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Whole-genome sequence of non-rhizobial strain Tardiphaga sp. 709 isolated from the root nodule of Astragalus inopinatus Borris., growing on the Kamchatka Peninsula. 黄芪根瘤非根瘤菌Tardiphaga sp. 709的全基因组序列研究。生长在堪察加半岛。
IF 0.7
Microbiology Resource Announcements Pub Date : 2025-01-16 Epub Date: 2024-12-17 DOI: 10.1128/mra.00923-24
Polina Guro, Irina Kuznetsova, Anna Sazanova, Andrey Belimov, Vera Safronova
{"title":"Whole-genome sequence of non-rhizobial strain <i>Tardiphaga</i> sp. 709 isolated from the root nodule of <i>Astragalus inopinatus</i> Borris., growing on the Kamchatka Peninsula.","authors":"Polina Guro, Irina Kuznetsova, Anna Sazanova, Andrey Belimov, Vera Safronova","doi":"10.1128/mra.00923-24","DOIUrl":"10.1128/mra.00923-24","url":null,"abstract":"<p><p>We report the whole-genome sequence of the non-rhizobial endosymbiotic bacteria <i>Tardiphaga</i> sp. strain 709, which was isolated from the root nodule of <i>Astragalus inopinatus</i> Borris. on the Kamchatka Peninsula, Russia. The genome consists of one chromosome and one plasmid with a total length of 6,359,564 bp and 61.5% of GC content.</p>","PeriodicalId":18654,"journal":{"name":"Microbiology Resource Announcements","volume":" ","pages":"e0092324"},"PeriodicalIF":0.7,"publicationDate":"2025-01-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11737185/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142837787","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Draft genome sequence of the marine halophile Vibrio diabolicus strain 3098. 绘制海洋嗜盐菌diabolicus弧菌3098的基因组序列。
IF 0.7
Microbiology Resource Announcements Pub Date : 2025-01-16 Epub Date: 2024-12-19 DOI: 10.1128/mra.00940-24
Katherine Boas Lichty, Heather E Thomas, Soham M Bhide, Gary P Richards, E Fidelma Boyd
{"title":"Draft genome sequence of the marine halophile <i>Vibrio diabolicus</i> strain 3098.","authors":"Katherine Boas Lichty, Heather E Thomas, Soham M Bhide, Gary P Richards, E Fidelma Boyd","doi":"10.1128/mra.00940-24","DOIUrl":"10.1128/mra.00940-24","url":null,"abstract":"<p><p>Vibrio diabolicus 3098 is a marine halophile, a member of the <i>Gammaproteobacteria</i>. The draft whole-genome sequence is 5.17 Mb and has 4,829 predicted coding sequences divided into two chromosomes and a plasmid. A gene cluster predicted to allow for the catabolism of compatible solutes ectoine and 5-hydroxyectoine was uncovered.</p>","PeriodicalId":18654,"journal":{"name":"Microbiology Resource Announcements","volume":" ","pages":"e0094024"},"PeriodicalIF":0.7,"publicationDate":"2025-01-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11737176/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142854876","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Genome sequence of Bradyrhizobium sp. Ash2021, a free-living Bradyrhizobium species isolated from Pinus radiata forest soil. Bradyrhizobium sp.
