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Investigating the Causal Relationship and Shared Genetic Basis Between Major Depression Disorder and Eight Types of Gastrointestinal Diseases. 重性抑郁症与8种胃肠道疾病的因果关系及共同遗传基础研究。
IF 2.1 4区 生物学
Genetics research Pub Date : 2025-12-14 eCollection Date: 2025-01-01 DOI: 10.1155/genr/6931243
Fu Sun, Haochang Li, Bin Gong, Shirong Hui, Ran He, Meijie Yu, Yihao Li, Sheng Yang, Peng Huang
{"title":"Investigating the Causal Relationship and Shared Genetic Basis Between Major Depression Disorder and Eight Types of Gastrointestinal Diseases.","authors":"Fu Sun, Haochang Li, Bin Gong, Shirong Hui, Ran He, Meijie Yu, Yihao Li, Sheng Yang, Peng Huang","doi":"10.1155/genr/6931243","DOIUrl":"10.1155/genr/6931243","url":null,"abstract":"<p><strong>Background: </strong>Previous studies on the causal relationship or shared genetic basis between major depression disorder (MDD) and gastrointestinal (GI) diseases covered either a limited range and not comprehensive enough.</p><p><strong>Methods: </strong>We used linkage disequilibrium score regression (LDSC) to estimate the heritability for nine traits and the genetic correlation (<i>r</i> <sub><i>g</i></sub> ) between MDD and eight GI diseases, respectively. We further conducted a two-sample Mendelian randomization (MR) analysis to identify the causal relationship between MDD and eight GI diseases. Finally, based on the result of MR, we performed stratified LDSC (S-LDSC) to estimate the partitioned heritability and significantly enriched tissues, transcriptome-wide association study (TWAS) to define shared genes, and colocalization analysis to define the pleiotropic single-nucleotide polymorphisms (SNPs) and genes.</p><p><strong>Results: </strong>For the heritability, heritability of all nine traits was significant. For genetic correlation, six GI diseases showed significant correlations with MDD. For the result of MR, we revealed the causal relationship between MDD and acute appendicitis (OR = 1.09), irritable bowel syndrome (IBS) (OR = 1.14), and ulcer of esophagus (OR = 1.24). Additionally, we found no significant overlapping tissues after S-LDSC. Finally, we defined three shared genes: <i>PRSS16, ZNF602P,</i> and <i>ZNF204P</i> by TWAS and nine pleiotropic genes <i>C4A</i>, <i>FLOT1</i>, <i>LINC00243</i>, <i>MICB</i>, and <i>PRSS16</i> by colocalization analysis between MDD and acute appendicitis.</p><p><strong>Conclusions: </strong>Our findings provided the evidence of genetic association, causal relationship, and shared pleiotropic genes between MDD and GI diseases especially acute appendicitis, offering new insights into our understanding of their shared genetic basis.</p>","PeriodicalId":12778,"journal":{"name":"Genetics research","volume":"2025 ","pages":"6931243"},"PeriodicalIF":2.1,"publicationDate":"2025-12-14","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12721742/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145819132","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Comprehensive Genetic Testing for Clinical Decision-Making in a Patient With Congenital Hyperinsulinism. 先天性高胰岛素血症患者临床决策的综合基因检测。
IF 2.1 4区 生物学
Genetics research Pub Date : 2025-12-12 eCollection Date: 2025-01-01 DOI: 10.1155/genr/7281653
Matthias Begemann, Johannes Alexander Tobias Boy, Florian Kraft, Hendrik Vossschulte, Winfried Barthlen, Sebastian Kummer, Thorsten Orlikowsky, Adrin Torosoglu, Thomas Eggermann, Ingo Kurth, Miriam Elbracht, Angeliki Pappa
{"title":"Comprehensive Genetic Testing for Clinical Decision-Making in a Patient With Congenital Hyperinsulinism.","authors":"Matthias Begemann, Johannes Alexander Tobias Boy, Florian Kraft, Hendrik Vossschulte, Winfried Barthlen, Sebastian Kummer, Thorsten Orlikowsky, Adrin Torosoglu, Thomas Eggermann, Ingo Kurth, Miriam Elbracht, Angeliki Pappa","doi":"10.1155/genr/7281653","DOIUrl":"10.1155/genr/7281653","url":null,"abstract":"<p><p>This case study examines a preterm newborn with autosomal recessive <i>ABCC8</i> gene-related diffuse congenital hyperinsulinism (CHI). The interdisciplinary management of the patient, including advanced genetic testing and long-read sequencing, finally led to the molecular diagnosis. These findings were relevant for the immediate decision on further treatment options highlighting the importance of differentiating between focal and diffuse CHI forms, and for providing the family with counseling on the recurrence risks and prenatal diagnostic options. In summary, this study illustrates the clinical and genetic intricacies of CHI, emphasizing the significance of comprehensive genetic analysis in diagnostics and tailored treatment. The case advocates for the integration of state-of-the-art genetic diagnostic technologies in combination with clinical interdisciplinary management to improve patient outcomes.