{"title":"Experimental Evidence for Conservation of the Ubiquitin-Like Autophagy-Related ATG12 Conjugation System in Trichomonas vaginalis","authors":"Xiaoxia X. Lin, Yumiko Saito-Nakano, Euki Yazaki, Ryo Harada, Dingming V. Zhao, Kenji Hikosaka, Hirokazu Sakamoto","doi":"10.1111/jeu.70028","DOIUrl":"https://doi.org/10.1111/jeu.70028","url":null,"abstract":"<div>\u0000 \u0000 <p>Autophagy, an intracellular degradation system, is mediated by autophagy-related (ATG) factors, including the ubiquitin-like ATG12 conjugation system. While the ATG12 system was previously thought to be lost in <i>Trichomonas vaginalis</i>, we provide experimental evidence for its conservation. Using AlphaFold-based structural analysis and functional assays in heterologous cells, we demonstrated that candidates of the ATG12 system in <i>T. vaginalis</i> mediate ubiquitin-like conjugation reactions. This study fills a knowledge gap in the autophagy molecular mechanisms in protists and suggests a practical approach for analyzing ATG proteins in evolutionary divergent protists that are difficult to culture or genetically manipulate.</p>\u0000 </div>","PeriodicalId":15672,"journal":{"name":"Journal of Eukaryotic Microbiology","volume":"72 4","pages":""},"PeriodicalIF":2.1,"publicationDate":"2025-07-15","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144624381","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Report of the 44th Annual Meeting of the Society of Eukaryotic Microbiology (EuMik)","authors":"Edward A. D. Mitchell","doi":"10.1111/jeu.70024","DOIUrl":"https://doi.org/10.1111/jeu.70024","url":null,"abstract":"","PeriodicalId":15672,"journal":{"name":"Journal of Eukaryotic Microbiology","volume":"72 4","pages":""},"PeriodicalIF":2.1,"publicationDate":"2025-07-09","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144582382","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Maximilian H. Ganser, Birgit Weißenbacher, Sabine Agatha
{"title":"How Single Cells Form Shells: Maturation and Secretion of Lorica-Forming Material in the Tintinnid Schmidingerella (Alveolata, Ciliophora)","authors":"Maximilian H. Ganser, Birgit Weißenbacher, Sabine Agatha","doi":"10.1111/jeu.70025","DOIUrl":"https://doi.org/10.1111/jeu.70025","url":null,"abstract":"<p>Tintinnid ciliates are distinguished by their loricae (shells), the key synapomorphy of these mainly marine planktonic protists. They can divide daily, with a considerable portion of biomass stored in the loricae. During each division, lorica-forming material (LFM) is produced and afterwards used by the proter (anterior division product) to construct a new lorica, while the opisthe (posterior division product) retains the parental one. Many aspects of lorica formation remain unclear, and no study describes the entire process from material maturation via secretion to assembly. Here, we present the first thorough investigation at cellular and sub-cellular levels, employing light microscopy on dividers and postdividers, as well as transmission electron microscopy on primarily cryofixed specimens from a <i>Schmidingerella</i> culture. Our study reconstructs LFM maturation, identifying two main developmental stages: the morula-shaped precursor granules and the mature granules. The latter cluster in the proter's ventral portion with a peripheral longitudinal strip of small granules embedded in large ones. Ultrastructurally and chemically, the mature granules of both size classes are identical. Through detailed live observations, we followed and documented, for the first time, the process of cell division, the behavior of the proter, the release of LFM granules, and features of lorica formation.</p>","PeriodicalId":15672,"journal":{"name":"Journal of Eukaryotic Microbiology","volume":"72 4","pages":""},"PeriodicalIF":2.1,"publicationDate":"2025-07-08","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1111/jeu.70025","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144573956","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Dora Čertnerová, Pavel Škaloud, Iva Jadrná, Martin Čertner