IF 0.7
Microbiology Resource Announcements Pub Date : 2025-01-16 Epub Date: 2024-12-16 DOI: 10.1128/mra.00852-24
Charlotte Armstrong, Steve Wakelin
{"title":"Genome sequence of <i>Bradyrhizobium</i> sp. Ash2021, a free-living <i>Bradyrhizobium</i> species isolated from <i>Pinus radiata</i> forest soil.","authors":"Charlotte Armstrong, Steve Wakelin","doi":"10.1128/mra.00852-24","DOIUrl":"10.1128/mra.00852-24","url":null,"abstract":"<p><p><i>Bradyrhizobium</i> sp. Ash2021 is a free-living soil bacterium isolated from a <i>Pinus radiata</i> forest in Canterbury, New Zealand. The genome comprises of a 9,328,819 bp chromosome and a 375,468 bp plasmid. The chromosome harbors biosynthesis pathways for auxins, thiazole-oxazole-modified microcins, and polyketide synthase. The plasmid harbors lactate and GlcNAc metabolism genes.</p>","PeriodicalId":18654,"journal":{"name":"Microbiology Resource Announcements","volume":" ","pages":"e0085224"},"PeriodicalIF":0.7,"publicationDate":"2025-01-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11737075/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142829347","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Draft genome sequences of Flagellimonas sp. MMG031 and Marinobacter sp. MMG032 isolated from the dinoflagellate Symbiodinium pilosum. 绘制从刺毛共生鞭毛藻中分离的鞭毛单胞菌sp. MMG031和海洋杆菌sp. MMG032基因组序列。
IF 0.7
Microbiology Resource Announcements Pub Date : 2025-01-16 Epub Date: 2024-12-10 DOI: 10.1128/mra.00913-24
Morgan V Farrell, Aya M Aljaber, Madison Amoruso, Wyman F Chan, Jiellen R Dael, Mathieu L De Tomas, Emily G Delavega, Jacob M Eslava, Benjamin J Holdbrook-Smith, Precilla Lee, Van Mai, Laith R Michael, Stephanie V Moreno, Jose F Quevedo, Aaron G Roberts, Jorge Villanueva, Carl Westin, Daniela M Zazueta, Nicholas J Shikuma
{"title":"Draft genome sequences of <i>Flagellimonas</i> sp. MMG031 and <i>Marinobacter</i> sp. MMG032 isolated from the dinoflagellate <i>Symbiodinium pilosum</i>.","authors":"Morgan V Farrell, Aya M Aljaber, Madison Amoruso, Wyman F Chan, Jiellen R Dael, Mathieu L De Tomas, Emily G Delavega, Jacob M Eslava, Benjamin J Holdbrook-Smith, Precilla Lee, Van Mai, Laith R Michael, Stephanie V Moreno, Jose F Quevedo, Aaron G Roberts, Jorge Villanueva, Carl Westin, Daniela M Zazueta, Nicholas J Shikuma","doi":"10.1128/mra.00913-24","DOIUrl":"10.1128/mra.00913-24","url":null,"abstract":"<p><p>Here, we report the draft genome sequences of <i>Flagellimonas</i> sp. MMG031 and <i>Marinobacter</i> sp. MMG032, isolated from coral-associated dinoflagellate <i>Symbiodinium pilosum</i>, assembled and analyzed by undergraduate students participating in a Marine Microbial Genomics (MMG) course. A genomic comparison suggests MMG031 and MMG032 are novel species and a resource for restoration and biotechnology.</p>","PeriodicalId":18654,"journal":{"name":"Microbiology Resource Announcements","volume":" ","pages":"e0091324"},"PeriodicalIF":0.7,"publicationDate":"2025-01-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11737131/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142801633","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Whole-genome sequencing of novel pathogenic and multidrug-resistant Kytococcus sedentarius, causing mortality in fish species (Labeo rohita). 导致鱼类死亡的新型致病性和多重耐药的滞留Kytococcus的全基因组测序（Labeo rohita）。
IF 0.7
Microbiology Resource Announcements Pub Date : 2025-01-16 Epub Date: 2024-12-16 DOI: 10.1128/mra.01127-24
Basanta Kumar Das, Vikash Kumar, Suvra Roy, Debasmita Mohanty, Asim Kumar Jana, Ayushman Gadnayak
