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Environmental and Spatial Effects on Co-Occurrence Network Size and Taxonomic Similarity in Stream Diatoms, Insects and Fish
IF 6.4 1区 环境科学与生态学
Global Ecology and Biogeography Pub Date : 2024-12-09 DOI: 10.1111/geb.13935
Joseph L. Mruzek, William R. Budnick, Chad A. Larson, Sophia I. Passy
{"title":"Environmental and Spatial Effects on Co-Occurrence Network Size and Taxonomic Similarity in Stream Diatoms, Insects and Fish","authors":"Joseph L. Mruzek, William R. Budnick, Chad A. Larson, Sophia I. Passy","doi":"10.1111/geb.13935","DOIUrl":"https://doi.org/10.1111/geb.13935","url":null,"abstract":"The influences of environmental and spatial processes on species composition have been at the center of metacommunity ecology. Conversely, the relative importance of these processes for species co-occurrences and taxonomic similarity has remained poorly understood. We hypothesised that at a subcontinental scale, shared environmental preference would be the major driver of co-occurrences across species groups. In contrast, co-occurrences due to shared dispersal history were more likely in dispersal-limited taxa. Finally, we tested whether taxa co-occurring due to similar responses to environmental and spatial processes were more taxonomically similar than expected by chance.","PeriodicalId":176,"journal":{"name":"Global Ecology and Biogeography","volume":"9 1","pages":""},"PeriodicalIF":6.4,"publicationDate":"2024-12-09","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142793510","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"环境科学与生态学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Unravelling the Universal Spatial Properties of Coral Reefs
IF 6.4 1区 环境科学与生态学
Global Ecology and Biogeography Pub Date : 2024-12-02 DOI: 10.1111/geb.13939
Àlex Giménez-Romero, Manuel A. Matías, Carlos M. Duarte
{"title":"Unravelling the Universal Spatial Properties of Coral Reefs","authors":"Àlex Giménez-Romero, Manuel A. Matías, Carlos M. Duarte","doi":"10.1111/geb.13939","DOIUrl":"https://doi.org/10.1111/geb.13939","url":null,"abstract":"To characterise the size and geometry of coral reefs on a global scale.","PeriodicalId":176,"journal":{"name":"Global Ecology and Biogeography","volume":"13 1","pages":""},"PeriodicalIF":6.4,"publicationDate":"2024-12-02","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142760400","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"环境科学与生态学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Rethinking Global Hotspots for Threatened Terrestrial Vertebrates
IF 6.4 1区 环境科学与生态学
Global Ecology and Biogeography Pub Date : 2024-11-27 DOI: 10.1111/geb.13942
Pablo Yair Huais, Luis Osorio-Olvera, Javier Maximiliano Cordier, Ana N. Tomba, Jorge Soberón, Rafael Loyola, Javier Nori
{"title":"Rethinking Global Hotspots for Threatened Terrestrial Vertebrates","authors":"Pablo Yair Huais, Luis Osorio-Olvera, Javier Maximiliano Cordier, Ana N. Tomba, Jorge Soberón, Rafael Loyola, Javier Nori","doi":"10.1111/geb.13942","DOIUrl":"https://doi.org/10.1111/geb.13942","url":null,"abstract":"We aimed to delimit hotspots for terrestrial threatened vertebrate species (HTV) through novel macroecological and statistical approaches.","PeriodicalId":176,"journal":{"name":"Global Ecology and Biogeography","volume":"8 1","pages":""},"PeriodicalIF":6.4,"publicationDate":"2024-11-27","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142742803","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"环境科学与生态学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Fine-Grain Predictions Are Key to Accurately Represent Continental-Scale Biodiversity Patterns 细粒度预测是准确呈现大陆尺度生物多样性模式的关键
IF 6.4 1区 环境科学与生态学
Global Ecology and Biogeography Pub Date : 2024-11-22 DOI: 10.1111/geb.13934
Jeremy M. Cohen, Walter Jetz
