amelia M Randich
{"title":"Complete genome sequence of marine prosthecate bacterium <i>Fretibacter rubidus</i> type strain JCM 15585.","authors":"Breah LaSarre, Mark L Watson, Emma M Corby, Amelia M Randich","doi":"10.1128/mra.00986-24","DOIUrl":"10.1128/mra.00986-24","url":null,"abstract":"<p><p><i>Fretibacter rubidus</i> is a dimorphic, prosthecate member of the family <i>Maricaulaceae</i>, order Caulobacterales, in the class Alphaproteobacteria. Here, we report the genome of type strain JCM 15585<sup>T</sup> (JC2236<sup>T</sup>), sequenced with Oxford Nanopore Technology.</p>","PeriodicalId":18654,"journal":{"name":"Microbiology Resource Announcements","volume":null,"pages":null},"PeriodicalIF":0.7,"publicationDate":"2024-11-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142469983","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Draft genome sequencing of multidrug-resistant <i>Pseudomonas asiatica</i> strains isolated from dairy cows with clinical mastitis and their farm environment.","authors":"Taniya Sultana, Naim Siddique, Monira Rahaman, Md Morshedur Rahman, Anm Aminoor Rahman, Anup Kumar Talukder, Ziban Chandra Das, M Nazmul Hoque","doi":"10.1128/mra.00907-24","DOIUrl":"10.1128/mra.00907-24","url":null,"abstract":"<p><p>We report, for the first time, the draft genomes of four multidrug-resistant <i>Pseudomonas asiatica</i> strains isolated from milk (2M1), feces (2F1 and 2F2), and farm soil (2S1) samples of dairy cows with clinical mastitis. The assembled genomes of these strains were 5.7 Mbp, 62.8% G + C content, and 50× genome coverage.</p>","PeriodicalId":18654,"journal":{"name":"Microbiology Resource Announcements","volume":null,"pages":null},"PeriodicalIF":0.7,"publicationDate":"2024-11-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142469998","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Whole-genome sequencing of <i>Mycobacterium tuberculosis</i> sublineage L1.1.1.7 from Chiangrai, Thailand.","authors":"Kanin Nuttavuthisit, Wuthiwat Ruangchai, Thavin Bodharamik, Waritta Sawaengdee, Surakameth Mahasirimongkol, Prasit Palittapongarnpim","doi":"10.1128/mra.00663-24","DOIUrl":"10.1128/mra.00663-24","url":null,"abstract":"<p><p><i>Mycobacterium tuberculosis</i> (MTB) presents a global health issue. Various genotypes of MTB have different geographic distributions. The majority of MTB in Thailand belong to lineages 1 and 2. Here, we report the complete genomic sequences of MTB sublineage L1.1.1.7, which is common in Thailand and infrequently identified in other countries.</p>","PeriodicalId":18654,"journal":{"name":"Microbiology Resource Announcements","volume":null,"pages":null},"PeriodicalIF":0.7,"publicationDate":"2024-11-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142291285","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Draft genome sequence of carbapenem resistant <i>Escherichia coli</i> ST2083 carrying NDM-5, TEM-1, and CMY-42.","authors":"Rittwika Banerjee, Ramanakishore V S, Vignesh S, Karthic G, Janani B, Marquess Raj, Kumar Perumal","doi":"10.1128/mra.00519-24","DOIUrl":"10.1128/mra.00519-24","url":null,"abstract":"<p><p>The draft genome sequence of the <i>Escherichia coli</i> strain (CREC-9) of sequence type (ST2083), which was isolated from the urine sample of a 69-year-old male and harbors the antimicrobial resistance genes <i>TEM-1, blaCMY-42,</i> and <i>blaNDM-5</i> encoding resistance to β-lactams, cephalosporins, carbapenems, and fluoroquinolones and coding various virulence factors, is presented here.</p>","PeriodicalId":18654,"journal":{"name":"Microbiology Resource Announcements","volume":null,"pages":null},"PeriodicalIF":0.7,"publicationDate":"2024-11-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142308128","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Yanhui Peng, Heather Fueston, Muhammad Irfan, John Hammond, Diego Morales, Hong Ju, Meghan L Bentz, James Heuser, Mark Burroughs, Maria Lucia Tondella, Michael R Weigand
{"title":"Complete genome sequences of four representative <i>Corynebacterium belfantii</i> strains.","authors":"Yanhui Peng, Heather Fueston, Muhammad Irfan, John Hammond, Diego Morales, Hong Ju, Meghan L Bentz, James Heuser, Mark Burroughs, Maria Lucia Tondella, Michael R Weigand","doi":"10.1128/mra.00755-24","DOIUrl":"10.1128/mra.00755-24","url":null,"abstract":"<p><p>This report describes the complete genome sequence assemblies from four representative isolates of the human pathogen <i>Corynebacterium belfantii</i>. These data provide necessary references to aid accurate sequence-based species discrimination among closely related <i>Corynebacterium</i> spp. pathogens.</p>","PeriodicalId":18654,"journal":{"name":"Microbiology Resource Announcements","volume":null,"pages":null},"PeriodicalIF":0.7,"publicationDate":"2024-11-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142350029","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Eduardo L de Almeida, Paul W O'Toole, Shalome A Bassett
{"title":"Genome sequence of the New Zealand cheese isolate and candidate probiotic strain <i>Lactiplantibacillus plantarum</i> FNZ042.","authors":"Eduardo L de Almeida, Paul W O'Toole, Shalome A Bassett","doi":"10.1128/mra.00647-24","DOIUrl":"10.1128/mra.00647-24","url":null,"abstract":"<p><p>The complete genome sequence of the candidate probiotic strain <i>Lactiplantibacillus plantarum</i> FNZ042 was determined using a hybrid genome assembly comprising data from Illumina and PacBio sequencing platforms. The genome assembly comprised 3,265,637 bp, including the complete circular chromosome and three circular plasmids.</p>","PeriodicalId":18654,"journal":{"name":"Microbiology Resource Announcements","volume":null,"pages":null},"PeriodicalIF":0.7,"publicationDate":"2024-11-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142350038","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}