Crop SciencePub Date : 2024-10-24DOI: 10.1002/csc2.21397
Chengjun Wu, Liliana Florez‐Palacios, Andrea Acuna, Derrick Harrison, Daniel Rogers, John Carlin, Leandro Mozzoni, Henry T. Nguyen, Grover Shannon, Caio Canella Vieira
{"title":"Impact of flooding at the early reproductive growth stage on soybean yield and seed composition","authors":"Chengjun Wu, Liliana Florez‐Palacios, Andrea Acuna, Derrick Harrison, Daniel Rogers, John Carlin, Leandro Mozzoni, Henry T. Nguyen, Grover Shannon, Caio Canella Vieira","doi":"10.1002/csc2.21397","DOIUrl":"https://doi.org/10.1002/csc2.21397","url":null,"abstract":"Flooding stress is a growing threat to global soybean [<jats:italic>Glycine max</jats:italic> (L.) Merr.] production as the frequency and intensity of extreme precipitations are increasing due to climate change. Soybean is highly sensitive to flooding and substantial yield losses are observed due to a cascade of negative physiological responses induced by hypoxia. Hence, there is a pressing need for the development of flood‐tolerant genotypes. This study evaluated the grain yield and seed protein and oil content of 31 soybean genotypes over 2 years under both non‐flooding and flooding conditions, where flooding entailed a 4‐day partial water submergence during the early reproductive growth stages R1/R2. Mixed‐effects linear models were utilized to assess the impact of flood damage scores (FDSs, 1–4 scale) on observed phenotypes, as well as differences in observed phenotypes between tolerant, moderate, and susceptible genotypes across flooding and non‐flooding treatments. No significant impact of FDS was observed for seed protein and oil content. In addition, no significant differences in these phenotypes were observed between flooding and non‐flooding treatments across the various genotype categories. On average, for each unit increase in FDS, grain yield decreased by 432.7 kg ha<jats:sup>−1</jats:sup> (17.4%). Tolerant genotypes experienced roughly 33% yield losses between flooding and non‐flooding treatments, while moderate and susceptible genotypes experienced 44% and 51% yield losses, respectively. The advancements in genomics and phenomics are promising for the identification and incorporation of novel flood‐tolerant alleles through plant breeding, potentially mitigating flooding‐induced yield losses across diverse environmental conditions.","PeriodicalId":10849,"journal":{"name":"Crop Science","volume":"41 1","pages":""},"PeriodicalIF":2.3,"publicationDate":"2024-10-24","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142488748","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Crop SciencePub Date : 2024-10-22DOI: 10.1002/csc2.21398
Xiangyang Xu, Genqiao Li, Tezera W. Wolabu, Guihua Bai, Ruolin Bian, Amy Bernardo, Brett F. Carver, Yanqi Wu
{"title":"Characterization of a gene conferring resistance to US Russian wheat aphid biotypes in the Iranian wheat landrace PI 625139","authors":"Xiangyang Xu, Genqiao Li, Tezera W. Wolabu, Guihua Bai, Ruolin Bian, Amy Bernardo, Brett F. Carver, Yanqi Wu","doi":"10.1002/csc2.21398","DOIUrl":"https://doi.org/10.1002/csc2.21398","url":null,"abstract":"Russian wheat aphid (RWA, <jats:italic>Diuraphis noxia</jats:italic> Kurdjumov) is a highly invasive and destructive wheat pest evolving rapidly to overcome host resistance. Novel genes conferring resistance to multiple RWA biotypes are needed to sustain wheat production. The Iranian landrace PI 625139 is resistant to all five US RWA biotypes. To map the RWA resistance gene in PI 625139, both F<jats:sub>2</jats:sub> and F<jats:sub>2:3</jats:sub> populations were developed from cross PI 625139 × Smith's Gold, and the F<jats:sub>2:3</jats:sub> population was evaluated for responses to five RWA biotypes, RWA1, RWA2, RWA3/7, RWA6, and RWA8. RWA assays identified a single gene in PI 625139, designated <jats:italic>Dn625139</jats:italic>, conditioning resistance to all five US RWA biotypes. Selective genotyping of a subset of F<jats:sub>2</jats:sub> plants using genotyping‐by‐sequencing (GBS) revealed a set of single‐nucleotide polymorphism (SNP) markers on the short arm of chromosome 7D that are closely associated with RWA