{"title":"Fine-Grain Predictions Are Key to Accurately Represent Continental-Scale Biodiversity Patterns","authors":"Jeremy M. Cohen, Walter Jetz","doi":"10.1111/geb.13934","DOIUrl":"https://doi.org/10.1111/geb.13934","url":null,"abstract":"As global change accelerates, accurate predictions of species distributions and biodiversity patterns are critical to limit biodiversity loss. Numerous studies have found that coarse-grain species distribution models (SDMs) perform poorly relative to fine-grain models because they mismatch environmental information with observations. However, it remains unclear how grain-size biases vary in intensity across space and time, possibly generating inaccurate predictions for specific regions, seasons or species. For example, coarse-grain biases may intensify in patchy, discontinuous landscapes. Such biases may accumulate to produce highly misleading estimates of continental and seasonal biodiversity patterns.","PeriodicalId":176,"journal":{"name":"Global Ecology and Biogeography","volume":"13 1","pages":""},"PeriodicalIF":6.4,"publicationDate":"2024-11-22","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142684751","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"环境科学与生态学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Thermal Forcing Versus Chilling? Misspecification of Temperature Controls in Spring Phenology Models 热强迫还是寒冷?春季物候模型中温度控制的错误规范
IF 6.3 1区 环境科学与生态学
Global Ecology and Biogeography Pub Date : 2024-10-28 DOI: 10.1111/geb.13932
Xiaojie Gao, Andrew D. Richardson, Mark A. Friedl, Minkyu Moon, Josh M. Gray
{"title":"Thermal Forcing Versus Chilling? Misspecification of Temperature Controls in Spring Phenology Models","authors":"Xiaojie Gao,&nbsp;Andrew D. Richardson,&nbsp;Mark A. Friedl,&nbsp;Minkyu Moon,&nbsp;Josh M. Gray","doi":"10.1111/geb.13932","DOIUrl":"10.1111/geb.13932","url":null,"abstract":"<div>\u0000 \u0000 \u0000 <section>\u0000 \u0000 <h3> Background</h3>\u0000 \u0000 <p>Climate-change-induced shifts in the timing of leaf emergence during spring have been widely documented and have important ecological consequences. However, mechanistic knowledge regarding what controls the timing of spring leaf emergence is incomplete. Field-based studies under natural conditions suggest that climate-warming-induced decreases in cold temperature accumulation (chilling) have expanded the dormancy duration or reduced the sensitivity of plants to warming temperatures (thermal forcing) during spring, thereby slowing the rate at which the timing of leaf emergence is shifting earlier in response to ongoing climate change. However, recent studies have argued that the apparent reductions in temperature sensitivity may arise from artefacts in the way that temperature sensitivity is calculated, while other studies based on statistical and mechanistic models specifically designed to quantify the role of chilling have shown conflicting results.</p>\u0000 </section>\u0000 \u0000 <section>\u0000 \u0000 <h3> Methods</h3>\u0000 \u0000 <p>We analysed four commonly used combinations of phenology and temperature datasets obtained from remote sensing and ground observations to elucidate whether current model-based approaches robustly quantify how chilling, in concert with thermal forcing, controls the timing of leaf emergence during spring under current climate conditions.</p>\u0000 </section>\u0000 \u0000 <section>\u0000 \u0000 <h3> Results</h3>\u0000 \u0000 <p>We show that widely used modeling approaches that are calibrated using field-based observations misspecify the role of chilling under current climate conditions as a result of statistical artefacts inherent to the way that chilling is parameterised. Our results highlight the limitations of existing modelling approaches and observational data in quantifying how chilling affects the timing of spring leaf emergence and suggest that decreasing chilling arising from climate warming may not constrain near-future shifts towards earlier leaf emergence in extra-tropical ecosystems worldwide.</p>\u0000 </section>\u0000 </div>","PeriodicalId":176,"journal":{"name":"Global Ecology and Biogeography","volume":"33 12","pages":""},"PeriodicalIF":6.3,"publicationDate":"2024-10-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142519535","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"环境科学与生态学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Predicting Landscape Conversion Impact on Small Mammal Occurrence and the Transmission of Parasites in the Atlantic Forest 预测景观改造对大西洋森林小型哺乳动物出现和寄生虫传播的影响
