{"title":"Challenges to optimal macadamia (<i>Macadamia</i> spp.) kernel quality in a changing climate.","authors":"Suzy Y Rogiers, Kevin P Quinlan, Jeremy D Bright","doi":"10.1071/FP24218","DOIUrl":"https://doi.org/10.1071/FP24218","url":null,"abstract":"<p><p>Macadamias (Macadamia spp.) are highly desired for their flavour and nutritional characteristics. Despite cultivation in their native habitat, unpredictable and extreme weather events are applying pressure on the Australian macadamia industry to maintain the production of high-quality kernels. The industry has experienced losses in yield and quality due to shifts in the timing and volume of rain in recent years, and this has identified the requirement for transformational changes in orchard agronomic practices. Pre-harvest conditions that impinge on kernel oil content, kernel recovery, whole kernels and kernel appearance are discussed in this review. The impact of harvest and storage conditions on kernel quality are also reviewed. We propose opportunities for further research to optimise on-farm practices and to safeguard kernel quality post-harvest. This includes building on existing research to advance our understanding of the interaction of genetics with plant response to climate change. It also requires innovation to advance technologies that foster precision management, both spatially and temporally, in an environmentally sensitive manner.</p>","PeriodicalId":12483,"journal":{"name":"Functional Plant Biology","volume":"52 ","pages":""},"PeriodicalIF":2.6,"publicationDate":"2025-03-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143752010","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Effects of cold and methyl jasmonate on the expression of miRNAs and target genes in response to vernalisation in two wheat cultivars (<i>Triticum aestivum</i> L.).","authors":"Nooshin Ashoori, Reza Fotovat, Ehsan MohseniFard","doi":"10.1071/FP24130","DOIUrl":"https://doi.org/10.1071/FP24130","url":null,"abstract":"<p><p>Wheat undergoes significant physiological changes during winter, driven by processes such as cold acclimation and vernalisation that are regulated by gene expression and phytohormones. We investigate the effects of methyl jasmonate (MeJA) and cold treatments on the expression of three specific miRNAs and the associated target genes in Baz spring wheat and Norstar winter wheat using qRT-PCR analysis. Our objective was to examine the impact of MeJA on vernalisation and cold adaptation in these genotypes. Results showed that MeJA had no significant impact on vernalisation and acclimation in Baz, while the compound decreased these traits in Norstar. Additionally, the expression of miRNAs in Norstar was significantly reduced after a 2-day cold treatment, particularly for miR156 and further reduced after 14days for miR172 and miR319 . In contrast, Baz showed varied gene expression responses, with an increase in miRNA levels after the 14-day cold treatment. MeJA combined with a 2-day cold treatment suppressed the expression of SPL , AP2 and MYB3 target genes, with the most pronounced suppression observed in SPL . However, AP2 was induced after 14-day cold treatment in both cultivars. The study highlighted an inverse relationship between miRNAs and target genes under vernalisation conditions, underscoring the complex regulatory interactions between genotype, miRNAs and the associated target genes. Therefore, these findings provide new insights into how MeJA and cold treatments modulate miRNA and gene expression, enhancing our understanding of wheat's adaptive response mechanisms.</p>","PeriodicalId":12483,"journal":{"name":"Functional Plant Biology","volume":"52 ","pages":""},"PeriodicalIF":2.6,"publicationDate":"2025-03-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143729406","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Jiayi Hong, Xiaofeng Feng, Yongping Cai, Muhammad Aamir Manzoor, Yunpeng Cao
{"title":"The role of nuclear factor-Y (NF-Y) transcription factor in plant growth and development.","authors":"Jiayi Hong, Xiaofeng Feng, Yongping Cai, Muhammad Aamir Manzoor, Yunpeng Cao","doi":"10.1071/FP25010","DOIUrl":"https://doi.org/10.1071/FP25010","url":null,"abstract":"<p><p>The nuclear factor-Y (NF-Y) transcription factor, also known as heme-activator protein (HAP) or CCAAT-binding factor (CBF), is a critical transcription factor widely present in eukaryotes. The number of NF-Y subunits has significantly increased in higher plants compared to animals and fungi. The NF-Y complex is composed of three subunits: (1) NF-YA; (2) NF-YB; and (3) NF-YC. NF-YB and NF-YC contain histone fold domains (HFDs), which can interact with NF-YA or other transcription factors, or directly bind to the promoter CCAAT box to regulate the transcription of downstream genes. NF-Y plays a significant role in various plant processes, including growth and development. This review elucidates the structural and functional aspects of NF-Y subunits, identified NF-Y complexes, and their molecular regulatory mechanisms. Understanding these facets of NF-Y provides valuable insights into advancing crop genetic improvement and promoting sustainable agricultural practices.