</p>","PeriodicalId":12778,"journal":{"name":"Genetics research","volume":"2025 ","pages":"7281653"},"PeriodicalIF":2.1,"publicationDate":"2025-12-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12721746/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145819054","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
A Cuproptosis-Related lncRNA Signature Predicts Prognosis and Shapes the Immune Landscape in Primary Lower-Grade Glioma. cuprotysis相关的lncRNA特征预测原发性低级别胶质瘤的预后和形成免疫景观。
IF 2.1 4区 生物学
Genetics research Pub Date : 2025-12-08 eCollection Date: 2025-01-01 DOI: 10.1155/genr/3061843
Mengyang Wang, Jianmei Yang, Lei Shen, Jingyi Yang, Ming Luo, Faliang Duan
{"title":"A Cuproptosis-Related lncRNA Signature Predicts Prognosis and Shapes the Immune Landscape in Primary Lower-Grade Glioma.","authors":"Mengyang Wang, Jianmei Yang, Lei Shen, Jingyi Yang, Ming Luo, Faliang Duan","doi":"10.1155/genr/3061843","DOIUrl":"10.1155/genr/3061843","url":null,"abstract":"<p><p>Glioma represents the most prevalent intracranial neoplasms. Lower-grade gliomas (LGGs) are an important subtype of glioma, but the risk stratification of LGG has not been fully elucidated. As a recently recognized form of programmed cell death, cuproptosis is intimately tied to mitochondrial metabolism. Moreover, investigations have revealed that cuproptosis has been implicated in tumor initiation and progression. Long noncoding RNAs (lncRNAs) are engaged in diverse biological processes and connected with the malignant phenotype of gliomas. However, the significance of cuproptosis-related lncRNAs (CRLs) in LGG development remains not fully elucidated. In this work, 963 CRLs were identified using correlation analysis, and a prognostic signature was constructed based on LASSO and multivariate Cox regression analyses. This signature comprised four CRLs: <i>AC002456.1</i>, tumor protein p63 regulated 1-antisense RNA 1 (<i>TPRG1-AS1</i>), <i>AC098851.1</i>, and LYR motif containing 4-antisense RNA 1 (<i>LYRM4-AS1</i>). According to the CRL-based signature, LGG patients were classified into distinct risk groups. To investigate the involvement of biological processes in each LGG sample, we performed gene set variation analysis (GSVA) and gene set enrichment analysis (GSEA) comparing the different risk stratifications. Subsequently, the Estimation of STromal and Immune cells in MAlignant Tumor tissues using Expression (ESTIMATE) data and the tumor immune dysfunction and exclusion (TIDE) were utilized to access the tumor immune landscape of LGG samples. The results demonstrated that the immune landscapes of different risk stratifications differed significantly. Furthermore, we explored the association between the CRL risk signature and immunotherapy effectiveness using the IMvigor210 dataset. Several prospective drugs targeting samples with high scores were predicted, namely, MG-132, PLX-4720, AZD6482, and BMS-536924. We verified the antiglioma effect of MG-132 in vitro. Moreover, experiments conducted in vitro demonstrated that knockdown of the expression of the CRLs <i>TPRG1-AS1</i> and <i>LYRM4-AS1</i> might impair the migration and proliferation capacity of glioma cells. Taken together, these results indicate that CRLs are linked to prognosis and immune characteristics in LGG and give innovative therapeutic methods for individuals with LGG across different risk stratifications.</p>","PeriodicalId":12778,"journal":{"name":"Genetics research","volume":"2025 ","pages":"3061843"},"PeriodicalIF":2.1,"publicationDate":"2025-12-08","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12721737/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145819038","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Clinical and Genetic Profiles of 11 Chinese Patients With Angelman Syndrome. 11例中国天使人综合征的临床与遗传分析。
