Evolutionary Applications最新文献

{"title":"Effects of Social Structure on Effective Population Size Change Estimates","authors":"Bárbara Ribeiro Parreira,&nbsp;Shyam Gopalakrishnan,&nbsp;Lounès Chikhi","doi":"10.1111/eva.70063","DOIUrl":"10.1111/eva.70063","url":null,"abstract":"<p>Most methods currently used to infer the “demographic history of species” interpret this expression as a history of population size changes. The detection, quantification, and dating of demographic changes often rely on the assumption that population structure can be neglected. However, most vertebrates are typically organized in populations subdivided into social groups that are usually ignored in the interpretation of genetic data. This could be problematic since an increasing number of studies have shown that population structure can generate spurious signatures of population size change. Here, we simulate microsatellite data from a species subdivided into social groups where reproduction occurs according to different mating systems (monogamy, polygynandry, and polygyny). We estimate the effective population size (<i>N</i>_e) and quantify the effect of social structure on estimates of changes in <i>N</i>_e. We analyze the simulated data with two widely used methods for demographic inference. The first approach, BOTTLENECK, tests whether the samples are at mutation–drift equilibrium and thus whether a single <i>N</i>_e can be estimated. The second approach, msvar, aims at quantifying and dating changes in <i>N</i>_e. We find that social structure may lead to signals of departure from mutation–drift equilibrium including signals of expansion and bottlenecks. We also find that expansion signals may be observed under simple stationary Wright–Fisher models with low diversity. Since small populations tend to characterize many endangered species, we stress that methods trying to infer <i>N</i>_e should be interpreted with care and validated with simulated data incorporating information about structure. Spurious expansion signals due to social structure can mask critical population size changes. These can obscure true bottleneck events and be particularly problematic in endangered species.</p>","PeriodicalId":168,"journal":{"name":"Evolutionary Applications","volume":"18 1","pages":""},"PeriodicalIF":3.5,"publicationDate":"2025-01-14","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11732743/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142996988","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Genetic Rescue of the Dinaric Lynx Population: Insights for Conservation From Genetic Monitoring and Individual-Based Modelling","authors":"Elena Pazhenkova,&nbsp;Matej Bartol,&nbsp;Barbara Boljte,&nbsp;Urša Fležar,&nbsp;Andrea Gazzola,&nbsp;Tomislav Gomerčić,&nbsp;Marjeta Konec,&nbsp;Ivan Kos,&nbsp;Miha Krofel,&nbsp;Jakub Kubala,&nbsp;Ladislav Paule,&nbsp;Mihai Pop,&nbsp;Hubert Potočnik,&nbsp;Barbara Promberger,&nbsp;Robin Rigg,&nbsp;Teodora Sin,&nbsp;Magda Sindičić,&nbsp;Vedran Slijepčević,&nbsp;Astrid Vik Stronen,&nbsp;Ira Topličanec,&nbsp;Tomaž Skrbinšek","doi":"10.1111/eva.70045","DOIUrl":"10.1111/eva.70045","url":null,"abstract":"<p>Inbreeding depression poses a severe threat to small populations, leading to the fixation of deleterious mutations and decreased survival probability. While the establishment of natural gene flow between populations is an ideal long-term solution, its practical implementation is often challenging. Reinforcement of populations by translocating individuals from larger populations is a viable strategy for reducing inbreeding, increasing genetic diversity and potentially saving populations from extinction. The Dinaric population of Eurasian lynx (<i>Lynx lynx</i>) has faced high inbreeding levels, with effective inbreeding reaching 0.316 in 2019, endangering the population's survival. To counteract this, population reinforcement was implemented between 2019 and 2023, involving the translocation of 12 individuals from the Carpathian Mountains to the Dinaric Mountains of Slovenia and Croatia. We conducted comprehensive genetic monitoring in this area, gathering 588 non-invasive and tissue samples, which were used for individual identification and estimation of population genetic parameters. We used stochastic modelling to assess the long-term viability of the Dinaric lynx population post-translocation and formulate effective conservation strategies. The model predicts that, despite significant improvement of genetic diversity after translocations, inbreeding will return to critical levels within 45 years. Our results highlight the fact that reinforcement is just the first step and that long-term genetic management is needed to keep the population from sliding back towards extinction. The Dinaric lynx population serves as a compelling example of genetic rescue. The lessons learnt here will be essential for ensuring the viability of the Dinaric lynx in the future and also provide a useful template for conservation of other populations and species facing similar threats.