IF 6.3 1区 环境科学与生态学
Global Ecology and Biogeography Pub Date : 2024-10-27 DOI: 10.1111/geb.13933
Ana Paula L. Costa, Gisele R. Winck, Bernardo R. Teixeira, Rosana Gentile, Paulo S. D'Andrea, Emerson M. Vieira, Renata Pardini, Thomas Püttker, Cecilia S. Andreazzi
{"title":"Predicting Landscape Conversion Impact on Small Mammal Occurrence and the Transmission of Parasites in the Atlantic Forest","authors":"Ana Paula L. Costa,&nbsp;Gisele R. Winck,&nbsp;Bernardo R. Teixeira,&nbsp;Rosana Gentile,&nbsp;Paulo S. D'Andrea,&nbsp;Emerson M. Vieira,&nbsp;Renata Pardini,&nbsp;Thomas Püttker,&nbsp;Cecilia S. Andreazzi","doi":"10.1111/geb.13933","DOIUrl":"10.1111/geb.13933","url":null,"abstract":"&lt;div&gt;\u0000 \u0000 \u0000 &lt;section&gt;\u0000 \u0000 &lt;h3&gt; Aim&lt;/h3&gt;\u0000 \u0000 &lt;p&gt;Changes in landscape configuration significantly impact ecosystems and the services they provide, including disease regulation for both humans and wildlife. Land use conversion usually favors disturbed-adapted species, which are often known reservoirs of zoonotic parasites, thereby potentially escalating spillover events (i.e., the transmission of parasites to new hosts, including humans). Here we aimed to investigate how alterations in landscape use and configuration influence the distribution and co-occurrence of potential hosts of zoonotic and epizootic parasites.&lt;/p&gt;\u0000 &lt;/section&gt;\u0000 \u0000 &lt;section&gt;\u0000 \u0000 &lt;h3&gt; Location&lt;/h3&gt;\u0000 \u0000 &lt;p&gt;Brazilian Atlantic Forest.&lt;/p&gt;\u0000 &lt;/section&gt;\u0000 \u0000 &lt;section&gt;\u0000 \u0000 &lt;h3&gt; Time Period&lt;/h3&gt;\u0000 \u0000 &lt;p&gt;Data collection spanned from 1997 to 2019.&lt;/p&gt;\u0000 \u0000 &lt;p&gt;Major taxa studied small mammals.&lt;/p&gt;\u0000 &lt;/section&gt;\u0000 \u0000 &lt;section&gt;\u0000 \u0000 &lt;h3&gt; Methods&lt;/h3&gt;\u0000 \u0000 &lt;p&gt;We integrated ecological network metrics and joint distribution models while accounting for phylogenetic relationships and functional traits to answer two main questions: (1) do small mammal species considered central hosts in the transmission of parasites exhibit a higher probability of occurrence in landscapes with reduced native vegetation areas? (2) Do small mammal hosts that share a higher number of parasites have higher co-occurrence probabilities?&lt;/p&gt;\u0000 &lt;/section&gt;\u0000 \u0000 &lt;section&gt;\u0000 \u0000 &lt;h3&gt; Results&lt;/h3&gt;\u0000 \u0000 &lt;p&gt;Our results demonstrated that species identified as significant hosts in our centrality network analysis displayed an increased probability of occurrence in landscapes that are both more fragmented and have a higher proportion of farming areas, hence fewer native vegetation areas. Regarding the relationship between species co-occurrence and parasite sharing, our findings indicated that most strong co-occurrences were prevalent within groups with higher parasite fauna similarity, but not all species sharing parasites had a higher probability of co-occurring.&lt;/p&gt;\u0000 &lt;/section&gt;\u0000 \u0000 &lt;section&gt;\u0000 \u0000 &lt;h3&gt; Conclusions&lt;/h3&gt;\u0000 \u0000 &lt;p&gt;Here we highlight the effects of landscape conversion on small mammal species, including how different configurations of land use can influence both central and non-central host occurrences. Besides, our results also indicate that parasite transmission may be overestimated when the co-occurrence probability of potential host species is not considered. We highly recommend incor","PeriodicalId":176,"journal":{"name":"Global Ecology and Biogeography","volume":"33 12","pages":""},"PeriodicalIF":6.3,"publicationDate":"2024-10-27","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1111/geb.13933","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142519532","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"环境科学与生态学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Spatial Variation in Upper Limits of Coral Cover on the Great Barrier Reef 大堡礁珊瑚覆盖上限的空间变化