IF 2.1 4区 生物学
Genetics research Pub Date : 2025-12-05 eCollection Date: 2025-01-01 DOI: 10.1155/genr/5593007
Song Qu, Pu Sun, Limeng Dai, Cui Song, Yanyan Wang
{"title":"Clinical and Genetic Profiles of 11 Chinese Patients With Angelman Syndrome.","authors":"Song Qu, Pu Sun, Limeng Dai, Cui Song, Yanyan Wang","doi":"10.1155/genr/5593007","DOIUrl":"10.1155/genr/5593007","url":null,"abstract":"<p><p>Angelman syndrome (AS) is a severe neurodevelopmental disorder resulting from different molecular mechanisms. Investigating the correlation between genotypes and phenotypes is crucial to facilitate accurate diagnosis and effective prevention strategies for this disorder. However, determining the genotypes of patients to analyze genotype‒phenotype correlations is challenging when parental genetic information is lacking. Therefore, we proposed a genotyping strategy for use with 11 unrelated Chinese patients with AS who were recruited for this study. The strategy involved a combination of methylation-specific polymerase chain reaction (MS-PCR), exome sequencing (ES), Sanger sequencing, and MS multiplexed ligation probe amplification (MS-MLPA). The results revealed that the number of molecular deletions involving the critical 15q11. 2-q13 region (54.5%) was lower than that reported in other studies of Chinese patients. In addition, the prevalence of patients with imprinting defects (IDs) (27.3%) and variants (18.2%) was greater, whereas the proportion of patients with uniparental disomy (UPDs) was lower. We also summarized the characteristics of patients with different genotypes and analyzed the correlations between genotypes and phenotypes. Compared with the consensus for diagnostic criteria, our results showed that several features were less common, including the combination of frequent laughing/smiling, tremulous limb movements, ataxia of gait, and microcephaly. Conversely, the incidence of both epilepsy and abnormal electroencephalograms (EEGs) was greater. Notably, a novel mutation in the <i>UBE3A</i> gene that had not been previously reported was identified in a family.</p>","PeriodicalId":12778,"journal":{"name":"Genetics research","volume":"2025 ","pages":"5593007"},"PeriodicalIF":2.1,"publicationDate":"2025-12-05","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12721727/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145819083","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Exploring Genetic Markers for Cold-Heat Patterns: Integrating Traditional Medicine With Modern Genomic Research. 探索冷热模式的遗传标记:传统医学与现代基因组研究的结合。
IF 2.1 4区 生物学
Genetics research Pub Date : 2025-11-21 eCollection Date: 2025-01-01 DOI: 10.1155/genr/4503515
Seogyun Jeong, Sanghun Lee
{"title":"Exploring Genetic Markers for Cold-Heat Patterns: Integrating Traditional Medicine With Modern Genomic Research.","authors":"Seogyun Jeong, Sanghun Lee","doi":"10.1155/genr/4503515","DOIUrl":"10.1155/genr/4503515","url":null,"abstract":"<p><strong>Background: </strong>Temperature sensitivity has gained considerable attention in the era of precision medicine. This trait has long been used to identify cold-heat patterns (C-HPs), a diagnostic framework in Traditional Korean Medicine that categorizes individuals based on their thermal responses. C-HP helps understand an individual's inherent physical characteristics, which have been shown to be highly heritable and thus shaped by genetic factors. However, genetic markers that are significantly associated with this trait remain scarce. To address this gap, we aimed to identify candidate single-nucleotide polymorphisms (SNPs) based on previous genomewide association studies (GWASs) of related traits.</p><p><strong>Methods: </strong>Given the limited research directly addressing C-HP, we incorporated genetic studies related to traits such as \"Cold\" or \"Heat,\" as well as thyroid hormone, which plays a key role in thermogenesis through the activation of various metabolic pathways. After selecting the SNPs reported in previous GWAS from the GWAS Catalog (EMBL-EBI), we validated these findings using 90 Korean patients reporting C-HP, with statistical significance assessed through residual permutations. Gene set enrichment analysis (GSEA) was performed using the GO Biological Process 2023 dataset to identify the pathways associated with C-HP. Furthermore, we compared our findings with control traits in order to confirm that the observed associations were specific to C-HP-related traits rather than random correlations. Principal component analysis (PCA) was conducted on candidate SNPs from the 1000 Genomes reference dataset to illustrate the ethnic variation for C-HP across five populations.