Tomoaki Muranaka, Moeka Matsuura, Kan Yokoyama, Yuuki Gatayama, Satoru Taura, Katsuyuki Ichitani, Eiji Kanda
{"title":"Machine learning assisted analysis of rice flower opening times using a low-cost time-lapse camera.","authors":"Tomoaki Muranaka, Moeka Matsuura, Kan Yokoyama, Yuuki Gatayama, Satoru Taura, Katsuyuki Ichitani, Eiji Kanda","doi":"10.1007/s10265-025-01650-8","DOIUrl":"https://doi.org/10.1007/s10265-025-01650-8","url":null,"abstract":"<p><p>Flower opening time (FOT) is a key trait for successful reproduction and reproductive isolation. In crop science, FOT is critical for stress avoidance and efficient breeding practices. This study developed a system for the automatic detection of rice flower openings and FOT estimation by integrating a low-cost time-lapse camera with machine learning technology. This approach enabled high-resolution monitoring of flowering dynamics in two cultivars: the japonica cultivar Taichung 65 (T65) and the indica cultivar IR24. The system accurately identified regions containing open flowers, and the estimated FOTs varied within a 3-h range, with a root mean square error of approximately 30 min compared to manual detection. A significant difference in estimated FOTs between IR24 and T65 demonstrated the system's potential for genetic screening applications. FOT of both cultivars exhibited a significant negative correlation with daily mean temperature. Notably, a temperature-sensitive period was identified in the morning, suggesting that temperature influences not only flower opening but also preceding physiological processes such as panicle and spikelet development. This study presents a novel approach to investigating FOT dynamics in rice and provides insights into the interaction between environmental factors and internal regulatory mechanisms governing this critical reproductive trait.</p>","PeriodicalId":16813,"journal":{"name":"Journal of Plant Research","volume":" ","pages":""},"PeriodicalIF":2.7,"publicationDate":"2025-06-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144285049","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Isolation and functional identification of Jasmonte resistant 1, a Jasmonic acid isoleucine-conjugating enzyme in Catharanthus roseus.","authors":"Aikun Pan, Haiqiao Gao, Ying Lin, Bingrun Yang, Chunhao Chang, Zhiwen Liu, Yanyan Wang, Zhaoxia Jin, Fang Yu","doi":"10.1007/s10265-025-01646-4","DOIUrl":"https://doi.org/10.1007/s10265-025-01646-4","url":null,"abstract":"<p><p>Jasmonate resistant 1 (JAR1), which encodes a jasmonate-amino synthase, mediates the biosynthesis of jasmonoyl-isoleucine (JA-Ile), the bioactive form of jasmonate involved in JA signal transduction pathway. Although JAR1 has been characterized in several plant species, its regulatory function in mediating JA signaling to modulate the biosynthesis of terpenoid indole alkaloids (TIAs) in Catharanthus roseus, a medicinal and ornamental plant, have not been previously investigated. In this study, we have identified and cloned CrJAR1, a member of the Gretchen Hagen3 (GH3) gene family, from C. roseus and confirmed its enzymatic activity in JA-Ile formation via heterologous expression in E. coli. Functional analyses using transient overexpression and virus-induced gene silencing (VIGS) in C. roseus leaves revealed that CrJAR1 positively regulates the accumulation of catharanthine and vindoline. Moreover, we demonstrated that CrCOI1, the jasmonate receptor, functions synergistically with CrJAR1 in modulating TIA biosynthesis. Co-silencing of CrCOI1 and CrJAR1 resulted in a lower sensitivity to exogenous JA treatment compared to silencing of CrJAR1 alone, indicating distinct yet complementary roles in jasmonate-mediated metabolic regulation. These results advance our understanding the function of CrJAR1 and offer new strategies for engineering specialized metabolite biosynthesis in plants.</p>","PeriodicalId":16813,"journal":{"name":"Journal of Plant Research","volume":" ","pages":""},"PeriodicalIF":2.7,"publicationDate":"2025-06-06","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144234404","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Toshiki Wada, Ayako N Sakamoto, Masaaki Umeda, Naoki Takahashi