</p>","PeriodicalId":168,"journal":{"name":"Evolutionary Applications","volume":"18 1","pages":""},"PeriodicalIF":3.5,"publicationDate":"2025-01-10","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11718419/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142968958","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Genomic Introgression Between Critically Endangered and Stable Species of Darwin's Tree Finches on the Galapagos Islands","authors":"Rachael Y. Dudaniec,&nbsp;Sonu Yadav,&nbsp;Julian Catchen,&nbsp;Sonia Kleindorfer","doi":"10.1111/eva.70066","DOIUrl":"10.1111/eva.70066","url":null,"abstract":"<p>Natural hybridisation among rare or endangered species and stable congenerics is increasingly topical for the conservation of species-level diversity under anthropogenic impacts. Evidence for beneficial genes being introgressed into or selected for in hybrids raises concurrent questions about its evolutionary significance. In Darwin's tree finches on the island of Floreana (Galapagos Islands, Ecuador), the Critically Endangered medium tree finch (<i>Camarhynchus pauper</i>) undergoes introgression with the stable small tree finch (<i>Camarhynchus parvulus</i>), and hybrids regularly backcross with <i>C. parvulus.</i> Earlier studies in 2005–2013 documented an increase in the frequency of <i>Camarhynchus</i> hybridisation on Floreana using field-based and microsatellite data. With single nucleotide polymorphism (SNP) data from the same Floreana tree finches sampled in 2005 and 2013 (<i>n</i> = 95), we examine genome-wide divergence across parental and hybrid birds and evidence for selection in hybrids. We found that just 18% of previously assigned hybrid birds based on microsatellites could be assigned to hybrids using SNPs. Over half of the previously assigned hybrids (63%) were reassigned to <i>C. parvulus,</i> though parental species showed concordance with prior assignments. Of 4869 private alleles found in hybrid birds, 348 were at a high frequency (≥ 0.30) that exceeded their parental species of origin 89%–96% of the time. For private alleles detected in both years (<i>N</i> = 536) between 11%–76% of alleles underwent a frequency increase and 13%–61% a frequency decrease between 2005 and 2013, which was sensitive to sampling effort. We identified 28 private alleles that were candidates under selection via local PCA and outlier tests. Alleles were annotated to genes associated with inflammation, immunity, brain function and development. We provide evidence that introgression among a critically endangered and stable species of Darwin's tree finch across years may aid in the retention of adaptive alleles and genetic diversity in birds threatened with extinction.</p>","PeriodicalId":168,"journal":{"name":"Evolutionary Applications","volume":"18 1","pages":""},"PeriodicalIF":3.5,"publicationDate":"2025-01-02","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11695273/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142930186","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Whole Genome Sequencing Reveals Substantial Genetic Structure and Evidence of Local Adaptation in Alaskan Red King Crab","authors":"Carl A. St. John,&nbsp;Laura E. Timm,&nbsp;Kristen M. Gruenthal,&nbsp;Wesley A. Larson","doi":"10.1111/eva.70049","DOIUrl":"10.1111/eva.70049","url":null,"abstract":"<p>High-latitude ocean basins are the most productive on earth, supporting high diversity and biomass of economically and socially important species. A long tradition of responsible fisheries management has sustained these species for generations, but modern threats from climate change, habitat loss, and new fishing technologies threaten their ecosystems and the human communities that depend on them. Among these species, Alaska's most charismatic megafaunal invertebrate, the red king crab, faces all three of these threats and has declined substantially in many parts of its distribution. Managers have identified stock structure and local adaptation as crucial information to help understand biomass declines and how to potentially reverse them, with regulation and possible stock enhancement. We generated low-coverage whole genome sequencing (lcWGS) data on red king crabs from five regions: The Aleutian Islands, eastern Bering Sea, northern Bering Sea, Gulf of Alaska, and Southeast Alaska. We used data from millions of genetic markers generated from lcWGS to build on previous studies of population structure in Alaska that used &lt; 100 markers and to investigate local adaptation. We found each of the regions formed their own distinct genetic clusters, some containing subpopulation structure. Most notably, we found that the Gulf of Alaska and eastern Bering Sea were significantly differentiated, something that had not been previously documented. Inbreeding in each region was low and not a concern for fisheries management. We found genetic patterns consistent with local adaptation on several chromosomes and one particularly strong signal on chromosome 100. At this locus, the Gulf of Alaska harbors distinct genetic variation that could facilitate local adaptation to their environment. Our findings support the current practice of managing red king crab at a regional scale, and they strongly favor sourcing broodstock from the target population if stock enhancement is considered to avoid genetic mismatch.