</p>","PeriodicalId":12483,"journal":{"name":"Functional Plant Biology","volume":"52 ","pages":""},"PeriodicalIF":2.6,"publicationDate":"2025-03-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143729412","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"<i>Nt</i>DHS regulates leaf senescence by modulating gene translation in <i>Nicotiana tabacum</i>.","authors":"Junping Gao, Ying Wang, Xinxi He, Long Chen, Shuaibin Wang, Xinyao Zhang, Sirui Zhu, Xiaoxu Li, Xiaonian Yang, Wenxuan Pu, Yuanyuan Li","doi":"10.1071/FP24294","DOIUrl":"https://doi.org/10.1071/FP24294","url":null,"abstract":"<p><p>The biochemical and transcriptional regulatory mechanisms of chlorophyll metabolism have been extensively studied, but the translational regulatory mechanisms remain poorly understood. In this study, we found that Nt DHS1 deficiency in N. tabacum resulted in smaller leaves and increased leaf chlorophyll content. Protein content determination experiments revealed that the global protein synthesis of the Ntdhs1 mutant was decreased. A ribosome profiling sequence (Ribo-seq) assay showed that the translation level of genes related to cell growth was significantly reduced, while the translation level of chlorophyll metabolism related genes was significantly increased in Ntdhs1 mutant. Biochemical analysis further demonstrated that Nt DHS interacts with the translation initiation factor Nt eIF5A. Moreover, the Nteif5a1 mutant exhibited phenotypes similar to the Ntdhs1 mutant, including a reduced translation level of cell growth related genes and increased translation level of chlorophyll metabolism related genes. Our studies suggest that the Nt DHS-Nt eIF5A complex regulates leaf senescence by modulating the translation of specific genes.</p>","PeriodicalId":12483,"journal":{"name":"Functional Plant Biology","volume":"52 ","pages":""},"PeriodicalIF":2.6,"publicationDate":"2025-03-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143623525","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Drought resistance or herbivory defense strategy? Oxalate druses function in a forage xeric species.","authors":"D F Jaume, Y I Pelliza, A Nanni, M Tadey","doi":"10.1071/FP24299","DOIUrl":"https://doi.org/10.1071/FP24299","url":null,"abstract":"<p><p>Oxalate druse synthesis in plants helps to reduce drought stress by maintaining osmotic balance and might also act as a defence against herbivory by reducing nutritional quality. This study experimentally investigated the role of druses in Atriplex lampa under drought and herbivory treatments. We propose that both stressors trigger druse synthesis. Furthermore, if druse production is an adaptation to stress, the allocation of resources to other physiological functions should not be affected. These hypotheses were experimentally tested under greenhouse and natural field conditions. Leaves of A. lampa were collected from eight rangelands in Monte Desert in Argentina, which shared similar environmental characteristics but differed in stocking rates. The manipulative experiment in the greenhouse consisted in applying drought and herbivory treatments to A. lampa seedlings. The highest druse abundance was observed at intermediate stocking rates, suggesting resource limitation for druse synthesis at extreme stocking rates. The adaptive advantage of druse synthesis was evident only for drought stress treatment, where higher druse abundance was correlated with improved growth rates. When both stressors were combined, there was no difference in druse abundance with respect to control treatment, indicating that herbivory negatively influenced the adaptive response to drought. Druse synthesis is an adaptation to drought that is susceptible to herbivory stress.</p>","PeriodicalId":12483,"journal":{"name":"Functional Plant Biology","volume":"52 ","pages":""},"PeriodicalIF":2.6,"publicationDate":"2025-02-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143523182","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Differences between barley and maize revealed in limitations of photosystems I and II under high temperature and low air humidity.","authors":"Eugene A Lysenko","doi":"10.1071/FP24305","DOIUrl":"https://doi.org/10.1071/FP24305","url":null,"abstract":"<p><p>Non-photochemical quenching and limitations of the photosystem I and photosystem II activities were studied in C3 -plant barley and C4 -plant maize. Plants were exposed to prolonged heat stress under high and low air humidity. Both species decreased non-photochemical quenching at 