{"title":"Large Genomes Are Associated With Greater Cell Size and Ecological Shift Towards More Nitrogen-Rich and Higher-Latitude Environments in Microalgae of the Genus Synura","authors":"Dora Čertnerová, Pavel Škaloud, Iva Jadrná, Martin Čertner","doi":"10.1111/jeu.70026","DOIUrl":"https://doi.org/10.1111/jeu.70026","url":null,"abstract":"<p>The nuclear genome is essential for encoding most of the genes required for cellular processes, but its size alone can alter the characteristics of cells and organisms. Yet, genome size variation and its ecological and evolutionary impacts, particularly in microorganisms, are not well understood. We used flow cytometry to estimate genome size and GC content in 53 evolutionary lineages of the microalgal genus <i>Synura</i> (Chrysophyceae, Stramenopiles). Genome size evolution was reconstructed in a phylogenetic framework using molecular markers. A set of genomic, morphological, and ecogeographic variables characterizing <i>Synura</i> lineages was evaluated and tested as predictors of genome size variation in phylogeny-corrected statistical models. Both genome size and GC content varied widely in <i>Synura</i>, ranging from 0.19 to 3.70 pg of DNA and 34.0% to 49.3%, respectively. Genome size variation was mainly associated with cell size, less with silica scale size, and not with scale ultrastructure. Higher soil nitrogen, higher latitudes, and lower temperatures correlated with larger genomes. Genome size evolution in <i>Synura</i> shows potential dynamism, with increases confined to short terminal branches, indicating lower macroevolutionary stability. Lineages with larger genomes exhibited a narrower range of suitable ecological conditions, possibly due to selection acting deleteriously against larger genomes (and cells).</p>","PeriodicalId":15672,"journal":{"name":"Journal of Eukaryotic Microbiology","volume":"72 4","pages":""},"PeriodicalIF":2.1,"publicationDate":"2025-07-02","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1111/jeu.70026","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144537092","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Morphology, Systematics and Life Cycle of Ozanamia fimbriatus (Haptista: Centroplasthelida), With Notes on Evolution of Organic Skeleton in Centrohelids","authors":"Daria Drachko, Vasily V. Zlatogursky","doi":"10.1111/jeu.70022","DOIUrl":"https://doi.org/10.1111/jeu.70022","url":null,"abstract":"<div>\u0000 \u0000 <p>The majority of centrohelids bear coverings that consist either of siliceous scales or organic spicules. Strains carrying organic spicules appear in all major clades of scale-bearing centrohelids. Sometimes they represent alternative life cycle stages of scale-bearing species, whereas in other cases such strains do not alternate their morphology. Studying this “siliceous-organic” polymorphism is instrumental to understanding centrohelid diversity and evolution. The genus <i>Chlamydaster</i> has unique organic coverings that are formed with a mucous sheath and seemingly lack skeletal elements. Two centrohelid strains matching the description of <i>Chlamydaster fimbriatus</i> were isolated in clonal cultures and studied with the use of light and electron microscopy. The mucous sheath was shown to be covered with short, crisscrossed spicules. One of the strains formed cysts with siliceous spine scales, whereas the other did not encyst. SSU rDNA-based molecular phylogenetics placed the strains into the scale-bearing genus <i>Ozanamia</i>, distant from the type species of <i>Chlamydaster</i>. The new combination <i>Ozanamia fimbriatus</i> (Penard 1904) Drachko was established. The implications of <i>Chlamydaster</i> non-monophyly and the role of the “siliceous-organic” polymorphism in encystment were discussed.</p>\u0000 </div>","PeriodicalId":15672,"journal":{"name":"Journal of Eukaryotic Microbiology","volume":"72 4","pages":""},"PeriodicalIF":2.1,"publicationDate":"2025-06-29","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144514572","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"EXPRESSION OF CONCERN: Cystathionine γ-lyase, an Enzyme Related to the Reverse Transsulfuration Pathway, is Functional in Leishmania spp.","authors":"","doi":"10.1111/jeu.70021","DOIUrl":"https://doi.org/10.1111/jeu.70021","url":null,"abstract":"<p>\u0000 <b>EXPRESSION OF CONCERN</b>: <span>L. Giordana</span>, <span>B. S. Mantilla</span>, <span>M. Santana</span>, <span>A. M. Silber</span>, and <span>C. Nowicki</span>, “ <span>Cystathionine γ-lyase, an Enzyme Related to the Reverse Transsulfuration Pathway, is Functional in Leishmania spp</span>.,” <i>Journal of Eukaryotic Microbiology</i> <span>61</span>, no. <span>2</span> (<span>2014</span>): <span>204</span>–<span>213</span>, https://doi.org/10.1111/jeu.12100.\u0000 </p><p>This Expression of Concern is for the above article, published online on 11 January 2014 in Wiley Online Library (wileyonlinelibrary.com), and has been issued by agreement between the journal Editor-in-Chief, Joel B. Dacks; The International Society of Protistologists; and Wiley Periodicals LLC. The Expression of Concern has been agreed due to concerns raised by third parties. A duplication of the Western Blot bands depicting “CS_P” and “CGL_P” has been identified in Figure 5B. The authors have acknowledged an unintentional duplication of one of the western blot images corresponding to CS_P or CGL_P during figure preparation, rather than duplication of the individual band. The authors declare that none of the western blots in the figure were altered in any form. However, due to the time elapsed since publication, the original data could not be recovered to rectify the mistake. As the conclusions are not affected by the issue detected, the journal has decided to issue an Expression of Concern to inform and alert the readers.