{"title":"Correction: SUPPRESOR OF GAMMA RESPONSE 1 promotes early onset of endoreplication upon DNA double-strand breaks by inducing CCS52A1 expression in Arabidopsis roots.","authors":"Toshiki Wada, Ayako N Sakamoto, Masaaki Umeda, Naoki Takahashi","doi":"10.1007/s10265-025-01647-3","DOIUrl":"https://doi.org/10.1007/s10265-025-01647-3","url":null,"abstract":"","PeriodicalId":16813,"journal":{"name":"Journal of Plant Research","volume":" ","pages":""},"PeriodicalIF":2.7,"publicationDate":"2025-06-03","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144216163","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Novel insight into structural and functional features of the receptacle glands of Pseudobombax longiflorum (Malvaceae).","authors":"Yve Canaveze, Elza Guimarães, Silvia Rodrigues Machado","doi":"10.1007/s10265-025-01648-2","DOIUrl":"https://doi.org/10.1007/s10265-025-01648-2","url":null,"abstract":"<p><p>Floral glands, which produce diverse metabolites, have become the focus of increasing interest because of their important roles in plant-animal interactions. The glands in the receptacle of Pseudobombax longiflorum (Malvaceae) are widely accepted as nectaries. Using light, scanning, and transmission electron microscopy, we studied the anatomy, histochemistry, ultrastructure, and secretory dynamics of the receptacle glands in this species. The glands were active in secretion from young flower buds to immature fruits. Trigona spinipes was the most abundant and frequent visitor. The glands were composed of a uniseriate epidermis covered with a thick cuticle and a multilayered parenchyma, exhibiting two subregions with abundant phloem in the innermost region. These glands produced sugars, resins, oils, and phenolic compounds. Glandular cells exhibited large nuclei with nucleoli, polymorphic plastids with lipophilic inclusions, numerous mitochondria, endoplasmic reticulum profiles, cytoplasmic oil bodies, and vacuoles containing phenolic compounds. Plasmodesmata indicate that secretory components are transported from cell to cell via the symplast. There is also evidence for granulocrine and eccrine secretion mechanisms. The accumulated secretions form a bulge in the central region of the gland. The bulged epidermis detached from the parenchyma cells, and the rupture of the epidermal cells released the accumulated hydrophilic components. Residual lipophilic secretions were embedded in the epidermal cell wall and cuticle. The receptacle glands of P. longiflorum are not typical nectaries but mixed glands that produce both hydrophilic and lipophilic secretions during floral development until young fruits.</p>","PeriodicalId":16813,"journal":{"name":"Journal of Plant Research","volume":" ","pages":""},"PeriodicalIF":2.7,"publicationDate":"2025-05-29","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144173929","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Enhancing Festuca chloroplast genome resources.","authors":"Junying Liu, Pei Tian","doi":"10.1007/s10265-025-01649-1","DOIUrl":"https://doi.org/10.1007/s10265-025-01649-1","url":null,"abstract":"<p><p>Festuca L. is a perennial plant of the Poaceae family, known for its good palatability and strong tolerance. The characteristics of the chloroplast genomes of six native Festuca species on the Qinghai-Tibet Plateau were analyzed, including four F. sinensis germplasms from Gansu (1), Qinghai (57), Sichuan (111), and Tibet (10-85); F. rubra subsp. arctica; F. kryloviana; F. nitidula; F. valesiaca subsp. sulcata; and F. elata. The chloroplast genome consists of 127 genes, including 4 ribosomal RNA (rRNA) genes, 38 transfer RNA (tRNA) genes, and 83 protein-coding genes. The number of identified SSRs based on 16 shared optimal ciphers of the four F. sinensis germplasms were 48, 50, 49, and 38, respectively, with the majority being single nucleotide repeat sequences. The phylogenetic tree shows that F. nitidula, F. elata, and one germplasm of F. sinensis from Tibet are grouped into the same clade, while three germplasms of F. sinensis from Gansu, Qinghai, and Sichuan are grouped into another clade. F. valesiaca subsp. sulcata, F. ovina, and F. brevipila are grouped into the same clade. F. rubra subsp. arctica and F. rubra are clustered into one branch. This study clarifies the taxonomy of F. sinensis within the genus, providing a reference for subsequent research on the genetic diversity, genetic structure, and phylogeny of Festuca plants.</p>","PeriodicalId":16813,"journal":{"name":"Journal of Plant Research","volume":" ","pages":""},"PeriodicalIF":2.7,"publicationDate":"2025-05-27","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144159671","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