37-42°C, which increased at 46°C. A decrease of photosystem II activity at 46°C in lower air humidity was achieved through different mechanisms. In barley, photosystem II was downregulated by the increase of non-photochemical quenching. In maize, photosystem II was downregulated by the increase of acceptor-side limitation. Analysis of transients also revealed differences between species. One second after a light induction, limitations flashes at the acceptor sides of both photosystems. Elevating the temperature decreased these flashes; acceptor-side limitations of both photosystems decreased proportional to each other. In maize, the size of flashes slightly diminished at 37°C and decreased more at 42-46°C. In barley, the size of flashes greatly decreased at 37°C and gradually returned to the control level under higher temperatures. Around photosystem II, the flash was quenched by a burst of non-photochemical quenching. In barley, the transient peaks of acceptor-side limitation and non-photochemical quenching were very similar at any temperature. This was not observed in maize.</p>","PeriodicalId":12483,"journal":{"name":"Functional Plant Biology","volume":"52 ","pages":""},"PeriodicalIF":2.6,"publicationDate":"2025-02-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143467647","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Samreen Arshad, Muhammad Luqman Qadir, Nazim Hussain, Qurban Ali, Shiming Han, Daoud Ali
{"title":"Advances in CRISPR/Cas9 technology: shaping the future of photosynthetic microorganisms for biofuel production.","authors":"Samreen Arshad, Muhammad Luqman Qadir, Nazim Hussain, Qurban Ali, Shiming Han, Daoud Ali","doi":"10.1071/FP24255","DOIUrl":"https://doi.org/10.1071/FP24255","url":null,"abstract":"<p><p>Use of fossil fuels causes environmental issues due to its inefficiency and and imminent depletion. This has led to interest in identifying alternative and renewable energy sources such as biofuel generation from photosynthetic organisms. A wide variety of prokaryotic and eukaryotic microorganisms, known as microalgae, have the potential to be economical and ecologically sustainable in the manufacture of biofuels such as bio-hydrogen, biodiesel, bio-oils, and bio-syngas. By using contemporary bioengineering techniques, the innate potential of algae to produce biomass of superior quality may be enhanced. In algal biotechnology, directed genome modification via RNA-guided endonucleases is a new approach. CRISPR/Cas systems have recently been frequently used to modify the genetic makeup of several aquatic and freshwater microalgae. The majority of research has used the Cas9-driven Type II system, one of two classes and six unique kinds of CRISPR systems, to specifically target desired genes in algae, and knock them out and down, or both. Using CRISPR technology to modify its genetic makeup, microalgae has produced more biomass and increased in lipid content. This review highlights the attempts made so far to target microalgae genome modification, discusses the prospects for developing the CRISPR platform for large-scale genome modification of microalgae, and identifies the opportunities and challenges in the development and distribution of CRISPR/Cas9 components.</p>","PeriodicalId":12483,"journal":{"name":"Functional Plant Biology","volume":"52 ","pages":""},"PeriodicalIF":2.6,"publicationDate":"2025-02-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143398862","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Comparative analysis of waterlogging and drought stress regulatory networks in barley (<i>Hordeum vulgare</i>).","authors":"Bahman Panahi","doi":"10.1071/FP24051","DOIUrl":"https://doi.org/10.1071/FP24051","url":null,"abstract":"<p><p>We applied a systems biology approach to gain a deep insight into the regulatory mechanisms of barley (Hordeum vulgare ) under drought and waterlogging stress conditions. To identify informative models related to stress conditions, we constructed meta-analysis and two distinct weighted gene co-expression networks. We then performed module trait association analyses. Additionally, we conducted functional enrichment analysis of significant modules to shed light on the biological performance of underlying genes in the two contrasting stresses. In the next step, we inferred the gene regulatory networks between top hub genes of significant modules, kinases, and transcription factors (TFs) using a machine learning algorithm. Our results showed that at power=10, the scale-free topology fitting index (R2) was higher than 0.8 and the connectivity mean became stable. We identified 31 co-expressed gene modules in barley, with 13 and 14 modules demonstrating significant associations with drought and waterlogging stress, respectively. Functional enrichment analysis indicated that these stress-responsive modules are involved in critical processes, including ADP-rybosylation factors (ARF) protein signal transduction, ethylene-induced autophagy, and phosphoric ester hydrolase activity. Specific TFs and kinases, such as C2C2-GATA, HB-BELL, and MADS-MIKC, were identified as key regulators under these stress conditions. Furthermore, certain TFs and kinases established unique connections with hub genes in response to waterlogging and drought conditions. These findings enhance our understanding of the molecular networks that modulate barley's response to drought and waterlogging stresses, offering insights into the regulatory mechanisms essential for stress adaptation.