</p>","PeriodicalId":168,"journal":{"name":"Evolutionary Applications","volume":"18 1","pages":""},"PeriodicalIF":3.5,"publicationDate":"2024-12-31","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11686092/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142913392","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Managing Friends and Foes: Sanctioning Mutualists in Mixed-Infection Nodules Trades off With Defense Against Antagonists","authors":"Camille E. Wendlandt,&nbsp;Saumik Basu,&nbsp;Angeliqua P. Montoya,&nbsp;Paige Roberts,&nbsp;Justin D. Stewart,&nbsp;Allison B. Coffin,&nbsp;David W. Crowder,&nbsp;E. Toby Kiers,&nbsp;Stephanie S. Porter","doi":"10.1111/eva.70064","DOIUrl":"10.1111/eva.70064","url":null,"abstract":"<p>Successful plant growth requires plants to minimize harm from antagonists and maximize benefit from mutualists. However, these outcomes may be difficult to achieve simultaneously, since plant defenses activated in response to antagonists can compromise mutualism function, and plant resources allocated to defense may trade off with resources allocated to managing mutualists. Here, we investigate how antagonist attack affects plant ability to manage mutualists with sanctions, in which a plant rewards cooperative mutualists and/or punishes uncooperative mutualists. We studied interactions among wild and domesticated pea plants, pea aphids, an aphid-vectored virus (Pea Enation Mosaic Virus, PEMV), and mutualistic rhizobial bacteria that fix nitrogen in root nodules. Using isogenic rhizobial strains that differ in their ability to fix nitrogen and express contrasting fluorescent proteins, we found that peas demonstrated sanctions in both singly-infected nodules and mixed-infection nodules containing both strains. However, the plant's ability to manage mutualists in mixed-infection nodules traded off with its ability to defend against antagonists: when plants were attacked by aphids, they stopped sanctioning within mixed-infection nodules, and plants that exerted stricter sanctions within nodules during aphid attack accumulated higher levels of the aphid-vectored virus, PEMV. Our findings suggest that plants engaged in defense against antagonists suffer a reduced ability to select for the most beneficial symbionts in mixed-infection tissues. Mixed-infection tissues may be relatively common in this mutualism, and reduced plant sanctions in these tissues could provide a refuge for uncooperative mutualists and compromise the benefit that plants obtain from mutualistic symbionts during antagonist attack. Understanding the conflicting selective pressures plants face in complex biotic environments will be crucial for breeding crop varieties that can maximize benefits from mutualists even when they encounter antagonists.</p>","PeriodicalId":168,"journal":{"name":"Evolutionary Applications","volume":"18 1","pages":""},"PeriodicalIF":3.5,"publicationDate":"2024-12-29","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11683190/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142913391","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Evidence for Significant Skew and Low Heritability of Competitive Male Mating Success in the Yellow Fever Mosquito Aedes aegypti","authors":"Claudia A. S. Wyer,&nbsp;Vladimir Trajanovikj,&nbsp;Brian Hollis,&nbsp;Alongkot Ponlawat,&nbsp;Lauren J. Cator","doi":"10.1111/eva.70061","DOIUrl":"10.1111/eva.70061","url":null,"abstract":"<p>\u0000 <i>Aedes aegpyti</i> mosquitoes are vectors of several viruses of major public health importance, and many new control strategies target mating behaviour. Mating in this species occurs in swarms characterised by male scramble competition and female choice. These mating swarms have a male-biased operational sex ratio, which is expected to generate intense competition among males for mating opportunities. However, it is not known what proportion of swarming males successfully mate with females, how many females each male is able to mate with, and to what extent any variation in the male mating success phenotype can be explained by genetic variation. Here, we describe a novel assay to quantify individual male mating success in the presence of operational sex ratios characteristic of <i>Ae. aegypti</i>. Our results demonstrate that male mating success is skewed. Most males do not mate despite multiple opportunities, and very few males mate with multiple females. We compared measures of male mating success between fathers and sons and between full siblings to estimate the heritability of the trait in the narrow <span></span><math>\u0000 \u0000 <semantics>\u0000 \u0000 <mrow>\u0000 \u0000 <mfenced>\u0000 \u0000 <msup>\u0000 \u0000 <mi>h</mi>\u0000 \u0000 <mn>2</mn>\u0000 </msup>\u0000 </mfenced>\u0000 </mrow>\u0000 \u0000 <annotation>\u0000$$ left({h}^2right) $$\u0000</annotation>\u0000 </semantics>\u0000 </math> and broad <span></span><math>\u0000 \u0000 <semantics>\u0000 \u0000 <mrow>\u0000 \u0000 <mfenced>\u0000 \u0000 <msup>\u0000 \u0000 <mi>H</mi>\u0000 \u0000 <mn>2</mn>\u0000 </msup>\u0000 </mfenced>\u0000 </mrow>\u0000 \u0000 <annotation>\u0000$$ left({H}^2right) $$\u0000</annotation>\u0000 </semantics>\u0000 </math> sense, respectively. We found significant broad sense heritability estimates but little evidence for additive genetic effects, suggesting a role for dominance or epistatic effects and/or larval rearing environment in male mating success. These findings enhance our understanding of sexual selection in this species and have important implications for mass-release programmes that rely on the release of competitive males.