</p>","PeriodicalId":15672,"journal":{"name":"Journal of Eukaryotic Microbiology","volume":"72 4","pages":""},"PeriodicalIF":2.1,"publicationDate":"2025-06-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1111/jeu.70021","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144503030","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Solenn Mordret, Jenna MacKinnon, Susana A. Breglia, Claudio H. Slamovits, Caroline Chénard
{"title":"An Update on the Morphology and Phylogeny of the Nanoplanktonic Dinoflagellate Prorocentrum nux","authors":"Solenn Mordret, Jenna MacKinnon, Susana A. Breglia, Claudio H. Slamovits, Caroline Chénard","doi":"10.1111/jeu.70019","DOIUrl":"https://doi.org/10.1111/jeu.70019","url":null,"abstract":"<p>The Prorocentrales are a diverse group of dinophytes found in a wide range of marine environments. However, species delimitation in the genus <i>Prorocentrum</i> still remains a challenge, especially for nanoscale species where morphological and molecular information is often incomplete. <i>Prorocentrum nux</i> is an example where information is sparse and efforts are needed. In this study, we present a detailed description of the morphological features and molecular information for a Northwest Atlantic strain (AGSB-0131). Using Scanning Electron Microscopy, additional morphological features from the original description were highlighted, including the periflagellar area configuration (nine vs. seven platelets) and pattern dissimilarities for the large and marginal pores. In addition to the revised description, the 18S rRNA gene, partial 28S rRNA gene, mitochondrial c<i>ox1</i> and <i>cob</i> genes were generated from strain AGSB-0131, revealing some ambiguity in the existing data available for <i>P. nux</i>. An important genetic divergence between the only 18S rRNA sequence currently available for <i>P. nux</i> (strain RCC303) and AGSB-0131 was highlighted, suggesting the importance of using the same strain to retrieve morphological and molecular information for nanodinoflagellates. Adding genetic markers for the correct identification of <i>P. nux</i> will enhance the ability to access its prevalence in the marine environment.</p>","PeriodicalId":15672,"journal":{"name":"Journal of Eukaryotic Microbiology","volume":"72 4","pages":""},"PeriodicalIF":2.1,"publicationDate":"2025-06-26","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1111/jeu.70019","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144482120","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Nicole A. M. Herbert, Árni Kristmundsson, Nuria Vazquez, Kelsey Hoag, Mark A. Freeman
{"title":"Nematopsis Schneider, 1892 in Nerite Gastropods From Saint Kitts, With a Phylogenetic Study of the Genus, and Placement Within the Phylum Apicomplexa Levine, 1970","authors":"Nicole A. M. Herbert, Árni Kristmundsson, Nuria Vazquez, Kelsey Hoag, Mark A. Freeman","doi":"10.1111/jeu.70023","DOIUrl":"https://doi.org/10.1111/jeu.70023","url":null,"abstract":"<p>The Apicomplexa are obligate unicellular parasites found in terrestrial and aquatic environments. <i>Nematopsis</i> are found infecting marine invertebrates in a life cycle involving mollusks and crustaceans. In the present study, mantle and muscle tissues from nerite gastropods were microscopically examined for <i>Nematopsis</i> using wet mounts and histology. Oocysts contained one single sporozoite surrounded by an ellipsoidal wall and were surrounded by a parasitophorous vacuole within a host phagocyte. Length and width of fresh oocysts were measured and compared between host species. DNA was extracted from infected tissue, and regions of the rRNA gene were amplified using novel primers. <i>Nematopsis</i>-infected tissues from scallops from Argentina and Scotland were used as controls. The sizes of oocysts observed in nerite hosts from Saint Kitts were not significantly different. DNA sequences of <i>Nematopsis</i> isolated from nerite hosts in this study were identical and phylogenetically related to sequences obtained from scallops. Bayesian and maximum likelihood phylogenetic analyses robustly place the <i>Nematopsis</i> DNA sequences from this study with <i>Nematopsis</i> from scallops in Florida and members of the family Porosporidae. We conclude that marine <i>Nematopsis</i> will group within this clade or within the Porosporidae. We have provided specific oligonucleotide primers to assist with the molecular study of the Porosporidae.</p>","PeriodicalId":15672,"journal":{"name":"Journal of Eukaryotic Microbiology","volume":"72 4","pages":""},"PeriodicalIF":2.1,"publicationDate":"2025-06-24","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1111/jeu.70023","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144472931","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Fernando Gómez, Huan Zhang, Luis Felipe Artigas, Senjie Lin