{"title":"Whole-genome sequencing of novel pathogenic and multidrug-resistant <i>Kytococcus sedentarius</i>, causing mortality in fish species (<i>Labeo rohita</i>).","authors":"Basanta Kumar Das, Vikash Kumar, Suvra Roy, Debasmita Mohanty, Asim Kumar Jana, Ayushman Gadnayak","doi":"10.1128/mra.01127-24","DOIUrl":"10.1128/mra.01127-24","url":null,"abstract":"<p><p>We present a novel pathogenic and multidrug-resistant <i>Kytococcus sedentarius</i> isolated from <i>Labeo rohita</i>. The bacterium belongs to the Micrococcales order and has a genome consisting of 2.59 Mb in length and 71.7% GC content. <i>K. sedentarius</i> contains 2,393 coding gene sequences, 6 rRNA, 51 tRNA, 1 tmRNA, and 2,173 antimicrobial resistance genes.</p>","PeriodicalId":18654,"journal":{"name":"Microbiology Resource Announcements","volume":" ","pages":"e0112724"},"PeriodicalIF":0.7,"publicationDate":"2025-01-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11737163/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142829357","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Draft genomes of two contemporary strains of Babesia divergens. 绘制巴贝斯虫分化株的两个当代菌株的基因组。
IF 0.7
Microbiology Resource Announcements Pub Date : 2025-01-16 Epub Date: 2024-12-13 DOI: 10.1128/mra.00898-24
Ternenge T Apaa, Ben P Jones, Adam M Blanchard, Nicholas Johnson
{"title":"Draft genomes of two contemporary strains of <i>Babesia divergens</i>.","authors":"Ternenge T Apaa, Ben P Jones, Adam M Blanchard, Nicholas Johnson","doi":"10.1128/mra.00898-24","DOIUrl":"10.1128/mra.00898-24","url":null,"abstract":"<p><p><i>Babesia divergens</i>, <i>a</i> major cause of bovine babesiosis with zoonotic potential, was analyzed through genomes Bdiv23B and Bdiv24B following Illumina sequencing of DNA extracted from PCR-positive cattle blood. The genomes comprised 3888 and 4032 predicted coding sequences, respectively, comparable to the reference genome, Rouen 1987, highlighting genomic consistency across isolates.</p>","PeriodicalId":18654,"journal":{"name":"Microbiology Resource Announcements","volume":" ","pages":"e0089824"},"PeriodicalIF":0.7,"publicationDate":"2025-01-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11737035/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142818694","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Draft genome sequence of a non-human primate-derived isolate of Candida parapsilosis. 拟合假丝酵母菌非人类灵长类衍生分离物的基因组序列。
IF 0.7
Microbiology Resource Announcements Pub Date : 2025-01-16 Epub Date: 2024-12-10 DOI: 10.1128/mra.00811-24
Steve A James, Aimee Parker, Catherine Purse, David J Baker, Simon G P Funnell, Simon R Carding
{"title":"Draft genome sequence of a non-human primate-derived isolate of <i>Candida parapsilosis</i>.","authors":"Steve A James, Aimee Parker, Catherine Purse, David J Baker, Simon G P Funnell, Simon R Carding","doi":"10.1128/mra.00811-24","DOIUrl":"10.1128/mra.00811-24","url":null,"abstract":"<p><p><i>Candida parapsilosis</i> is a common human commensal and opportunistic fungal pathogen that is also found in non-human primates (NHPs). Here, we report the first draft sequence of <i>C. parapsilosis</i> NCYC 4418, a fecal isolate from an adult cynomolgus macaque.</p>","PeriodicalId":18654,"journal":{"name":"Microbiology Resource Announcements","volume":" ","pages":"e0081124"},"PeriodicalIF":0.7,"publicationDate":"2025-01-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11737174/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142801629","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Draft genome sequences of evolutionary distant Yersinia species representatives. 绘制进化上遥远的耶尔森菌物种代表的基因组序列。
IF 0.7
Microbiology Resource Announcements Pub Date : 2025-01-16 Epub Date: 2024-12-10 DOI: 10.1128/mra.00996-24
Amanda Brady, Taylor M Garrison, Robert K Ernst, David A Rasko, Matthew B Lawrenz