resistance. Kompetitive allele‐specific PCR (KASP) markers were developed from selected GBS‐SNPs in 7DS. Genetic analysis using the new KASP and simple sequence repeat (SSR) markers placed <jats:italic>Dn625139</jats:italic> to a 2.6 cM interval. <jats:italic>Dn625139</jats:italic> was 1.2 cM proximal to the KASP marker Stars‐KASP1007 (169.57 Mb) and 1.4 cM distal to the SSR marker Stars1039 (195.27 Mb) in the International Wheat Genome Sequencing Consortium (IWGSC) RefSeq v2.1 reference sequence, and co‐segregated with the SSR marker Stars1029 (180.82 Mb). <jats:italic>Dn625139</jats:italic> is a valuable gene conferring resistance to multiple RWA biotypes, and the molecular markers developed in this study can facilitate its rapid introgression into locally adapted cultivars to enhance wheat RWA resistance.","PeriodicalId":10849,"journal":{"name":"Crop Science","volume":"3 1","pages":""},"PeriodicalIF":2.3,"publicationDate":"2024-10-22","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142486651","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Crop SciencePub Date : 2024-10-20DOI: 10.1002/csc2.21390
S. Subhavyuktha, H. Usha Nandhini Devi, K. K. Kumar, P. Irene Vethamoni, N. Premalatha, S. Srividhya
{"title":"Employing empirical models to analyze stability of yield and quality traits in chili peppers (Capsicum species)","authors":"S. Subhavyuktha, H. Usha Nandhini Devi, K. K. Kumar, P. Irene Vethamoni, N. Premalatha, S. Srividhya","doi":"10.1002/csc2.21390","DOIUrl":"10.1002/csc2.21390","url":null,"abstract":"<p>Stability analysis plays a crucial role in plant breeding programs aimed at enhancing crop productivity and resilience. Chili yield stability studies based on the interaction of genotype × environment have been widely conducted, as stable yield is very substantial in the formation of sustainably high-yielding chili varieties. Multi-environmental trials, conducted across different seasons, locations, or both, are used to assess these G × E interactions through various statistical models. In this context, this review paper explores the understanding of stability analysis in chili breeding, the significance of genotype by environment interaction, and the methods employed in this domain, providing a comprehensive update on recent advancements in stability analysis specific to chili breeding. Furthermore, research studies conducted on stability analysis in chili breeding programs and software used to assess crop stability are featured, shedding light on the application, challenges, and future prospects in the field. The importance of stability analysis in developing stable genotypes and enhancing agricultural productivity amid evolving environmental conditions is herewith underscored. These insights are critical for breeding programs aiming to create robust genotypes capable of adapting to changing environmental conditions, ultimately contributing to more sustainable agricultural practices.</p>","PeriodicalId":10849,"journal":{"name":"Crop Science","volume":"64 6","pages":"2977-2997"},"PeriodicalIF":2.0,"publicationDate":"2024-10-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142452402","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Crop SciencePub Date : 2024-10-20DOI: 10.1002/csc2.21392
Francis Wanjohi Kiemo, Pál Salamon, Zoltán Tóth, Zoltán Szabó
{"title":"Defense strategies against sweet potato chlorotic stunt and pakakuy virus coinfection unraveled","authors":"Francis Wanjohi Kiemo, Pál Salamon, Zoltán Tóth, Zoltán Szabó","doi":"10.1002/csc2.21392","DOIUrl":"10.1002/csc2.21392","url":null,"abstract":"<p>This study into the response of two <i>Ipomoea batatas</i> (L.) Lam cultivars, Melinda and Tio Joe, to coinfection with sweet potato chlorotic stunt virus (SPCSV) and sweet potato pakakuy virus (SPPV), employed a comprehensive approach encompassing symptomatology, real-time quantitative polymerase chain reaction, metagenomics, and transcriptomics. SPCSV is a quarantine virus with synergistic effects, which decimate yields. SPPV is the most prevalent DNA virus in sweet potato germplasm, with a tendency to persist in meristems, posing a significant risk for germplasm transfer between