</p>","PeriodicalId":168,"journal":{"name":"Evolutionary Applications","volume":"17 12","pages":""},"PeriodicalIF":3.5,"publicationDate":"2024-12-26","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11671345/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142902273","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Toward the Development of the Trojan Female Technique in Pest Insects: Male-Specific Influence of Mitochondrial Haplotype on Reproductive Output in the Seed Beetle Acanthoscelides obtectus","authors":"Lea Vlajnić,&nbsp;Uroš Savković,&nbsp;Jelena Jović,&nbsp;Sanja Budečević,&nbsp;Biljana Stojković,&nbsp;Mirko Đorđević","doi":"10.1111/eva.70065","DOIUrl":"10.1111/eva.70065","url":null,"abstract":"<p>Biocontrol techniques that impair reproductive capacity of insect pests provide opportunities to control the dynamics of their populations while minimizing collateral damage to non-target species and the environment. The Trojan Female Technique, or TFT, is a method of the trans-generational fertility-based population control through the release of females that carry mitochondrial DNA mutations that negatively affect male, but not female, reproductive output. TFT is based on the evolutionary hypothesis that, due to maternal inheritance of mitochondria, mutations which are beneficial or neutral in females but harmful in males can accumulate in the mitochondrial genome without selection acting against them. Although TFT has been theoretically substantiated, empirical work to date has focused only on <i>Drosophila melanogaster</i> populations, while the existence of male-biased mutations and the TFT approach in economically important pest species remain unexplored. Here, we examined the sex-specific effects of three distinct and naturally occurring mitochondrial haplotypes (MG1a, MG1d, and MG3b) on several reproductive and life history traits in the seed beetle <i>Acanthoscelides obtectus</i>. Our results revealed that males harboring the MG3b mitotype exhibited lower early fecundity and fertility, while there were no effects on females or longevity in either sex. Our experiments provide support for the existence of the mitochondrial variant that specifically impairs male reproductive output in pest insects. These results can be harnessed to further develop TFT as a novel form of biocontrol with broad applicability to economic pests and disease vector insects.</p>","PeriodicalId":168,"journal":{"name":"Evolutionary Applications","volume":"17 12","pages":""},"PeriodicalIF":3.5,"publicationDate":"2024-12-26","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11671214/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142890711","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Evolution in Response to Management Increases Invasiveness Among Experimental Populations of Duckweed (Lemna minor)","authors":"Taylor A. Zallek,&nbsp;Martin M. Turcotte","doi":"10.1111/eva.70060","DOIUrl":"10.1111/eva.70060","url":null,"abstract":"<p>Numerous management methods are deployed to try to mitigate the destructive impact of weedy and invasive populations. Yet, such management practices may cause these populations to inadvertently evolve in ways that have consequence on their invasiveness. To test this idea, we conducted a two-step field mesocosm experiment; we evolved genetically diverse populations of the duckweed <i>Lemna minor</i> to targeted removal management and then tested the impact of that evolution in replicated invasions into experimental resident communities. We found that evolution in response to management increased invasiveness compared to populations evolved without management. This evolution in response to management had little effect on the impact of the invader on the resident species. These results illustrate the potential eco-evolutionary consequences of management practices. Mitigating evolution to physical removal, in addition to pesticides, may be important to the long-term success of integrated pest management.