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A chronosequence of climosequences: The evolution of ecological soil thresholds in Hawaiian volcanic soils 气候序列的时间序列:夏威夷火山土壤生态土壤阈值的演化
IF 5.6 1区 农林科学
Geoderma Pub Date : 2025-07-11 DOI: 10.1016/j.geoderma.2025.117427
Thomas P. Haensel , Jesse Bloom Bateman , Tai McClellan Maaz , Jonathan L. Deenik , Noa K. Lincoln
{"title":"A chronosequence of climosequences: The evolution of ecological soil thresholds in Hawaiian volcanic soils","authors":"Thomas P. Haensel ,&nbsp;Jesse Bloom Bateman ,&nbsp;Tai McClellan Maaz ,&nbsp;Jonathan L. Deenik ,&nbsp;Noa K. Lincoln","doi":"10.1016/j.geoderma.2025.117427","DOIUrl":"10.1016/j.geoderma.2025.117427","url":null,"abstract":"<div><div>The soil-forming factors of climate and time directly influence mineral weathering, nutrient flow, and soil pedogenesis. Soil properties do not respond linearly to climate and time, but rather, follow a series of pedogenic thresholds that delimit soil process domains defined by dominant chemical buffer systems. These pedogenic thresholds relate to soil fertility and ecological gradients, although they are not equivalent due to differences in the dynamics between surface soils and the entire solum. Here, we identified thresholds in surface soils derived from Hawaiian substrates across gradients of water balance and soil substrate geologic age while controlling for other soil-forming factors (i.e., topography, biota, and parent material). We conducted extensive field sampling (n = 577) and analysis of soil properties, chiefly elemental analysis, pH, and exchangeable nutrients. With the use of previously published soil data (n = 285), we created a chronosequence (5, 15, 20, 120, 150, 450, 1,400, 4,100 ky) of eight climosequences. We statistically determined thresholds across each climosequence using four types of non-linear breakpoint analyses. We quantified thresholds delineating the exhaustion of primary minerals on all eight substrates and thresholds indicating the mobilization of iron on the three oldest soil substrates. Across the chronosequence, thresholds in surface soils shifted to drier climates (i.e., lower water balance values) as soil substrate age increased, following a highly predictable (R<sup>2</sup> = 0.94) logarithmic decay function, with rapid evolution occurring in young soils and deceleration of change occurring in older soils. The youngest substrate (5 ky) did not follow this logarithmic pattern, which we hypothesize (based on previous studies) is due to surface area reactivity limitations. The pedogenesis of Hawaiian soils and the evolution of their ecological soil thresholds offer a well-behaved model system for broader implications regarding soils forming in more complex, continental settings.</div></div>","PeriodicalId":12511,"journal":{"name":"Geoderma","volume":"460 ","pages":"Article 117427"},"PeriodicalIF":5.6,"publicationDate":"2025-07-11","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144596267","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Cover crops alter soil physicochemical properties: A global meta-analysis 覆盖作物改变土壤理化性质:一项全球荟萃分析
IF 5.6 1区 农林科学
Geoderma Pub Date : 2025-07-11 DOI: 10.1016/j.geoderma.2025.117436
Fulai Yan , Emmanuel Arthur
{"title":"Cover crops alter soil physicochemical properties: A global meta-analysis","authors":"Fulai Yan ,&nbsp;Emmanuel Arthur","doi":"10.1016/j.geoderma.2025.117436","DOIUrl":"10.1016/j.geoderma.2025.117436","url":null,"abstract":"<div><div>Cover crops are widely recognized for their potential to enhance soil health, but their effects on soil physicochemical properties under diverse conditions remain poorly understood. We conducted a global meta-analysis of 225 studies to quantify the impacts of cover crops on 15 key soil properties. Across all studies, cover crops significantly reduced soil bulk density by 3.2 % and penetration resistance by 11.8 %. They also increased water stable aggregates by 15.9 %, total porosity by 6.1 %, and water infiltration by 37.2 %. No significant changes were observed for soil air permeability, saturated hydraulic conductivity, soil pH, electrical conductivity, and cation exchange capacity. The effects of cover crops were influenced by climatic factors, management practices, and soil texture. Specifically, the mean annual temperature