territories. Graft inoculation experiments revealed that while Tio Joe remained asymptomatic for 12 weeks and suppressed virus replication, Melinda displayed symptoms early on and exhibited high virus titers. Metagenomic analyses corroborated these observations and confirmed that SPCSV and SPPV were responsible. Transcriptomic analysis unveiled disparities in gene expression between Melinda and Tio Joe. Differential gene expression was heightened and altered in Melinda as the viruses disrupted its gene expression. Its defense strategies, such as inducing abscisic acid signaling, were insufficient to overcome disruptive viral effects like oxidative stress, rendering it susceptible. In contrast, Tio Joe had relatively stable differential gene expression, indicating resistance to SPPV–SPCSV coinfection. Overexpressed genes such as sirtuin, rapid alkalization factor, and nuclear pore anchor triggered quantitative resistance, supported with enriched organelles such as mitochondrion and pathways such as proteasome and cutin, suberine, and wax biosynthesis. Tio Joe maintained its genome integrity and inhibited viral replication by tightly controlling gene expression and preventing reactive oxygen species accumulation.</p>","PeriodicalId":10849,"journal":{"name":"Crop Science","volume":"64 6","pages":"3438-3460"},"PeriodicalIF":2.0,"publicationDate":"2024-10-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1002/csc2.21392","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142451932","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Crop SciencePub Date : 2024-10-18DOI: 10.1002/csc2.21396
Liam Dixon, Irwin L. Goldman
{"title":"Genetic architecture of Cercospora leaf spot response in table beet with implications for other Beta vulgaris crop types","authors":"Liam Dixon, Irwin L. Goldman","doi":"10.1002/csc2.21396","DOIUrl":"10.1002/csc2.21396","url":null,"abstract":"<p>Table beet (<i>Beta vulgaris</i> subsp. <i>vulgaris</i>) production is threatened by the fungal disease Cercospora leaf spot (CLS). Infections are common across table beet's closest relatives, including Swiss chard, sugar beet, and fodder beet (all <i>B. v</i>. subsp. <i>vulgaris</i>). This study was conducted to characterize the genetic architecture underlying CLS response in table beet. A secondary objective was to test whether CLS-associated loci in table beet perform similarly across <i>B. vulgaris</i> crops. A diversity panel comprised of 168 table beet accessions and with an additional 70 accessions from all close relatives of table beet was screened for CLS response in replicated and inoculated field trials. Results from a genome-wide association study of additive effects revealed seven quantitative trait loci mapped to chromosomes 1, 3, 7, and 9 to explain 30% of the phenotypic variation for CLS response in table beet. When the performance of these loci was compared between a table beet background and a background of Swiss chard, sugar beet, and fodder beet, two loci exhibited significantly different responses. Among the <i>B. vulgaris</i> crops, these loci may be unique to table beet germplasm and could be useful for the improvement of CLS resistance in other crop types. For the improvement of CLS resistance in table beet, this study identified the cultivar Winter Keeper as a potentially valuable source of resistance. The architecture of CLS response points to recurrent selection and backcross methods as effective strategies for the improvement of CLS resistance in table beet.</p>","PeriodicalId":10849,"journal":{"name":"Crop Science","volume":"64 6","pages":"3352-3371"},"PeriodicalIF":2.0,"publicationDate":"2024-10-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1002/csc2.21396","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142449596","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Crop SciencePub Date : 2024-10-17DOI: 10.1002/csc2.21381
P. Agustin Boeri, J. Bryan Unruh, Kevin E. Kenworthy, Ann R. S. Blount, Marco Schiavon, Alexander J. Reisinger, Basil V. Iannone