{"title":"Draft genome sequences of evolutionary distant <i>Yersinia</i> species representatives.","authors":"Amanda Brady, Taylor M Garrison, Robert K Ernst, David A Rasko, Matthew B Lawrenz","doi":"10.1128/mra.00996-24","DOIUrl":"10.1128/mra.00996-24","url":null,"abstract":"<p><p><i>Yersinia pestis</i> is the etiological agent of human plague. However, certain evolutionarily divergent subspecies have different host specificities and virulence capacity compared to the more commonly studied strains with pandemic potential. This resource examines 10 diverse isolates representing some of the most understudied subspecies commonly referred to as <i>Yersinia pestis</i> Pestoides.</p>","PeriodicalId":18654,"journal":{"name":"Microbiology Resource Announcements","volume":" ","pages":"e0099624"},"PeriodicalIF":0.7,"publicationDate":"2025-01-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11737087/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142801635","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Whole genome sequence of a Mycobacterium tuberculosis M64 isolate harboring extensive deletions, including the katG-containing region. 结核分枝杆菌M64分离物的全基因组序列，包含广泛的缺失，包括含有katg的区域。
IF 0.7
Microbiology Resource Announcements Pub Date : 2025-01-16 Epub Date: 2024-12-10 DOI: 10.1128/mra.00745-24
Se-Mi Jeon, Sanghee Park, Seonghan Kim
{"title":"Whole genome sequence of a <i>Mycobacterium tuberculosis</i> M64 isolate harboring extensive deletions, including the <i>katG</i>-containing region.","authors":"Se-Mi Jeon, Sanghee Park, Seonghan Kim","doi":"10.1128/mra.00745-24","DOIUrl":"10.1128/mra.00745-24","url":null,"abstract":"<p><p>Clinical isolates of <i>Mycobacterium tuberculosis</i> M64 strain from South Korea lack the <i>katG</i> gene, which is associated with isoniazid resistance. Herein, we report the whole genome sequence of <i>M. tuberculosis</i> M64, with genomic coverage of 2,791× and a genome size of 4,353,699 bp.</p>","PeriodicalId":18654,"journal":{"name":"Microbiology Resource Announcements","volume":" ","pages":"e0074524"},"PeriodicalIF":0.7,"publicationDate":"2025-01-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11737084/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142801647","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Draft genome sequence and analysis of endophyte Bacillus amyloliquefaciens strain Can02R isolated from the roots of Chenopodium album L. Chenopodium album L.根内生解淀粉芽孢杆菌Can02R基因组序列草图及分析。
IF 0.7
Microbiology Resource Announcements Pub Date : 2025-01-16 Epub Date: 2024-12-17 DOI: 10.1128/mra.01075-24
Vladimir K Chebotar, Anna V Myskova, Margarita Khudyaeva, Oksana V Keleinikova, Maria E Baganova, Alexander N Zaplatkin, Veronika N Pishchik, Elena P Chizhevskaya
{"title":"Draft genome sequence and analysis of endophyte <i>Bacillus amyloliquefaciens</i> strain Can02R isolated from the roots of <i>Chenopodium album</i> L.","authors":"Vladimir K Chebotar, Anna V Myskova, Margarita Khudyaeva, Oksana V Keleinikova, Maria E Baganova, Alexander N Zaplatkin, Veronika N Pishchik, Elena P Chizhevskaya","doi":"10.1128/mra.01075-24","DOIUrl":"10.1128/mra.01075-24","url":null,"abstract":"<p><p>In this study, we sequence, assemble, and analyze the genome of endophyte <i>Bacillus amyloliquefaciens</i> Can02R isolated from the roots of the resurrection plant host, <i>Chenopodium album</i>. The assembly of the strain's genome amounts to 3,965,760 bp and contains 3,989 coding sequences, among which synthetic antibiotic clusters and multidrug resistance transporters can be found.</p>","PeriodicalId":18654,"journal":{"name":"Microbiology Resource Announcements","volume":" ","pages":"e0107524"},"PeriodicalIF":0.7,"publicationDate":"2025-01-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11737157/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142837820","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
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