was positively correlated with reductions in bulk density and increases in soil water content, while mean annual precipitation correlated positively with changes in water infiltration and aggregate stability. Management practices, such as cover crop type, residue placement, and conservation tillage, further enhanced outcomes, with mixed and Poaceae cover crops showing the greatest improvements. Additionally, soil texture and initial soil pH influenced these effects, with fine- and medium-textured soils showing notable benefits. Relationships among soil parameters revealed synergistic improvements in porosity, infiltration, and aggregate stability, emphasizing the diverse benefits of cover crops to soil structure. These findings emphasize the significant potential of cover crops to enhance soil physical properties and water dynamics, establishing them as an essential component of sustainable agriculture in the context of climate change.</div></div>","PeriodicalId":12511,"journal":{"name":"Geoderma","volume":"460 ","pages":"Article 117436"},"PeriodicalIF":5.6,"publicationDate":"2025-07-11","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144596266","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
A global synthesis reveals that environmental factors drive the proportion of ectomycorrhizal exploration types 全球综合表明,环境因素决定了外生菌根勘探类型的比例
IF 5.6 1区 农林科学
Geoderma Pub Date : 2025-07-09 DOI: 10.1016/j.geoderma.2025.117430
Wei Guo , Cunguo Wang , Ivano Brunner , Yingtong Zhou , Junni Wang , Qinrong Tang , Mai-He Li
{"title":"A global synthesis reveals that environmental factors drive the proportion of ectomycorrhizal exploration types","authors":"Wei Guo ,&nbsp;Cunguo Wang ,&nbsp;Ivano Brunner ,&nbsp;Yingtong Zhou ,&nbsp;Junni Wang ,&nbsp;Qinrong Tang ,&nbsp;Mai-He Li","doi":"10.1016/j.geoderma.2025.117430","DOIUrl":"10.1016/j.geoderma.2025.117430","url":null,"abstract":"<div><div>Exploration types serve as a link between the morphological characteristics of hyphae in ectomycorrhizal fungi and the diverse nutrient-acquisition strategies employed by ectomycorrhizal trees. However, the influence of biological, climatic, edaphic and geomorphic factors on the prevalence of the contact and short-distance exploration types (CS) <em>versus</em> the medium-distance and long-distance exploration types (ML) remains inadequately understood within global forest ecosystems. Here, we conducted a global synthesis of 458 observations across 310 forest stands derived from 58 studies. We found that the proportion of CS exhibited unimodal patterns, while the proportion of ML displayed reverse unimodal patterns, in relation to latitude and nitrogen deposition. The proportion of CS decreased linearly, while that of ML increased non-linearly, leading to the decreased CS/ML ratio with advancing stand age. The CS/ML ratio significantly decreased with rising soil magnesium concentration. The relationships of the proportions of CS and ML with biological, climatic, edaphic and geomorphic factors varied among genus identities such as <em>Picea</em> and <em>Pinus</em>. They showed contrasting relationships of the proportions of CS and ML with soil pH and mean annual precipitation. The observed variations in exploration types underscore a significant shift in the resource exploration strategies of different hosts in forest ecosystems at various successional stages in response to alterations in nutrient/water availability. These changes have implications for the carbon sequestration capacity and potential of global forest ecosystems in the context of ongoing global climate change.</div></div>","PeriodicalId":12511,"journal":{"name":"Geoderma","volume":"460 ","pages":"Article 117430"},"PeriodicalIF":5.6,"publicationDate":"2025-07-09","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144587499","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Mapping clay fraction oxides in Brazil using Earth observation strategy 利用地球观测策略绘制巴西粘土氧化物分馏图
IF 5.6 1区 农林科学
Geoderma Pub Date : 2025-07-07 DOI: 10.1016/j.geoderma.2025.117425
Jorge Tadeu Fim Rosas , José A.M. Demattê , Nícolas Augusto Rosin , Raul Roberto Poppiel , Nélida E.Q. Silvero , Merilyn Taynara Accorsi Amorim , Heidy S. Rodríguez-Albarracín , Letícia Guadagnin Vogel , Bruno dos Anjos Bartsch , José João Lelis Leal de Souza , Lucas de Carvalho Gomes , Danilo César de Mello