{"title":"Nitrogen leaching and groundwater recharge of alternative lawn conversions in subtropical climates","authors":"P. Agustin Boeri, J. Bryan Unruh, Kevin E. Kenworthy, Ann R. S. Blount, Marco Schiavon, Alexander J. Reisinger, Basil V. Iannone","doi":"10.1002/csc2.21381","DOIUrl":"https://doi.org/10.1002/csc2.21381","url":null,"abstract":"Climate change, recurrent droughts, and increasing urban water demands have limited water availability in urban landscapes. Water quantity challenges have led to irrigation restrictions and turfgrass removal programs. An experiment was conducted at the University of Florida, West Florida Research and Education Center, Jay, FL, to evaluate the effect of turfgrass conversion to other landscape types on nutrient leaching and groundwater recharge. In April 2021, all surface vegetation was removed from existing turfgrass plots using a sod harvester. Thereafter, plots were planted or covered with three landscape types: a pollinator landscape with flowering forbs (<jats:italic>Mimosa sp</jats:italic>., <jats:italic>Coreopsis sp</jats:italic>., and <jats:italic>Phyla sp</jats:italic>.) + turfgrass (<jats:italic>Eremochloa ophiuroides</jats:italic>); a nitrogen (N)‐efficient lawn (<jats:italic>Arachis glabrata</jats:italic> + <jats:italic>Paspalum notatum</jats:italic>); and a low‐input landscape with unplanted woodchip mulch. Undisturbed turfgrass (<jats:italic>E. ophiuroides</jats:italic>) served as a control. For 2 years, leachate samples were collected weekly from previously installed 168‐L drainage lysimeters for NO<jats:sub>3</jats:sub>‐N and NH<jats:sub>4</jats:sub>‐N load determination. Temporal changes in landscape composition, groundwater recharge, water use, and soil bulk density were also quantified. While the mulch leached 44.7 kg ha<jats:sup>−1</jats:sup> NO<jats:sub>3</jats:sub>‐N year<jats:sup>−1</jats:sup>, this landscape still offers positive attributes, including erosion protection and water conservation. Conversely, the pollinator landscape minimized nitrogen leaching (8.3 kg ha<jats:sup>−1</jats:sup> NO<jats:sub>3</jats:sub>‐N year<jats:sup>−1</jats:sup>) due to their relatively greater water use rates (3.56 mm day<jats:sup>−1</jats:sup>). The turfgrass and nitrogen‐efficient lawn returned ∼35% of the water inputs as groundwater recharge while maintaining relatively low nitrogen leaching (3.6 and 2.7 kg ha<jats:sup>−1</jats:sup> NO<jats:sub>3</jats:sub>‐N year<jats:sup>−1</jats:sup>, respectively), making these landscapes efficient for protecting both water quality and quantity.","PeriodicalId":10849,"journal":{"name":"Crop Science","volume":"97 1","pages":""},"PeriodicalIF":2.3,"publicationDate":"2024-10-17","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142444036","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Crop SciencePub Date : 2024-10-17DOI: 10.1002/csc2.21383
Ross C. Braun, Parul Mandal, Emmanuel Nwachukwu, Alex Stanton
{"title":"The role of turfgrasses in environmental protection and their benefits to humans: Thirty years later","authors":"Ross C. Braun, Parul Mandal, Emmanuel Nwachukwu, Alex Stanton","doi":"10.1002/csc2.21383","DOIUrl":"10.1002/csc2.21383","url":null,"abstract":"<p>Beard and Green compiled one of the earliest reviews on the environmental and societal (cultural) benefits that living turfgrass systems (e.g., home lawns, athletic fields, golf courses, roadsides, and grounds) provide to humans and associated contemporary issues with turfgrass. Today, the benefits of vegetation systems are called ecosystem services, and the associated negative aspects are called disservices. Since 1994, a significant amount of research has been conducted to further understand these ecosystem services and disservices and discover new ecosystem services and disservices, which we summarize and identify the knowledge gaps in this review. Turfgrass systems provide positive economic benefits to the US economy and help increase property values; however, many of these ecosystem services are environmental and societal. Some environmental services include (1) improving soil health, quality, and stability; (2) oxygen production; (3) reducing stormwater runoff; (4) filtering water to protect waterways and recharging groundwater; (5) providing evaporative cooling and reducing sunlight glare to improve