IF 6.3 1区 环境科学与生态学
Global Ecology and Biogeography Pub Date : 2024-10-26 DOI: 10.1111/geb.13928
Mariana Álvarez-Noriega, Juan C. Ortiz, Daniela M. Ceccarelli, Michael J. Emslie, Katharina E. Fabricius, Michelle J. Jonker, Marji Puotinen, Barbara J. Robson, Chris M. Roelfsema, Tane H. Sinclair-Taylor, Renata Ferrari
{"title":"Spatial Variation in Upper Limits of Coral Cover on the Great Barrier Reef","authors":"Mariana Álvarez-Noriega,&nbsp;Juan C. Ortiz,&nbsp;Daniela M. Ceccarelli,&nbsp;Michael J. Emslie,&nbsp;Katharina E. Fabricius,&nbsp;Michelle J. Jonker,&nbsp;Marji Puotinen,&nbsp;Barbara J. Robson,&nbsp;Chris M. Roelfsema,&nbsp;Tane H. Sinclair-Taylor,&nbsp;Renata Ferrari","doi":"10.1111/geb.13928","DOIUrl":"10.1111/geb.13928","url":null,"abstract":"<div>\u0000 \u0000 \u0000 <section>\u0000 \u0000 <h3> Aim</h3>\u0000 \u0000 <p>Identifying the maximum coral cover that a coral community can sustain (i.e., its ‘upper limit’) is important for predicting community dynamics and improving management strategies. Here, we quantify the relationship between estimated upper limits and key environmental factors on coral reefs: hard substrate availability, temperature and water clarity.</p>\u0000 </section>\u0000 \u0000 <section>\u0000 \u0000 <h3> Location</h3>\u0000 \u0000 <p>Great Barrier Reef (GBR), Australia (over 1400 km).</p>\u0000 </section>\u0000 \u0000 <section>\u0000 \u0000 <h3> Time Period</h3>\u0000 \u0000 <p>1990 to 2022.</p>\u0000 </section>\u0000 \u0000 <section>\u0000 \u0000 <h3> Major Taxa Studied</h3>\u0000 \u0000 <p>Scleractinian corals.</p>\u0000 </section>\u0000 \u0000 <section>\u0000 \u0000 <h3> Methods</h3>\u0000 \u0000 <p>We used 32 years of data on coral cover around reef perimeters. Each reef was divided into four wave-exposure habitats depending on prevailing wind conditions. For each site, we determined if hard coral cover had reached a plateau or upper limit. Next, we extracted existing estimates of hard substrate availability, modelled water temperature and Secchi depth. Then, we quantified the relationship between these environmental variables and the upper limits.</p>\u0000 </section>\u0000 \u0000 <section>\u0000 \u0000 <h3> Results</h3>\u0000 \u0000 <p>We found varying upper limits across the GBR, with a median of 33% coral cover and only 17% of the estimated upper limits exceeded 50% coral cover. Upper limits increased towards the southern reefs. Our results show that upper limits increased with increasing hard substrate availability and decreased with temperature and, to a lesser extent, with water clarity.</p>\u0000 </section>\u0000 \u0000 <section>\u0000 \u0000 <h3> Main Conclusions</h3>\u0000 \u0000 <p>The upper limits estimated in this study are much lower than what is commonly assumed when modelling ecological dynamics, most likely resulting in predicted recovery rates being inappropriately high. Although hard substrate ultimately restricted upper limits, there are mechanisms constraining the proportion of hard substrate that is covered by hard corals. The negative relationship between temperature and upper limits cannot be explained by changes in macroalgal abundance but may be related to changes in species composition. The quantitative relationships between the upper limits of coral cover and environmental variables will provide critical information to prioritise sites for management interventions.</p>\u0000 </section>\u0000 </div>","PeriodicalId":176,"journal":{"name":"Global Ecology and Biogeography","volume":"33 12","pages":""},"PeriodicalIF":6.3,"publicationDate":"2024-10-26","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142490311","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"环境科学与生态学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Ecological but Not Biological Traits of European Riverine Invertebrates Respond Consistently to Anthropogenic Impacts 欧洲沿河无脊椎动物的生态特征而非生物特征对人类活动影响的反应一致