</p>","PeriodicalId":12483,"journal":{"name":"Functional Plant Biology","volume":"52 ","pages":""},"PeriodicalIF":2.6,"publicationDate":"2025-02-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143440563","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Gristin Rohula-Okunev, Priit Kupper, Arvo Tullus, Mai Kukumägi, Marili Sell, Ivika Ostonen
{"title":"Effect of increased air temperature and vapour pressure deficit on water relations, gas exchange, and stem increment in saplings of Norway spruce (<i>Picea abies</i>).","authors":"Gristin Rohula-Okunev, Priit Kupper, Arvo Tullus, Mai Kukumägi, Marili Sell, Ivika Ostonen","doi":"10.1071/FP24241","DOIUrl":"https://doi.org/10.1071/FP24241","url":null,"abstract":"<p><p>Whilst temperature (T ) increase on tree function has been well studied, the associated effect of vapour pressure deficit (VPD) is less clear. We investigated the impact of increasing T and VPD on canopy transpiration rate (E ), shoot gas exchange, and stem growth in Norway spruce (Picea abies ) saplings grown in organic and mineral soils in climate chambers with three treatment conditions for 12weeks: (1) 'ambient' (VPD≈0.5kPa); (2) 'highT' treatment (+3°C relative to ambient; VPD≈0.6kPa); and (3) 'highT/lowRH' treatment (+3°C and -7% RH relative to ambient; VPD≈0.8kPa). The stem diameter increment, assimilation rate (A ), and E were highest, and the needle-to-fine root biomass ratio was smallest in 'highT/lowRH' treatment (P A of trees grown in organic soil was higher (P <0.05) in 'highT/lowRH' treatment compared to ambient conditions, but no significant difference was found in mineral soil. Our findings indicate that the effect of a 3-°C temperature increase on spruce was marginal under well-watered conditions, and moderate VPD increase instead improved the tree's functioning. Thus, aside from temperature, the impact of the RH as a primary driver of the VPD should be considered when predicting spruce response to global warming.</p>","PeriodicalId":12483,"journal":{"name":"Functional Plant Biology","volume":"52 ","pages":""},"PeriodicalIF":2.6,"publicationDate":"2025-02-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143500344","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Lu Zhang, Xiawei Zhao, Yan Wang, Xinyu Ma, Haolin Li, Chengzhang Zhao
{"title":"Effects of selenium on leaf traits and photosynthetic characteristics of eggplant.","authors":"Lu Zhang, Xiawei Zhao, Yan Wang, Xinyu Ma, Haolin Li, Chengzhang Zhao","doi":"10.1071/FP24292","DOIUrl":"https://doi.org/10.1071/FP24292","url":null,"abstract":"<p><p>The response of leaf traits and photosynthetic characteristics to selenium (Se) application reflects plant adaptation strategies for selenium-enhanced accumulation of photosynthetic products. This study selected eggplant as the research subject and conducted a field experiment to better understand these relationships. This study included three Se treatments, foliar sprays of 0.5mgL-1 (T1), 1mgL-1 (T2), and 1.5mgL-1 (T3), with tap water as the control (CK). The results revealed that T1 and T2 significantly improved leaf traits and photosynthetic characteristics compared to CK, while T3 had a negative effect. Regarding the leaf area-leaf thickness (LA-LT) trade-off relationship, the T2 treatment favoured LA, whereas the CK, T1, and T3 treatments favoured LT, with trade-off values of T3>T1>CK. Regarding the net photosynthetic rate-transpiration rate (Pn -Tr ) trade-off relationship, the CK treatment favoured Tr , whereas the T1, T2, and T3 treatments favoured Pn , with trade-off values of T2>T1>T3. In T1 and T2, the eggplant specific leaf area and Pn showed non-significant and highly significant positive correlations, respectively, and in CK and T3 showed non-significant and highly significant negative correlations, respectively. These results indicate that foliar application of Se at appropriate concentrations can increase crop productivity in semi-arid areas.</p>","PeriodicalId":12483,"journal":{"name":"Functional Plant Biology","volume":"52 ","pages":""},"PeriodicalIF":2.6,"publicationDate":"2025-02-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143500347","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}