{"title":"Mapping clay fraction oxides in Brazil using Earth observation strategy","authors":"Jorge Tadeu Fim Rosas ,&nbsp;José A.M. Demattê ,&nbsp;Nícolas Augusto Rosin ,&nbsp;Raul Roberto Poppiel ,&nbsp;Nélida E.Q. Silvero ,&nbsp;Merilyn Taynara Accorsi Amorim ,&nbsp;Heidy S. Rodríguez-Albarracín ,&nbsp;Letícia Guadagnin Vogel ,&nbsp;Bruno dos Anjos Bartsch ,&nbsp;José João Lelis Leal de Souza ,&nbsp;Lucas de Carvalho Gomes ,&nbsp;Danilo César de Mello","doi":"10.1016/j.geoderma.2025.117425","DOIUrl":"10.1016/j.geoderma.2025.117425","url":null,"abstract":"<div><div>The major oxides in the clay fraction of tropical soils are iron (Fe2O3), aluminum (Al2O3), and silicon (SiO2) oxides, which are responsible for the soil’s capacity to provide multiple ecosystem services. Therefore, they are used to classify the soils into different pedological classes. Despite their importance of these oxides, quantifying them on a large scale presents significant challenges. The most common method is laboratory sulfuric acid digestion, which is expensive, complex, and environmentally detrimental. To overcome these issues and provide faster results, we developed a satellite technique associated with machine learning (ML) to map Fe<sub>2</sub>O<sub>3</sub>, Al<sub>2</sub>O<sub>3</sub>, and SiO<sub>2</sub> in all agricultural areas in Brazil at 30 m resolution. Additionally, we tested the feasibility of the generated maps to infer soil weathering, and assist in the construction of pedological maps. A dataset, comprising 5,330 sites (0–20 cm and 80–100 cm) across all 27 states was employed in prediction. Six spectral variables obtained from the historical Landsat series (bare soil) and seven terrain attributes derived from a digital elevation model were employed to generate the Fe<sub>2</sub>O<sub>3</sub>, Al<sub>2</sub>O<sub>3</sub>, and SiO<sub>2</sub> maps, using the Random Forest algorithm. The predicted maps of oxides covered nearly 3.48 million km<sup>2</sup> (∼40 % of the national territory). The best predictions were observed for Fe<sub>2</sub>O<sub>3</sub> in the 0–20 cm layer (RMSE = 49.8 <span><span>g.kg</span><svg><path></path></svg></span><sup>−1</sup>, RPIQ = 1.82, and R<sup>2</sup> = 0.62), while the worst predictions were for SiO<sub>2</sub> in the 80–100 cm layer (RMSE = 65.3 <span><span>g.kg</span><svg><path></path></svg></span><sup>−1</sup>, RPIQ = 1.50 and R<sup>2</sup> = 0.22). It was possible to infer soil weathering using the Ki index. Despite the models not showing such high R<sup>2</sup> values, the results are aligned with legacy maps, highly weathered soils were observed in the plateaus of the Cerrado biome, while younger soils were observed in the arid Caatinga biome and waterlogged soils in the Pantanal biome. The generated maps also demonstrated a high potential for grouping pedological soil classes. They also revealed a relationship between oxide contents and the NDVI of sugarcane crops, indicating potential applications in crop management. Moreover, this satellite-based technique, supported by ML, presents a plausible approach to predict oxide fraction at high spatial resolution for large areas.</div></div>","PeriodicalId":12511,"journal":{"name":"Geoderma","volume":"460 ","pages":"Article 117425"},"PeriodicalIF":5.6,"publicationDate":"2025-07-07","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144570200","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Limited impact of organic fertilizers on soil phosphorus accumulation in a long-term field experiment with excess fertilization 在长期过量施肥的田间试验中,有机肥对土壤磷积累的影响有限
IF 5.6 1区 农林科学
Geoderma Pub Date : 2025-07-07 DOI: 10.1016/j.geoderma.2025.117426
M. Álvarez Salas , Jakob Magid , Dorette Müller-Stöver , Beatriz Gómez-Muñoz , Federica Tamburini , Astrid Oberson