IF 6.3 1区 环境科学与生态学
Global Ecology and Biogeography Pub Date : 2024-10-26 DOI: 10.1111/geb.13931
James S. Sinclair, Rachel Stubbington, Ralf B. Schäfer, Libuše Barešová, Núria Bonada, Zoltán Csabai, J. Iwan Jones, Aitor Larrañaga, John F. Murphy, Petr Pařil, Marek Polášek, Jes J. Rasmussen, Michal Straka, Gábor Várbíró, Ralf C. M. Verdonschot, Ellen A. R. Welti, Peter Haase
{"title":"Ecological but Not Biological Traits of European Riverine Invertebrates Respond Consistently to Anthropogenic Impacts","authors":"James S. Sinclair,&nbsp;Rachel Stubbington,&nbsp;Ralf B. Schäfer,&nbsp;Libuše Barešová,&nbsp;Núria Bonada,&nbsp;Zoltán Csabai,&nbsp;J. Iwan Jones,&nbsp;Aitor Larrañaga,&nbsp;John F. Murphy,&nbsp;Petr Pařil,&nbsp;Marek Polášek,&nbsp;Jes J. Rasmussen,&nbsp;Michal Straka,&nbsp;Gábor Várbíró,&nbsp;Ralf C. M. Verdonschot,&nbsp;Ellen A. R. Welti,&nbsp;Peter Haase","doi":"10.1111/geb.13931","DOIUrl":"10.1111/geb.13931","url":null,"abstract":"<div>\u0000 \u0000 \u0000 <section>\u0000 \u0000 <h3> Aim</h3>\u0000 \u0000 <p>To determine which riverine invertebrate traits respond consistently to anthropogenic impacts across multiple biogeographic regions.</p>\u0000 </section>\u0000 \u0000 <section>\u0000 \u0000 <h3> Location</h3>\u0000 \u0000 <p>Europe.</p>\u0000 </section>\u0000 \u0000 <section>\u0000 \u0000 <h3> Time Period</h3>\u0000 \u0000 <p>1981–2021.</p>\u0000 </section>\u0000 \u0000 <section>\u0000 \u0000 <h3> Major Taxa Studied</h3>\u0000 \u0000 <p>Riverine invertebrates.</p>\u0000 </section>\u0000 \u0000 <section>\u0000 \u0000 <h3> Methods</h3>\u0000 \u0000 <p>We compiled a database of riverine invertebrate community time series for 673 sites across six European countries spanning six freshwater ecoregions. We compared trait responses to anthropogenic impacts (quantified as changes in ‘ecological quality’) among regions for seven ‘ecological’ traits, which reflect habitat preferences, and nine ‘biological’ traits (e.g., morphology or life history), which represent taxon-specific attributes that can influence ecosystem processes.</p>\u0000 </section>\u0000 \u0000 <section>\u0000 \u0000 <h3> Results</h3>\u0000 \u0000 <p>Four ecological traits (current, microhabitat, salinity and trophic preferences) and one biological trait (dispersal mode) responded consistently across regions. These responses were primarily driven by spatial differences among poorer to better quality sites. Responses to temporal changes in quality were comparable but less pronounced.</p>\u0000 </section>\u0000 \u0000 <section>\u0000 \u0000 <h3> Main Conclusions</h3>\u0000 \u0000 <p>Consistent responses to anthropogenic impacts across multiple ecological traits indicate these traits may improve broader scale measurements, comparisons and predictions of community responses. However, we could not use ecological traits to identify the actions of specific stressors because multiple traits always responded as a group. Inconsistent responses across almost all biological traits indicated that these traits may be less predictive of impacts across regions. Predictions of how biological traits, and associated ecosystem processes, respond to anthropogenic impacts may be most effective at regional scales where responses are more consistent.</p>\u0000 </section>\u0000 </div>","PeriodicalId":176,"journal":{"name":"Global Ecology and Biogeography","volume":"33 12","pages":""},"PeriodicalIF":6.3,"publicationDate":"2024-10-26","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1111/geb.13931","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142490696","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"环境科学与生态学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