</p><p><strong>Results: </strong>Of 63 GWAS, we selected 548 SNPs for validation. Ultimately, 20 candidate SNPs associated with heat patterns and 19 candidate SNPs associated with cold patterns were identified. Of the heat-pattern SNPs, 18 were linked to thyroid hormone traits, with key SNPs including rs12409301 (<i>CAPZB</i>) and rs12855 (<i>CDKN2C</i>). For the cold-pattern trait, 16 SNPs were associated with thyroid hormones such as rs622474 (<i>PDE4B</i>) and rs11204752 (<i>GOLPH3L</i>). GSEA confirmed notable enrichment in vascular processes for the heat pattern and mitochondrial organization for the cold pattern. The most significant pathway was vascular smooth muscle cell development (<i>p</i> value = 1.28 × 10<sup>-5</sup>) in the heat pattern. The clear ethnic differences in C-HP were observed in the PCA of 1000 Genomes populations where East Asian and African populations formed distinct, well-separated clusters.</p><p><strong>Conclusion: </strong>Our study suggested a total of 39 candidate SNPs as genetic markers for C-HP that are plausible in the context of temperature sensitivity. We hope that our findings will provide a valuable basis for further biological research and potential clinical applications of C-HP.</p>","PeriodicalId":12778,"journal":{"name":"Genetics research","volume":"2025 ","pages":"4503515"},"PeriodicalIF":2.1,"publicationDate":"2025-11-21","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12662677/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145648340","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Elucidating the Role of THPO and Related Molecular Markers in Lymph Node Metastasis and Prognosis of Gastric Cancer: Insights From TCGA Data Analysis. THPO及相关分子标志物在胃癌淋巴结转移及预后中的作用:来自TCGA数据分析的见解
IF 2.1 4区 生物学
Genetics research Pub Date : 2025-09-26 eCollection Date: 2025-01-01 DOI: 10.1155/genr/1438367
Hong Zhou, Hongbin Liu, Shuyan Liu, Jinfeng Qian
{"title":"Elucidating the Role of THPO and Related Molecular Markers in Lymph Node Metastasis and Prognosis of Gastric Cancer: Insights From TCGA Data Analysis.","authors":"Hong Zhou, Hongbin Liu, Shuyan Liu, Jinfeng Qian","doi":"10.1155/genr/1438367","DOIUrl":"10.1155/genr/1438367","url":null,"abstract":"<p><p><b>Background:</b> Gastric cancer poses a substantial public health burden, with rising mortality rates in metastatic stages. Elucidating the molecular mechanisms underlying lymph node metastasis is critical for developing novel therapeutic interventions. <b>Methods:</b> Using data from the Cancer Genome Atlas (TCGA), we stratified gastric cancer patients by lymph node metastasis stage (N0-N3) to identify key molecular determinants of metastatic progression. Integrated bioinformatic analyses included differential gene expression profiling, protein-protein interaction networks, survival analysis, and immune microenvironment characterization, with a focused investigation of THPO. <b>Results:</b> We identified metastasis-associated genes, notably THPO, which exhibited stage-dependent upregulation in advanced lymph node metastasis (N3). Elevated THPO expression correlated significantly with adverse prognostic outcomes, including reduced overall survival, disease-free survival, and progression-free survival (all <i>p</i> < 0.05). Mechanistically, THPO promoted epithelial-mesenchymal transition and showed a positive correlation with M2 macrophage infiltration, implicating it in tumor progression. Furthermore, a THPO-centric prognostic signature demonstrated high accuracy in predicting 1-, 3-, and 5-year survival rates (AUC > 0.80), supporting its clinical utility. Furthermore, THPO knockdown in MKN-45 cells suppressed migration and blunted the EMT pathway, confirming its prometastatic role in gastric cancer. <b>Conclusion:</b> Our findings establish THPO as a promising biomarker and therapeutic target in gastric cancer. Molecular insights into lymph node metastasis may facilitate the development of precision prognostic tools and tailored therapeutic strategies, highlighting the imperative for further mechanistic and translational studies.</p>","PeriodicalId":12778,"journal":{"name":"Genetics research","volume":"2025 ","pages":"1438367"},"PeriodicalIF":2.1,"publicationDate":"2025-09-26","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12494475/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145232516","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Corrigendum to "Association Between rs920778 Polymorphisms and Cancer Risk: An Updated Meta-Analysis". “rs920778多态性与癌症风险之间的关系:一项更新的荟萃分析”的更正。