{"title":"Limited impact of organic fertilizers on soil phosphorus accumulation in a long-term field experiment with excess fertilization","authors":"M. Álvarez Salas ,&nbsp;Jakob Magid ,&nbsp;Dorette Müller-Stöver ,&nbsp;Beatriz Gómez-Muñoz ,&nbsp;Federica Tamburini ,&nbsp;Astrid Oberson","doi":"10.1016/j.geoderma.2025.117426","DOIUrl":"10.1016/j.geoderma.2025.117426","url":null,"abstract":"<div><div>Understanding how fertilizer phosphorus (P) interacts with soils is necessary in order to use it efficiently. In the long-term field experiment CRUCIAL (Closing the Rural-Urban Nutrient Cycle − Investigations through Agronomic Long-term experiments), organic fertilizers were intentionally overapplied to test soil ecotoxicological limits. This has resulted in yearly P inputs of up to 463 kg·ha<sup>−1</sup> and positive P balances (input after crop offtake) for over 20 years. These inputs have occurred in sandy loam soils. Fertilization treatments included sewage sludge, compost, cattle manure, other organic fertilizers, and mineral NPK. We hypothesized that, given the high fertilizer P inputs, P accumulation in the topsoil (0–0.2 m), along with its distribution into sequentially extractable fractions, would vary depending on P fractions in the fertilizers. We measured P fractions and total P concentrations in both organic fertilizers and topsoils, and calculated two P budgets. The first budget compared topsoil total P concentrations from 2003 with those from 2022, considering the total fertilizer P inputs and crop offtake over that time. The second is a fractional P budget that uses P fractions in topsoils treated with NPK as a baseline to assess fertilization induced changes. Treatments with sludge, compost, or manure had positive P balances between 2152 and 2664 kg·ha<sup>−1</sup> over 20 years. Total P stocks in the topsoil increased by at least 869 kg·ha<sup>−1</sup> in treatments with sludge or compost compared to only 278 kg·ha<sup>−1</sup> with manure. Treatments supplying less resin extractable-P and more NaHCO<sub>3</sub>-P or NaOH-P retained a higher proportion of the fertilizer P, even in topsoils already saturated with P. Consequently, specific organic fertilizers have caused increases in soil P fractions corresponding to their own P fraction compositions. Still, between 59–87 % of the excess P applied could not be accounted for in topsoils after considering crop P offtake. Consequently, regardless of the fertilizer type, overfertilization led to excess P movement out of the topsoil layer, which is detrimental for the environment.</div></div>","PeriodicalId":12511,"journal":{"name":"Geoderma","volume":"460 ","pages":"Article 117426"},"PeriodicalIF":5.6,"publicationDate":"2025-07-07","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144570201","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Impacts of tree plantation-driven forest fragmentation on native soil bacteria and fungi: similar patterns, but contrasting mechanisms 人工林驱动的森林破碎化对原生土壤细菌和真菌的影响:相似的模式,但不同的机制
IF 5.6 1区 农林科学
Geoderma Pub Date : 2025-07-06 DOI: 10.1016/j.geoderma.2025.117423
Mengli Li , Chaoyou Jiang , Shucun Sun , Fengqun Meng
{"title":"Impacts of tree plantation-driven forest fragmentation on native soil bacteria and fungi: similar patterns, but contrasting mechanisms","authors":"Mengli Li ,&nbsp;Chaoyou Jiang ,&nbsp;Shucun Sun ,&nbsp;Fengqun Meng","doi":"10.1016/j.geoderma.2025.117423","DOIUrl":"10.1016/j.geoderma.2025.117423","url":null,"abstract":"<div><div>A global expansion of tree plantations, particularly in developing tropical and subtropical countries, has fragmented natural forests. Despite the importance of microorganisms in ecosystem services, it remains unclear whether plantation-driven fragmentation threatens microbial biodiversity. We hypothesize that bacterial and fungal diversity patterns on remnant forest “islands” surrounded by a “sea” of tree plantations follow the traditional island species–area relationship (SAR), i.e., larger fragments harbor more species. We examined the SAR patterns of soil bacteria and fungi and explored the mechanisms underlying the observed SAR using a cluster of 17 remnant natural forest fragments scattered across a “sea” of tree plantations in Yachang Forest Farm, Guangxi, China. As expected, both fragment-scale bacterial and fungal diversity increased with fragment area; however, neither bacterial nor fungal diversity was influenced by fragment isolation. The positive SARs for both bacteria and fungi were characterized by greater heterogeneity in community composition among localities on larger fragments. However, the mechanisms underlying the positive SARs differ between bacteria and fungi. The greater heterogeneity of bacterial community composition on larger fragments was associated with higher levels of soil pH heterogeneity, while the greater heterogeneity of fungal community composition was linked to increased geographic distances among localities on larger fragments. Our results suggest that the SAR for bacteria is primarily driven by habitat heterogeneity, whereas the SAR for fungi is primarily driven by dispersal limitation. These findings highlight urgent need for conservation efforts to maintain large, continuous remnant natural forest fragments to mitigate fragmentation-induced biodiversity loss.