AVOTREX: A Global Dataset of Extinct Birds and Their Traits AVOTREX:已灭绝鸟类及其特征的全球数据集
IF 6.3 1区 环境科学与生态学
Global Ecology and Biogeography Pub Date : 2024-10-24 DOI: 10.1111/geb.13927
Ferran Sayol, Joseph P. Wayman, Paul Dufour, Thomas E. Martin, Julian P. Hume, Maria Wagner Jørgensen, Natàlia Martínez-Rubio, Ariadna Sanglas, Filipa C. Soares, Rob Cooke, Chase D. Mendenhall, Jay R. Margolis, Juan Carlos Illera, Rhys Lemoine, Eva Benavides, Oriol Lapiedra, Kostas A. Triantis, Alex L. Pigot, Joseph A. Tobias, Søren Faurby, Thomas J. Matthews
{"title":"AVOTREX: A Global Dataset of Extinct Birds and Their Traits","authors":"Ferran Sayol,&nbsp;Joseph P. Wayman,&nbsp;Paul Dufour,&nbsp;Thomas E. Martin,&nbsp;Julian P. Hume,&nbsp;Maria Wagner Jørgensen,&nbsp;Natàlia Martínez-Rubio,&nbsp;Ariadna Sanglas,&nbsp;Filipa C. Soares,&nbsp;Rob Cooke,&nbsp;Chase D. Mendenhall,&nbsp;Jay R. Margolis,&nbsp;Juan Carlos Illera,&nbsp;Rhys Lemoine,&nbsp;Eva Benavides,&nbsp;Oriol Lapiedra,&nbsp;Kostas A. Triantis,&nbsp;Alex L. Pigot,&nbsp;Joseph A. Tobias,&nbsp;Søren Faurby,&nbsp;Thomas J. Matthews","doi":"10.1111/geb.13927","DOIUrl":"10.1111/geb.13927","url":null,"abstract":"<div>\u0000 \u0000 \u0000 <section>\u0000 \u0000 <h3> Motivation</h3>\u0000 \u0000 <p>Human activities have been reshaping the natural world for tens of thousands of years, leading to the extinction of hundreds of bird species. Past research has provided evidence of extinction selectivity towards certain groups of species, but trait information is lacking for the majority of clades, especially for prehistoric extinctions identified only through subfossil remains. This incomplete knowledge potentially obscures the structure of natural communities, undermining our ability to infer changes in biodiversity across space and time, including trends in functional and phylogenetic diversity. Biases in currently available trait data also limit our ability to identify drivers and processes of extinction. Here we present AVOTREX, an open-access database of species traits for all birds known to have gone extinct in the last 130,000 years. This database provides detailed morphological information for 610 extinct species, along with a pipeline to build phylogenetic trees that include these extinct species.</p>\u0000 </section>\u0000 \u0000 <section>\u0000 \u0000 <h3> Main Types of Variables Contained</h3>\u0000 \u0000 <p>For each extinct bird species, we provide information on the taxonomy, geographic location, and period of extinction. We also present data on island endemicity, flight ability, and body mass, as well as standard measurements of external (matching the AVONET database of extant birds) and skeletal morphology from museum specimens where available. To ensure comprehensive morphological data coverage, we estimate all missing morphological measurements using a data imputation technique based on machine learning. Finally, we provide an R package to graft all extinct species onto a global phylogeny of extant species (BirdTree).</p>\u0000 </section>\u0000 \u0000 <section>\u0000 \u0000 <h3> Spatial Location and Grain</h3>\u0000 \u0000 <p>Global.</p>\u0000 </section>\u0000 \u0000 <section>\u0000 \u0000 <h3> Time Period and Grain</h3>\u0000 \u0000 <p>All known globally extinct bird species from 130,000 years ago up until 2024.</p>\u0000 </section>\u0000 \u0000 <section>\u0000 \u0000 <h3> Major Taxa and Level of Measurement</h3>\u0000 \u0000 <p>Birds (Class Aves), species level.</p>\u0000 </section>\u0000 \u0000 <section>\u0000 \u0000 <h3> Software Format</h3>\u0000 \u0000 <p>Spreadsheets (.csv) stored in Dryad.</p>\u0000 </section>\u0000 </div>","PeriodicalId":176,"journal":{"name":"Global Ecology and Biogeography","volume":"33 12","pages":""},"PeriodicalIF":6.3,"publicationDate":"2024-10-24","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142490044","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"环境科学与生态学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