human comfort levels; (6) offering vertebrate and invertebrate habitat; and (7) offering solutions for recycling wastewater and biosolids. Some societal (cultural) services include (1) outdoor spaces that improve human mental and physical health, (2) increasing community and social harmony, (3) helping deter crime, and (4) reducing human contact with noxious weeds and human-disease insect vectors. Research, cooperative extension, and education efforts must be increased on these topics to continue to provide additional evidence of these ecosystem services to the public, policymakers, turfgrass practitioners, homeowners, students, and future generations.</p>","PeriodicalId":10849,"journal":{"name":"Crop Science","volume":"64 6","pages":"2909-2944"},"PeriodicalIF":2.0,"publicationDate":"2024-10-17","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1002/csc2.21383","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142448379","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Crop SciencePub Date : 2024-10-16DOI: 10.1002/csc2.21391
Ramon G. Leon, Rick Bennett, Saket Chandra
{"title":"Development of Brassica carinata A. Braun resistant to acetolactate synthase–inhibiting herbicides","authors":"Ramon G. Leon, Rick Bennett, Saket Chandra","doi":"10.1002/csc2.21391","DOIUrl":"10.1002/csc2.21391","url":null,"abstract":"<p><i>Brassica carinata</i> A. Braun (carinata) has become an important oil crop for biofuel production in subtropical regions. Carinata is highly sensitive to acetolactate synthase (ALS)-inhibiting herbicides, limiting its introduction into existing crop rotations. The objective of the study was to develop carinata lines resistant to ALS-inhibiting herbicides. A susceptible carinata line was crossed with a resistant <i>Brassica napus</i> L. line. Lines derived from those crosses were screened at high doses of imidazolinones, which allowed identifying five lines with high levels of resistance. Doses to reduce plant growth 50% (GR<sub>50</sub>) and cause 50% injury (ID<sub>50</sub>) were four to nine times greater than susceptible lines. Resistant lines exhibited cross resistance with halosulfuron (sulfonylurea). Resistance was confirmed under field conditions with doses 2X and 4X for imazethapyr and 4X–8X for halosulfuron of their respective label doses. While susceptible lines died, resistant lines exhibited no injury or growth reductions compared with nontreated controls. Sequencing of the <i>ALS</i> gene indicated that all resistant lines carried a Trp574Leu amino acid substitution, a mutation responsible for resistance in other species. Crosses between resistant lines and a susceptible line demonstrated that the inheritance of the mutation corresponded with the resistance phenotype in the F2. The resistance trait behaved as a single, fully dominant allele, which makes it easier to transfer it to carinata lines with desirable agronomic traits. The resistant lines developed here provide flexibility for use in multiple crop rotations and opens the possibility to use ALS-inhibiting herbicides for weed control within this crop's growing season.</p>","PeriodicalId":10849,"journal":{"name":"Crop Science","volume":"64 6","pages":"3339-3351"},"PeriodicalIF":2.0,"publicationDate":"2024-10-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1002/csc2.21391","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142443803","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Crop SciencePub Date : 2024-10-16DOI: 10.1002/csc2.21388
Md S. Islam, Lifang Qin, Per H. McCord, Sushma Sood, Muqing Zhang