IF 2.1 4区 生物学
Genetics research Pub Date : 2025-09-18 eCollection Date: 2025-01-01 DOI: 10.1155/genr/9784318
{"title":"Corrigendum to \"Association Between <i>rs920778</i> Polymorphisms and Cancer Risk: An Updated Meta-Analysis\".","authors":"","doi":"10.1155/genr/9784318","DOIUrl":"10.1155/genr/9784318","url":null,"abstract":"<p><p>[This corrects the article DOI: 10.1155/genr/2340176.].</p>","PeriodicalId":12778,"journal":{"name":"Genetics research","volume":"2025 ","pages":"9784318"},"PeriodicalIF":2.1,"publicationDate":"2025-09-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12463535/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145185078","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
BRCA1 Exon 11 Mutations in Breast Cancer: A Study From Pakistan. 乳腺癌中的BRCA1外显子11突变:一项来自巴基斯坦的研究
IF 2.1 4区 生物学
Genetics research Pub Date : 2025-08-26 eCollection Date: 2025-01-01 DOI: 10.1155/genr/5544418
Murad Ali, Aziz Uddin, Sajid Ul Ghafoor, Atta Ur Rehman
{"title":"<i>BRCA1</i> Exon 11 Mutations in Breast Cancer: A Study From Pakistan.","authors":"Murad Ali, Aziz Uddin, Sajid Ul Ghafoor, Atta Ur Rehman","doi":"10.1155/genr/5544418","DOIUrl":"10.1155/genr/5544418","url":null,"abstract":"<p><p>Breast cancer ranks among the top causes of cancer-related deaths in women around the globe, with genetic mutations in the <i>BRCA1</i> gene being a frequent cause of breast or ovarian cancer. This study investigates hotspot mutations in exon 11 of the <i>BRCA1</i> gene among Pakistani women diagnosed with breast cancer. Thirty clinically diagnosed breast cancer patients, all women, were enrolled in the current study, and high-quality DNA was extracted from peripheral blood samples. Two of the twenty-five successfully sequenced samples had a homozygous missense variant (c.2312T > C: p.Leu771Ser) detected by Sanger sequencing after PCR amplification. Upon investigation in the ClinVar database, the identified variant showed conflicting interpretations of pathogenicity. Demographic data highlighted an early disease onset, showing that 56% of patients were under 50 years of age. The need for genetic screening was further supported by the fact that 24% of the patients had a positive family history of cancer. Our study emphasizes the necessity of screening <i>BRCA1</i> gene mutations to better understand the pathogenic potential of the identified variants in the Pakistani population.</p>","PeriodicalId":12778,"journal":{"name":"Genetics research","volume":"2025 ","pages":"5544418"},"PeriodicalIF":2.1,"publicationDate":"2025-08-26","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12404825/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144992375","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The Correlation and Clinicopathological Significance of TNFAIP8L3 and RAC1 Expression in Lung Adenocarcinoma. 肺腺癌组织中TNFAIP8L3与RAC1表达的相关性及临床病理意义
IF 2.1 4区 生物学
Genetics research Pub Date : 2025-08-26 eCollection Date: 2025-01-01 DOI: 10.1155/genr/9994311
Xuexin Shi, Haitao Guo, Kaihua Tian
{"title":"The Correlation and Clinicopathological Significance of TNFAIP8L3 and RAC1 Expression in Lung Adenocarcinoma.","authors":"Xuexin Shi, Haitao Guo, Kaihua Tian","doi":"10.1155/genr/9994311","DOIUrl":"10.1155/genr/9994311","url":null,"abstract":"<p><p><b>Background:</b> Lung adenocarcinoma (LUAD) remains one of the leading causes of cancer-related mortality worldwide. However, the expression and role of TIPE3 and RAC1 in LUAD are not well characterized. <b>Objective:</b> This study aimed to investigate the expression and clinicopathological significance of TNFAIP8L3 (TIPE3) and RAC1 in LUAD, as well as the relationship between these two