FreshLanDiv: A Global Database of Freshwater Biodiversity Across Different Land Uses FreshLanDiv:不同土地用途淡水生物多样性全球数据库
IF 6.3 1区 环境科学与生态学
Global Ecology and Biogeography Pub Date : 2024-10-24 DOI: 10.1111/geb.13917
Minghua Shen, Roel van Klink, Alban Sagouis, Danielle K. Petsch, Deborah Atieno Abong'o, Janne Alahuhta, Salman Abdo Al-Shami, Laura Cecilia Armendáriz, Mi-Jung Bae, Tiago Octavio Begot, Jerome Belliard, Jonathan Peter Benstead, Francieli F. Bomfim, Emile Bredenhand, William R. Budnick, Marcos Callisto, Lenize Batista Calvão, Claudia Patricia Camacho-Rozo, Miguel Cañedo-Argüelles, Fernando Geraldo Carvalho, Jacqueline Chapman, Lauren Chapman, Qiuwen Chen, Barry Chernoff, Luciana Cibils-Martina, Gerard Patrick Closs, Juliano J. Corbi, Erlane José Cunha, Almir Manoel Cunico, Patricio De los Rios-Escalante, Sylvain Dolédec, Barbara Dunck, Augustine Ovie Edegbene, Augustin C. Engman, Tibor Erős, Katharina Eichbaum Esteves, Ruan Carlos Pires Faquim, Ana Paula Justino Faria, Claudia Maris Ferreira, Márcio Cunha Ferreira, Pablo Fierro, Pâmela V. Freitas, Vincent Fugère, Thiago Deruza Garcia, Xingli Giam, Gabriel Murilo Ribeiro Gonino, Juan David González-Trujillo, Éder André Gubiani, Neusa Hamada, Roger John Haro, Luiz Ubiratan Hepp, Guido A. Herrera-R, Matthew J. Hill, A. Nurul Huda, Carlos Iniguez-Armijos, Aurélien Jamoneau, Micael Jonsson, Leandro Juen, Wilbert T. Kadye, Kahirun Kahirun, Aventino Kasangaki, Chad A. Larson, Alexandre Leandro Pereira, Thibault Leboucher, Gustavo Figueiredo Marques Leite, Dunhai Li, Ana Luiza-Andrade, Sarah H. Luke, Matthew Joseph Lundquist, Daniela Lupi, Jorge Machuca-Sepúlveda, Messias Alfredo Macuiane, Nestor Javier Mancera-Rodriguez, Javier A. Márquez, Renato Tavares Martins, Frank O. Masese, Marcia S. Meixler, Thaisa Sala Michelan, María José Monge-Salazar, Joseph L. Mruzek, Hernan Diego Mugni, Hilton Garikai Taambuka Ndagurwa, Augustine Niba, Jorge Nimptsch, Rodolfo Novelo-Gutiérrez, Hannington Ochieng, Rodrigo Pacheco-Díaz, Young-Seuk Park, Sophia I. Passy, Richard G. Pearson, Alexandre Peressin, Eduardo Périco, Mateus Marques Pires, Helen Poulos, Romina E. Principe, Bruno S. Prudente, Blanca Ríos-Touma, Renata Ruaro, Juan J. Schmitter-Soto, Fabiana Schneck, Uwe Horst Schulz, Chellappa Selvakumar, Chhatra Mani Sharma, Tadeu Siqueira, Marina Laura Solis, Raniere Garcez Costa Sousa, Emily H. Stanley, Csilla Stenger-Kovács, Evelyne Tales, Fabrício Barreto Teresa, Ian Thornhill, Juliette Tison-Rosebery, Thiago Bernardi Vieira, Sebastián Villada-Bedoya, James C. White, Paul J. Wood, Zhicai Xie, Catherine M. Yule, João Antonio Cyrino Zequi, Jonathan M. Chase
{"title":"FreshLanDiv: A Global Database of Freshwater Biodiversity Across Different Land Uses","authors":"Minghua Shen,&nbsp;Roel van Klink,&nbsp;Alban Sagouis,&nbsp;Danielle K. Petsch,&nbsp;Deborah Atieno Abong'o,&nbsp;Janne Alahuhta,&nbsp;Salman Abdo Al-Shami,&nbsp;Laura Cecilia Armendáriz,&nbsp;Mi-Jung Bae,&nbsp;Tiago Octavio Begot,&nbsp;Jerome Belliard,&nbsp;Jonathan Peter Benstead,&nbsp;Francieli F. Bomfim,&nbsp;Emile Bredenhand,&nbsp;William R. Budnick,&nbsp;Marcos Callisto,&nbsp;Lenize Batista Calvão,&nbsp;Claudia Patricia Camacho-Rozo,&nbsp;Miguel Cañedo-Argüelles,&nbsp;Fernando Geraldo Carvalho,&nbsp;Jacqueline Chapman,&nbsp;Lauren Chapman,&nbsp;Qiuwen Chen,&nbsp;Barry Chernoff,&nbsp;Luciana Cibils-Martina,&nbsp;Gerard Patrick Closs,&nbsp;Juliano J. Corbi,&nbsp;Erlane José Cunha,&nbsp;Almir Manoel Cunico,&nbsp;Patricio De los Rios-Escalante,&nbsp;Sylvain Dolédec,&nbsp;Barbara Dunck,&nbsp;Augustine Ovie Edegbene,&nbsp;Augustin C. Engman,&nbsp;Tibor Erős,&nbsp;Katharina Eichbaum Esteves,&nbsp;Ruan Carlos