</div></div>","PeriodicalId":12511,"journal":{"name":"Geoderma","volume":"460 ","pages":"Article 117423"},"PeriodicalIF":5.6,"publicationDate":"2025-07-06","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144563342","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Bio-based fertilizers typically deliver on either high nutrient release or soil health parameters 生物基肥料通常提供高养分释放或土壤健康参数
IF 5.6 1区 农林科学
Geoderma Pub Date : 2025-07-05 DOI: 10.1016/j.geoderma.2025.117424
Tine Engedal, Bianca Messmer, Jakob Magid, Lars Stoumann Jensen, Veronika Hansen
{"title":"Bio-based fertilizers typically deliver on either high nutrient release or soil health parameters","authors":"Tine Engedal,&nbsp;Bianca Messmer,&nbsp;Jakob Magid,&nbsp;Lars Stoumann Jensen,&nbsp;Veronika Hansen","doi":"10.1016/j.geoderma.2025.117424","DOIUrl":"10.1016/j.geoderma.2025.117424","url":null,"abstract":"<div><div>The transition to a circular and bio-based economy requires nutrient recycling from agricultural, industrial, and societal by-products and wastes. Beyond their role in nutrient supply for crop production, bio-based fertilizers (BBFs) also have the potential to improve soil health by contributing organic matter. However, as the legal framework evolves and a broader range of BBFs becomes available, a key challenge for implementation and adaptation lies in the great variability of their nutritional value and effects on soil health. Therefore, the aim of this study was to examine the effects of a diverse sample of BBFs on both nutrient release (nitrogen, sulfur and phosphorus) and a range of soil health parameters. In an 11-month incubation study, we evaluated eleven different bio-based fertilizers: four digestates, two composts, insect frass, and by-products from animal, medicinal, and plant production and processing. The results revealed a trade-off between high nutrient release and soil health improvements. High N availability was significantly and negatively correlated to all examined soil health parameters, while most soil health parameters were positively linked to the amount of added carbon (C). To overcome the trade-off between nutrient availability and soil health, customized BBF blends with optimized nutrient and C profiles tailored to specific field needs may offer a practical solution for farmers. Further research, particularly under field conditions, is needed to fully understand the long-term effects of BBFs on soil properties and crop growth.</div></div>","PeriodicalId":12511,"journal":{"name":"Geoderma","volume":"460 ","pages":"Article 117424"},"PeriodicalIF":5.6,"publicationDate":"2025-07-05","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144563470","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Quantifying spatial and vertical variations in soil C:N relationships in permafrost-affected landscapes 冻土影响景观中土壤C:N关系的空间和垂直变化
IF 5.6 1区 农林科学
Geoderma Pub Date : 2025-07-02 DOI: 10.1016/j.geoderma.2025.117418
Joshua O. Minai , Julie D. Jastrow , Roser Matamala , Chien-Lu Ping , Gary J. Michaelson , Nicolas A. Jelinski
{"title":"Quantifying spatial and vertical variations in soil C:N relationships in permafrost-affected landscapes","authors":"Joshua O. Minai ,&nbsp;Julie D. Jastrow ,&nbsp;Roser Matamala ,&nbsp;Chien-Lu Ping ,&nbsp;Gary J. Michaelson ,&nbsp;Nicolas A. Jelinski","doi":"10.1016/j.geoderma.2025.117418","DOIUrl":"10.1016/j.geoderma.2025.117418","url":null,"abstract":"<div><div>Permafrost regions are experiencing rapid changes that affect carbon (C) and nitrogen (N) cycles, with implications for vegetation dynamics and gas exchanges with the atmosphere. Soil C:N ratio is a key indicator of organic matter quality, yet spatial estimates of N stocks and C:N ratios lag behind those for C. We used quantile regression forests to compare direct and indirect digital soil mapping approaches for