{"title":"Marker trait association and candidate gene identification for brown rust disease in sugarcane","authors":"Md S. Islam, Lifang Qin, Per H. McCord, Sushma Sood, Muqing Zhang","doi":"10.1002/csc2.21388","DOIUrl":"https://doi.org/10.1002/csc2.21388","url":null,"abstract":"Brown rust (caused by <jats:italic>Puccinia melanocephala</jats:italic> H. & P. Sydow) is one of the most devastating diseases in commercial sugarcane production. It could reduce sugarcane yield by up to 50% depending on the susceptibility levels of cultivars. Breeding disease‐resistant cultivars is the most effective, economical, and environmentally friendly option to control brown rust. A genome‐wide association study was conducted on a field trial using 432 sugarcane clones following an augmented design with two replications. Brown rust was screened using the whorl inoculation method over two crop cycles. The genotype data were obtained through target enrichment sequencing technologies. The gene actions considering six different models and marker dosage effects were included during the marker‐trait analysis. A total of seven, nine, and seven nonredundant marker‐trait associations were identified for plant cane, first ratoon, and across two crop cycles, respectively. The most significant (<jats:italic>p</jats:italic>‐value 6.17E<jats:sup>−20</jats:sup>) marker (<jats:italic>chr01p59833543</jats:italic>) has the additive effect of −0.63 for the diplo‐additive model and reduced disease severity the most (41.35%) due to heterozygote (AG) over homozygote allele (AA) combination in the tested clones. Gene annotation of the monoploid sugarcane genome R570 suggested that six putative candidate genes were co‐located with significant markers associated with brown rust resistance in sugarcane. The putative candidate genes regulated the formation of a cell wall barrier that plays a crucial role in controlling brown rust pathogen infection. The results of this study will open the path to exploiting new resistance sources for brown rust resistance in commercial sugarcane.","PeriodicalId":10849,"journal":{"name":"Crop Science","volume":"40 1","pages":""},"PeriodicalIF":2.3,"publicationDate":"2024-10-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142439692","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Crop SciencePub Date : 2024-10-15DOI: 10.1002/csc2.21379
Martin Costa, James B. Holland, Natalia de Leon, Shawn M. Kaeppler
{"title":"Impact of genotype × environment interaction and selection history on genomic prediction in maize (Zea mays L.)","authors":"Martin Costa, James B. Holland, Natalia de Leon, Shawn M. Kaeppler","doi":"10.1002/csc2.21379","DOIUrl":"10.1002/csc2.21379","url":null,"abstract":"<p>Breeders made remarkable progress in improving productivity and stability of cultivars. Breeding progress relies on selecting favorable alleles for performance and stability to produce productive varieties across diverse environments. In this study, we analyzed the Genomes to Fields Initiative 2018–2019 genotype by environment interaction (G × E) dataset, focusing on three populations of double haploid (DH) lines derived from crossing inbrexpired Plant Variety Protection (ex-PVP) inbred line PHW65 with inbred lines PHN11, Mo44, and MoG. PHW65 is an Iodent/Lancaster-type inbred; PHN11 is an Iodent type ex-PVP line; Mo44 is a tropical-derived inbred; and MoG is an agronomically poor line derived from the variety Mastadon. Hybrids were produced by crossing the resulting DHs with Stiff Stalk testers PHT69 and LH195. The study's objective was to determine the donor inbreds' relative value and understand the impact of selection history on genomic prediction. We conducted a two-stage analysis to compare hybrid performance and G × E variance of the populations. G × E variance for yield was significantly lower in the PHW65 × PHN11 population relative to the PHW65 × MoG population. The reduced G × E variance of the PHN11 population led to increased indirect prediction accuracy (when training and testing data are drawn from the same population but different environments). In cross-validation, the PHN11 population had the greatest indirect prediction accuracy 45% of the time, followed by the Mo44 population (30%) and the MoG population (25%). Results demonstrate that prediction accuracy was greater in the population with the longest history of selection for favorable alleles (PHN11), contributing to greater yield stability.</p>","PeriodicalId":10849,"journal":{"name":"Crop Science","volume":"64 6","pages":"3293-3310"},"PeriodicalIF":2.0,"publicationDate":"2024-10-15","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1002/csc2.21379","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142439742","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}