M Shantal Rodríguez-Flores, Ana Diéguez-Antón, M Carmen Seijo-Coello, Olga Escuredo
{"title":"Flora volatile profiles of plants visited by Vespa velutina: a preliminary assessment in the interaction of plant-insect.","authors":"M Shantal Rodríguez-Flores, Ana Diéguez-Antón, M Carmen Seijo-Coello, Olga Escuredo","doi":"10.1007/s10265-025-01645-5","DOIUrl":"https://doi.org/10.1007/s10265-025-01645-5","url":null,"abstract":"<p><p>Plants function within complex ecological communities, relying on chemical signals to mediate interactions with other organisms. The foraging behaviour of insects, such as the invasive hornet Vespa velutina nigrithorax, introduced into northwestern Spain over a decade ago, may be influenced by floral volatiles. This hornet detects plant secondary metabolites, including semiochemicals, which aid in locating nectar, carbohydrates, prey, mating sites, and other resources. Understanding the volatile organic compounds (VOCs) emitted by plants visited by V. velutina may help to develop targeted control strategies. The aim of this study was to identify and analyse the volatile compounds emitted by 18 plant species frequented by V. velutina nigrithorax in the province of Ourense, northwest Spain. Solid-phase microextraction (SPME) coupled with gas chromatography-mass spectrometry (GC-MS) was used in this study. A total of 110 VOCs were identified, of which 21 compounds were abundant in the samples, with terpenes being the most abundant. Furthermore, a PLS-DA analysis selected 33 volatile compounds with variable importance scores (VIPs) greater than 1, in particular methylanthranilate with a value of 1.81. Eleven of these compounds were found to be abundant in the analysed samples, including (Z)-β-ocimene; 1-octen-3-ol; 3-hexen-1-ol, acetate, (Z)-; 3-octanone; eugenol; linalool; methyl salicylate; o-cymene; α-farnesene; α-terpineol and β-farnesene. The selection of these compounds provides valuable insights into plant-insect interactions, highlighting their diverse roles as plant volatiles in mediating insect behaviour and underlining their potential as targets for environmentally friendly pest management strategies.</p>","PeriodicalId":16813,"journal":{"name":"Journal of Plant Research","volume":" ","pages":""},"PeriodicalIF":2.7,"publicationDate":"2025-05-15","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144078559","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Single-cell views of fate reprogramming in de novo organogenesis.","authors":"Hatsune Morinaka, Yu Chen, Keiko Sugimoto","doi":"10.1007/s10265-025-01644-6","DOIUrl":"https://doi.org/10.1007/s10265-025-01644-6","url":null,"abstract":"<p><p>De novo organogenesis is a key process in plant development and regeneration, enabling plants to adapt and survive under suboptimal conditions. Studying the molecular mechanisms of cellular reprogramming that drives new organ formation has been challenging since only a subset of cells among heterogeneous cell populations change the cell fate. Recent advancements in single-cell technologies, however, have begun to provide unprecedented insights into the cell identities and their developmental trajectories, offering a deeper understanding of cell fate transitions during this process. In this review we highlight how single-cell approaches help uncover the regulatory networks that govern cell fate reprogramming and propose future directions for improving temporal and spatial resolution to further advance this emerging field.</p>","PeriodicalId":16813,"journal":{"name":"Journal of Plant Research","volume":" ","pages":""},"PeriodicalIF":2.7,"publicationDate":"2025-05-14","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144027176","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Gabriel Tadeu Teodoro da Cruz, Gabriela Brito Costa, Nayara Magry Jesus Melo, Javier Guido Puntieri, João Paulo Souza