Pires Faquim,&nbsp;Ana Paula Justino Faria,&nbsp;Claudia Maris Ferreira,&nbsp;Márcio Cunha Ferreira,&nbsp;Pablo Fierro,&nbsp;Pâmela V. Freitas,&nbsp;Vincent Fugère,&nbsp;Thiago Deruza Garcia,&nbsp;Xingli Giam,&nbsp;Gabriel Murilo Ribeiro Gonino,&nbsp;Juan David González-Trujillo,&nbsp;Éder André Gubiani,&nbsp;Neusa Hamada,&nbsp;Roger John Haro,&nbsp;Luiz Ubiratan Hepp,&nbsp;Guido A. Herrera-R,&nbsp;Matthew J. Hill,&nbsp;A. Nurul Huda,&nbsp;Carlos Iniguez-Armijos,&nbsp;Aurélien Jamoneau,&nbsp;Micael Jonsson,&nbsp;Leandro Juen,&nbsp;Wilbert T. Kadye,&nbsp;Kahirun Kahirun,&nbsp;Aventino Kasangaki,&nbsp;Chad A. Larson,&nbsp;Alexandre Leandro Pereira,&nbsp;Thibault Leboucher,&nbsp;Gustavo Figueiredo Marques Leite,&nbsp;Dunhai Li,&nbsp;Ana Luiza-Andrade,&nbsp;Sarah H. Luke,&nbsp;Matthew Joseph Lundquist,&nbsp;Daniela Lupi,&nbsp;Jorge Machuca-Sepúlveda,&nbsp;Messias Alfredo Macuiane,&nbsp;Nestor Javier Mancera-Rodriguez,&nbsp;Javier A. Márquez,&nbsp;Renato Tavares Martins,&nbsp;Frank O. Masese,&nbsp;Marcia S. Meixler,&nbsp;Thaisa Sala Michelan,&nbsp;María José Monge-Salazar,&nbsp;Joseph L. Mruzek,&nbsp;Hernan Diego Mugni,&nbsp;Hilton Garikai Taambuka Ndagurwa,&nbsp;Augustine Niba,&nbsp;Jorge Nimptsch,&nbsp;Rodolfo Novelo-Gutiérrez,&nbsp;Hannington Ochieng,&nbsp;Rodrigo Pacheco-Díaz,&nbsp;Young-Seuk Park,&nbsp;Sophia I. Passy,&nbsp;Richard G. Pearson,&nbsp;Alexandre Peressin,&nbsp;Eduardo Périco,&nbsp;Mateus Marques Pires,&nbsp;Helen Poulos,&nbsp;Romina E. Principe,&nbsp;Bruno S. Prudente,&nbsp;Blanca Ríos-Touma,&nbsp;Renata Ruaro,&nbsp;Juan J. Schmitter-Soto,&nbsp;Fabiana Schneck,&nbsp;Uwe Horst Schulz,&nbsp;Chellappa Selvakumar,&nbsp;Chhatra Mani Sharma,&nbsp;Tadeu Siqueira,&nbsp;Marina Laura Solis,&nbsp;Raniere Garcez Costa Sousa,&nbsp;Emily H. Stanley,&nbsp;Csilla Stenger-Kovács,&nbsp;Evelyne Tales,&nbsp;Fabrício Barreto Teresa,&nbsp;Ian Thornhill,&nbsp;Juliette Tison-Rosebery,&nbsp;Thiago Bernardi Vieira,&nbsp;Sebastián Villada-Bedoya,&nbsp;James C. White,&nbsp;Paul J. Wood,&nbsp;Zhicai Xie,&nbsp;Catherine M. Yule,&nbsp;João Antonio Cyrino Zequi,&nbsp;Jonathan M. Chase","doi":"10.1111/geb.13917","DOIUrl":"10.1111/geb.13917","url":null,"abstract":"<div>\u0000 \u0000 \u0000 <section>\u0000 \u0000 <h3> Motivation</h3>\u0000 \u0000 <p>Freshwater ecosystems have been heavily impacted by land-use changes, but data syntheses on these impacts are still limited. Here, we compiled a global database encompassing 241 studies with species abundance data (from multiple biological groups and geographic locations) across sites with different land-use categories. This compilation will be useful for addressing questions regarding land-use change and its impact on freshwater biodiversity.</p>\u0000 </section>\u0000 \u0000 <section>\u0000 \u0000 <h3> Main Types of Variables Contained</h3>\u0000 \u0000 <p>The database includes metadata of each study, sites location, sample methods, sample time, land-use category and abundance of each taxon.</p>\u0000 </section>\u0000 \u0000 <section>\u0000 \u0000 <h3> Spatial Location and Grain</h3>\u0000 \u0000 <p>The database contains data from across the globe, with 85% of the sites having well-defined geographical coordinates.</p>\u0000 </section>\u0000 \u0000 <section>\u0000 \u0000 <h3> Major Taxa and Level of Measurement</h3>\u0000 \u0000 <p>The database covers all major freshwater biological groups including algae, macrophytes, zooplankton, macroinvertebrates, fish and amphibians.</p>\u0000 </section>\u0000 </div>","PeriodicalId":176,"journal":{"name":"Global Ecology and Biogeography","volume":"33 12","pages":""},"PeriodicalIF":6.3,"publicationDate":"2024-10-24","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1111/geb.13917","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142490073","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"环境科学与生态学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
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