predicting soil C:N ratios at 0–30, 30–60, and 60–100 cm depths across a latitudinal transect in Alaska. The indirect approach – deriving C:N from separately predicted C and N stocks – outperformed direct mapping for the surface layer (0–30 cm), while direct mapping was marginally better at greater depths. However, prediction accuracy decreased with depth for both methods. Temperature and topography were the most important predictors. Both approaches overestimated low and underestimated high C:N ratios, with direct mapping showing greater bias. Our results underscore the challenges of modeling C:N ratios in heterogeneous, data-sparse permafrost soils, but also suggest that indirect mapping holds promise if supported by more extensive datasets.</div></div>","PeriodicalId":12511,"journal":{"name":"Geoderma","volume":"460 ","pages":"Article 117418"},"PeriodicalIF":5.6,"publicationDate":"2025-07-02","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144523264","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Active motility and chemotactic movement regulate the microbial early-colonization and biodiversity 主动运动和趋化运动调节微生物的早期定植和生物多样性
IF 5.6 1区 农林科学
Geoderma Pub Date : 2025-06-30 DOI: 10.1016/j.geoderma.2025.117419
Yan Wang , Ali Ebrahimi , Guowei Chen , Zi Zhang , Kun Zhu , Shane Franklin , Yan Jin , Ying Liu , Gang Wang
{"title":"Active motility and chemotactic movement regulate the microbial early-colonization and biodiversity","authors":"Yan Wang ,&nbsp;Ali Ebrahimi ,&nbsp;Guowei Chen ,&nbsp;Zi Zhang ,&nbsp;Kun Zhu ,&nbsp;Shane Franklin ,&nbsp;Yan Jin ,&nbsp;Ying Liu ,&nbsp;Gang Wang","doi":"10.1016/j.geoderma.2025.117419","DOIUrl":"10.1016/j.geoderma.2025.117419","url":null,"abstract":"<div><div>Microbial dispersal and subsequent colonization of new niches are fundamental processes in microbial ecology, particularly in patchy environments like soil. However, the heterogeneity of soil pore spaces and the resulting fragmented aqueous habitats are known to significantly impede microbial dispersal rates and ranges. Despite this, the strategies microbes employ to overcome these abiotic constraints remain poorly understood. To address this, we developed a novel experimental system using porous ceramic surfaces to simulate hydrated soil environments, enabling direct quantification of early-stage bacterial colonization. Our findings reveal that distinct taxonomic and functional bacterial populations successfully colonized the porous ceramic surfaces, differing significantly from the original soil communities. Active motility and chemotaxis emerged as two key traits facilitating early-stage colonization. However, the advantages conferred by motility and chemotaxis were significantly reduced under drier soil conditions, typically at water contents below 25% (v/v). Under such conditions, non-motile bacteria relied on passive dispersal mechanisms or physical adhesion to colonize the porous surfaces. Furthermore, functional metagenomic profiling of the colonizing microbial populations uncovered a trade-off between growth and dispersal rates. This observed trade-off was incorporated into an agent-based model simulating microbial activity in soil, which explored how correlations between microbial functional genes influence community dynamics during early colonization. The simulations demonstrated that the growth-dispersal trade-off is crucial for enhancing and maintaining microbial diversity during colonization of new niches. Our study elucidates the key biophysical mechanisms driving microbial early-stage colonization dynamics from bulk soil to new environments, highlighting this process as a core ecological phenomenon in soil ecosystems.</div></div>","PeriodicalId":12511,"journal":{"name":"Geoderma","volume":"460 ","pages":"Article 117419"},"PeriodicalIF":5.6,"publicationDate":"2025-06-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144517271","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Gemmatirosa adaptations to arid and low soil organic carbon conditions worldwide 世界范围内对干旱和低土壤有机碳的适应
IF 5.6 1区 农林科学
Geoderma Pub Date : 2025-06-30 DOI: 10.1016/j.geoderma.2025.117420
Yuanyuan Bao , Tadeo Sáez-Sandino , Youzhi Feng , Xuebin Yan , Shiying He , Shilun Feng , Ruirui Chen , Hui Guo , Manuel Delgado-Baquerizo
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