</p>","PeriodicalId":168,"journal":{"name":"Evolutionary Applications","volume":"17 12","pages":""},"PeriodicalIF":3.5,"publicationDate":"2024-12-26","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11671222/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142890709","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Levels and Spatial Patterns of Effective Population Sizes in the Southern Damselfly (Coenagrion mercuriale): On the Need to Carefully Interpret Single-Point and Temporal Estimations to Set Conservation Guidelines","authors":"Agathe Lévêque,&nbsp;Anne Duputié,&nbsp;Vincent Vignon,&nbsp;Fabien Duez,&nbsp;Cécile Godé,&nbsp;Clément Mazoyer,&nbsp;Jean-François Arnaud","doi":"10.1111/eva.70062","DOIUrl":"10.1111/eva.70062","url":null,"abstract":"<p>The effective population size (<i>N</i>_e) is a key parameter in conservation and evolutionary biology, reflecting the strength of genetic drift and inbreeding. Although demographic estimations of <i>N</i>_e are logistically and time-consuming, genetic methods have become more widely used due to increasing data availability. Nonetheless, accurately estimating <i>N</i>_e remains challenging, with few studies comparing <i>N</i>_e estimates across molecular markers types and estimators such as single-sample methods based on linkage disequilibrium or sibship analyses versus methods based on temporal variance in allele frequencies. This study aims at bridging this gap by analysing single-sample and temporally spaced populations in the southern damselfly (<i>Coenagrion mercuriale</i>), a bioindicator Odonata species of conservation concern found in southwestern Europe's freshwater stream networks. A total of 77 local populations were sampled from a semi-urbanised area located in eastern France near Strasbourg city, yielding 2842 individuals that were genotyped with microsatellites and 958 of which were also genotyped for 2092 SNPs. Spatial genetic structure was stable over time, suggesting porosity between alternate-year cohorts. When accounting for spatial genetic structure, single-sample and temporal estimations of <i>N</i>_e were consistent for each set of molecular markers. Biologically meaningful results were obtained when the effect of migration was minimising by considering metapopulation <i>N</i>_e estimates based on the level of genetic differentiation and population boundaries. In terms of applied conservation and management, most depicted metapopulations displayed large <i>N</i>_e, indicating no immediate need for conservation measures to mitigate anthropogenic pressures, provided that a continuous suitable freshwater network is maintained. However, urbanisation negatively impacted <i>N</i>_e levels in populations close to Strasbourg city. Because <i>N</i>_e is used to inform conservation decisions, caution is crucial in interpreting <i>N</i>_e estimates, especially in continuously distributed populations undergoing migration. Altogether, our study highlights the challenge of obtaining robust <i>N</i>_e estimates and the necessity of careful interpretation to set relevant conservation guidelines.</p>","PeriodicalId":168,"journal":{"name":"Evolutionary Applications","volume":"17 12","pages":""},"PeriodicalIF":3.5,"publicationDate":"2024-12-24","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11667679/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142884901","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Genomic Evidence for the Purging of Deleterious Genetic Variation in the Endangered North Atlantic Right Whale","authors":"Richard W. Orton,&nbsp;Philip K. Hamilton,&nbsp;Timothy R. Frasier","doi":"10.1111/eva.70055","DOIUrl":"10.1111/eva.70055","url":null,"abstract":"<p>The reduced genetic diversity and frequent inbreeding associated with small population size may underpin the accumulation and expression of deleterious mutations (mutation load) in some declining populations. However, demographic perturbations and inbreeding coupled with purifying selection can also purge declining populations of deleterious mutations, leading to intriguing recoveries. To better understand the links between deleterious genetic variation and population status, we assess patterns of genetic diversity, inbreeding, and mutation load across the genomes of three species of <i>Balaenidae</i> whale with different demographic histories and recoveries following the end of commercial whaling in the 1980s. Unlike bowhead (BH) and Southern right whales (SRW), which show signs of recent recovery, reproductive rates of the endangered North Atlantic right whale (NARW) remain lower than expected. We show that the NARW is currently marked by low genetic diversity, historical inbreeding, and a high mutation load. Still, we reveal evidence that genetic purging has reduced the frequency of highly deleterious alleles in NARW, which could increase chances of future population recovery. We also identify a suite of mutations putatively linked to congenital defects that occur at high frequencies in nulliparous NARW females but are rare in NARW with high reproductive success. These same mutations are nearly absent in BH and SRW in this study, suggesting that the purging of key variants may shape the probability of population recovery. As anthropogenic disturbances continue to reduce the sizes of many populations in nature, resolving the links between population dynamics and mutation load could become increasingly important.</p>","PeriodicalId":168,"journal":{"name":"Evolutionary Applications","volume":"17 12","pages":""},"PeriodicalIF":3.5,"publicationDate":"2024-12-23","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11665784/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142881049","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}