{"title":"Bud structure, time of budbreak and crown architecture in woody species from Cerrado and seasonal forests of Brazil.","authors":"Gabriel Tadeu Teodoro da Cruz, Gabriela Brito Costa, Nayara Magry Jesus Melo, Javier Guido Puntieri, João Paulo Souza","doi":"10.1007/s10265-025-01642-8","DOIUrl":"https://doi.org/10.1007/s10265-025-01642-8","url":null,"abstract":"<p><p>Different light intensities in cerrado stricto sensu (CSS) and semideciduous seasonal forests (SSF) can result in distinct morphological responses among woody species. This research evaluated the size and bud composition, budbreak time, and crown architecture of woody species in response to precipitation and varying light intensities in these two environments. The study was conducted in CSS (19°57'29″ S and 44°25'29″ W) and an SSF fragment (19°53'84″ S and 44°25'56″ W) in Minas Gerais, Brazil. The research focused on four species: Miconia albicans and Xylopia aromatica, which occur in both environments, as well as Bauhinia cfr. ungulata (CSS) and B. cfr. rufa (SSF). Shoots from the main axis were manually dissected, and budbreak times were recorded. Crown architecture was evaluated based on diagrams of the vegetative above-ground structure, excluding leaves. Light intensities was measured with a luxmeter at the crown's apex, interior, and base. Shoots were larger and had more preformed organs in CSS than in SSF trees. Trichomes were observed on shoots of all CSS and SSF trees. The number of cataphylls varied: B. cfr. ungulata had one, B. cfr. rufa had 1-3, while compound buds of X. aromatica averaged 5.4 in CSS and 3.7 in SSF. Simple buds of X. aromatica and all M. albicans buds lacked cataphylls. Budbreak occurred in September for M. albicans (CSS and SSF), October for B. cfr. ungulata, Juy-October for X. aromatica and August-October for B. cfr. rufa. A positive correlation between budbreak and rainfall was recorded only for B. cfr. ungulata. Despite differences in bud size and composition between environment, these didn't result in distinct crown architectures. The findings highlight that tropical woody species with cataphyll-protected buds are as common as in temperate regions. Further research is needed to explore phylogenetic traits and the ecological role of cataphylls in tropical species.</p>","PeriodicalId":16813,"journal":{"name":"Journal of Plant Research","volume":" ","pages":""},"PeriodicalIF":2.7,"publicationDate":"2025-05-06","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144020971","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"The WSD-type wax ester synthase is widely conserved in streptophytes and crucial for floral organ formation under high humidity in land plants.","authors":"Takashi Nobusawa, Yuko Sasaki-Sekimoto, Hiroyuki Ohta, Makoto Kusaba","doi":"10.1007/s10265-025-01628-6","DOIUrl":"10.1007/s10265-025-01628-6","url":null,"abstract":"<p><p>Cuticular waxes are a complex mixture of long-chain aliphatic compounds, including alkanes, aldehydes, alcohols, ketones, and esters, that cover the outer surface of most terrestrial plants. While cuticular waxes play a pivotal role in plant adaptation to various environmental stresses, the specific roles of individual molecular species, particularly wax esters (WEs), remain poorly understood. In this study, we investigate the evolution and function of wax ester biosynthesis in land plants, focusing on the WSD (wax synthase/DGAT) enzyme family. We demonstrate that the ancestral origin of WSD enzymes traces back to streptophyte algae, specifically Klebsormidium nitens (KnWSD1). Our findings provide evidence that KnWSD1 functions as a monofunctional WSD catalyzing WE formation without producing triacylglycerols (TAGs). By generating Arabidopsis mutants with multiple WSD gene knockouts, we uncover a crucial role for WEs in supporting floral organ development under high humidity. Our results reveal that WEs are essential for floral organ development and provide new insights into their evolutionary significance in plant adaptation to terrestrial environments.</p>","PeriodicalId":16813,"journal":{"name":"Journal of Plant Research","volume":" ","pages":"497-509"},"PeriodicalIF":2.7,"publicationDate":"2025-05-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12062176/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143763504","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}