proteins. <b>Methods:</b> Immunohistochemistry (IHC) was utilized to detect the expression of TIPE3 and RAC1 in tumor and adjacent normal tissues from 183 LUAD patients. A comprehensive analysis of clinicopathological data and subsequent follow-up outcomes was conducted in relation to TIPE3 and RAC1 expression levels. The correlation between these two proteins was also evaluated. <b>Results:</b> Both TIPE3 and RAC1 expression were upregulated in tumor tissues of LUAD. TIPE3 expression was significantly associated with advanced T stage (<i>p</i>=0.001), N stage (<i>p</i>=0.005), and TNM stage (<i>p</i>=0.001). Similarly, increased RAC1 expression was also associated with advanced T stage (<i>p</i>=0.003), N stage (<i>p</i>=0.003), and TNM stage (<i>p</i>=0.001). Kaplan-Meier survival analysis and Cox regression modeling demonstrated that increased TIPE3 and RAC1 expression were independent prognostic factors for poor outcomes in LUAD. Furthermore, Spearman correlation analysis revealed a positive association between TIPE3 and RAC1 expression (<i>r</i> = 0.305, <i>p</i> < 0.001). Combined expression of TIPE3 and RAC1 improved risk stratification and prognostic prediction in LUAD. <b>Conclusion:</b> TIPE3 and RAC1 serve as potential biomarkers of tumor progression and poor prognosis in LUAD, offering promising targets for future therapeutic interventions.</p>","PeriodicalId":12778,"journal":{"name":"Genetics research","volume":"2025 ","pages":"9994311"},"PeriodicalIF":2.1,"publicationDate":"2025-08-26","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12404833/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144992343","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
49, XXXYY: Parental Origin, Occurrence, and Clinical Phenotypes. 49, xxx:亲本来源,发生和临床表型。
IF 2.1 4区 生物学
Genetics research Pub Date : 2025-07-21 eCollection Date: 2025-01-01 DOI: 10.1155/genr/1368153
Yufang Du, Liangrong Liao, Xianda Wei, Yunting Ma, Meizhen Shi, Chunyan Li, Juliang Liu, Wenting Lin, Hao Zeng, Shaoke Chen, Baoheng Gui
{"title":"49, XXXYY: Parental Origin, Occurrence, and Clinical Phenotypes.","authors":"Yufang Du, Liangrong Liao, Xianda Wei, Yunting Ma, Meizhen Shi, Chunyan Li, Juliang Liu, Wenting Lin, Hao Zeng, Shaoke Chen, Baoheng Gui","doi":"10.1155/genr/1368153","DOIUrl":"10.1155/genr/1368153","url":null,"abstract":"<p><p>49, XXXYY is a rare form of sex chromosomal aneuploidy that has been reported in 11 cases worldwide. The parental origin of the extra sex chromosomes and the specific clinical features of this condition remain unclear. We recruited a case with 49, XXXYY and performed genome-wide copy number variation analysis using next-generation sequencing. In addition, the parental origin of the extra sex chromosomes was determined through short tandem repeats (STRs) locus genotyping. Furthermore, a comprehensive review and comparison of clinical phenotypes were conducted among 12 cases with 49, XXXYY. The patient exhibited a karyotype of 49, XXXYY without any mosaic patterns. No pathogenic microdeletions or microduplications (> 100 kb) were identified in autosomes 1-22. Analysis of the STR loci revealed that two of three X chromosomes originated from father. This suggests that the nondisjunction of chromosomes X and Y during stages I and II of meiotic spermatogenesis led to the production of an abnormal sperm with XXYY. Subsequently, fertilization of a normal oocyte with this abnormal sperm resulted in an abnormal zygote with pentasomy XXXYY. The main clinical features observed in these cases included varying degrees of mental retardation, minor facial dysmorphology, and gonadal or endocrine abnormalities. In conclusion, 49, XXXYY is a rare chromosomal disorder characterized by mental retardation and facial dysmorphology. Nondisjunction of chromosomes X and Y during stages I and II of meiotic spermatogenesis is a critical factor contributing to the development of this abnormal karyotype.</p>","PeriodicalId":12778,"journal":{"name":"Genetics research","volume":"2025 ","pages":"1368153"},"PeriodicalIF":2.1,"publicationDate":"2025-07-21","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12316498/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144775279","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
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