{"title":"The Dinoflagellate Gonyaulax fragilis Is ‘the Wrong Man’ of the Dirty Seas, and Reinstatement of Steiniella Within the Protoceratiaceae (Dinophyceae)","authors":"Fernando Gómez, Huan Zhang, Luis Felipe Artigas, Senjie Lin","doi":"10.1111/jeu.70020","DOIUrl":"https://doi.org/10.1111/jeu.70020","url":null,"abstract":"<div>\u0000 \u0000 <p>The production of mucilage aggregates is commonly associated with diatoms, but the harmful events known as ‘<i>mare sporco</i>’ or dirty seas have been attributed to the dinoflagellate <i>Gonyaulax fragilis</i> or <i>G. hyalina</i>. The synonymy of these taxa has been debated for decades. We report observations of <i>G. fragilis</i> from the Mediterranean Sea, and Atlantic and Indian Oceans, along with its SSU- and LSU rRNA gene and ITS region sequences from cells of the open Indian Ocean. The rDNA/ITS sequences are distantly related to those identified as <i>G. fragilis</i> from the Mediterranean Sea and New Zealand involved in dirty sea events. Unequivocally, <i>G. fragilis</i> is not the culprit of the mucilage events. <i>Gonyaulax fragilis</i> clusters with full support alongside with <i>Schuettiella mitra</i>, forming a sister group to the benthic genus <i>Carinadinium</i>, as an earlier branching lineage with the Protoceratiaceae (<i>Ceratocorys</i>, <i>Pentaplacodinium</i>, <i>Protoceratium</i>). A single anterior intercalary plate (1a) characterizes these genera, while the Gonyaulacaceae possess 2a. The genus <i>Steiniella</i>, first described for <i>G. fragilis</i> and <i>S. mitra</i>, has historically been synonymized with <i>Gonyaulax</i>. We reinstate <i>Steiniella</i> for these two species, and <i>S. inflata</i>, placing <i>Schuettiella</i> as a junior synonym. The species responsible of the mucilage events is attributed to <i>G. hyalina</i>.</p>\u0000 </div>","PeriodicalId":15672,"journal":{"name":"Journal of Eukaryotic Microbiology","volume":"72 4","pages":""},"PeriodicalIF":2.1,"publicationDate":"2025-06-11","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144264346","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Albert Reñé, Aika Yamaguchi, Takeo Horiguchi, António José Calado, Mona Hoppenrath
{"title":"On the Identity and Taxonomic Circumscription of the Pfiesteriacean Genera Aduncodinium and Speroidium (Dinophyceae)","authors":"Albert Reñé, Aika Yamaguchi, Takeo Horiguchi, António José Calado, Mona Hoppenrath","doi":"10.1111/jeu.70015","DOIUrl":"https://doi.org/10.1111/jeu.70015","url":null,"abstract":"<p>With its former circumscription, the genus <i>Katodinium</i> included purportedly naked species with a much larger epi- than hypocone, several of which were shown to be distantly related to the type species <i>K. nieuportense</i>. Most of these species have recently been transferred to other genera, several of them newly established. Among these new genera, <i>Aduncodinium</i> was proposed to encompass <i>Katodinium glandula</i> (=<i>Gymnodinium glandula</i>), and <i>Speroidium</i> was erected to encompass <i>Katodinium fungiforme</i> (=<i>Gymnodinium fungiforme</i>). However, the genus <i>Aduncodinium</i> was invalidly published and several morphological aspects described need to be re-evaluated. On the other hand, the inclusion in <i>K. fungiforme</i> of morphological and molecular characters observed in the strain known as VDH034S “Bullet,” a pfiesteriacean, needs re-evaluation because the latter shows a higher resemblance to <i>Aduncodinium</i> species than to <i>K. fungiforme</i>. The present contribution aimed to clarify the identity of the taxa involved on the basis of newly collected morphological and molecular information, and thereby avoid the nomenclatural and taxonomical uncertainties raised by previously published concepts of the genera <i>Aduncodinium</i> and <i>Speroidium</i>.</p>","PeriodicalId":15672,"journal":{"name":"Journal of Eukaryotic Microbiology","volume":"72 4","pages":""},"PeriodicalIF":2.1,"publicationDate":"2025-06-07","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1111/jeu.70015","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144232360","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}