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PET2BIDS: a library for converting Positron Emission Tomography data to BIDS. PET2BIDS：将正电子发射断层扫描数据转换为 BIDS 的库。
Journal of open source software Pub Date : 2024-01-01 Epub Date: 2024-08-23 DOI: 10.21105/joss.06067
Anthony Galassi, Martin Norgaard, Adam G Thomas, Gabriel Gonzalez-Escamilla, Claus Svarer, Chris Rorden, Granville J Matheson, Gitte M Knudsen, Robert B Innis, Melanie Ganz, Cyrus Eierud, Murat Bilgel, Cyril Pernet
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引用次数: 0
NEMSEER: A Python package for downloading and handlinghistorical National Electricity Market forecast data produced by theAustralian Energy Market Operator NEMSEER：用于下载和处理澳大利亚能源市场运营商制作的国家电力市场预测历史数据的 Python 软件包
Journal of open source software Pub Date : 2023-12-09 DOI: 10.21105/joss.05883
A. Prakash, A. Bruce, I. MacGill
{"title":"NEMSEER: A Python package for downloading and handling\u0000historical National Electricity Market forecast data produced by the\u0000Australian Energy Market Operator","authors":"A. Prakash, A. Bruce, I. MacGill","doi":"10.21105/joss.05883","DOIUrl":"https://doi.org/10.21105/joss.05883","url":null,"abstract":"","PeriodicalId":94101,"journal":{"name":"Journal of open source software","volume":"11 10","pages":""},"PeriodicalIF":0.0,"publicationDate":"2023-12-09","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"138585852","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
spiketools: a Python package for analyzing single-unit neural activity spiketools:用于分析单个神经活动的Python包
Journal of open source software Pub Date : 2023-11-14 DOI: 10.21105/joss.05268
Thomas Donoghue, Sandra Maesta-Pereira, Claire Zhixian Han, Salman Ehtesham Qasim, Joshua Jacobs
{"title":"spiketools: a Python package for analyzing single-unit neural activity","authors":"Thomas Donoghue, Sandra Maesta-Pereira, Claire Zhixian Han, Salman Ehtesham Qasim, Joshua Jacobs","doi":"10.21105/joss.05268","DOIUrl":"https://doi.org/10.21105/joss.05268","url":null,"abstract":"","PeriodicalId":94101,"journal":{"name":"Journal of open source software","volume":"18 2","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2023-11-14","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"134991681","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
ER-Evaluation: End-to-End Evaluation of Entity Resolution Systems er评估:实体解决系统的端到端评估
Journal of open source software Pub Date : 2023-11-11 DOI: 10.21105/joss.05619
Olivier Binette, Jerome P. Reiter
{"title":"ER-Evaluation: End-to-End Evaluation of Entity Resolution Systems","authors":"Olivier Binette, Jerome P. Reiter","doi":"10.21105/joss.05619","DOIUrl":"https://doi.org/10.21105/joss.05619","url":null,"abstract":"","PeriodicalId":94101,"journal":{"name":"Journal of open source software","volume":"53 23","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2023-11-11","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"135041597","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
MAHOS: Measurement Automation Handling and Orchestration System MAHOS:测量自动化处理和编排系统
Journal of open source software Pub Date : 2023-11-11 DOI: 10.21105/joss.05938
Kosuke Tahara
{"title":"MAHOS: Measurement Automation Handling and Orchestration System","authors":"Kosuke Tahara","doi":"10.21105/joss.05938","DOIUrl":"https://doi.org/10.21105/joss.05938","url":null,"abstract":"","PeriodicalId":94101,"journal":{"name":"Journal of open source software","volume":"54 4","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2023-11-11","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"135041592","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Using the tidyverse with terra objects: the tidyterra package 使用tidyverse和terra对象:tidyterra包
Journal of open source software Pub Date : 2023-11-10 DOI: 10.21105/joss.05751
Diego Hernangómez
{"title":"Using the tidyverse with terra objects: the tidyterra package","authors":"Diego Hernangómez","doi":"10.21105/joss.05751","DOIUrl":"https://doi.org/10.21105/joss.05751","url":null,"abstract":"","PeriodicalId":94101,"journal":{"name":"Journal of open source software","volume":"123 10","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2023-11-10","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"135136743","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
OpenFEPOPS: A Python implementation of the FEPOPS molecular similarity technique OpenFEPOPS: FEPOPS分子相似性技术的Python实现
Journal of open source software Pub Date : 2023-11-09 DOI: 10.21105/joss.05763
Yan-Kai Chen, Douglas R. Houston, Manfred Auer, Steven Shave
{"title":"OpenFEPOPS: A Python implementation of the FEPOPS molecular similarity technique","authors":"Yan-Kai Chen, Douglas R. Houston, Manfred Auer, Steven Shave","doi":"10.21105/joss.05763","DOIUrl":"https://doi.org/10.21105/joss.05763","url":null,"abstract":"","PeriodicalId":94101,"journal":{"name":"Journal of open source software","volume":" 5","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2023-11-09","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"135241389","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
pyflowline: a mesh-independent river network generator for hydrologic models Pyflowline:用于水文模型的网格无关的河网生成器
Journal of open source software Pub Date : 2023-11-07 DOI: 10.21105/joss.05446
Chang Liao, Matt G Cooper
{"title":"pyflowline: a mesh-independent river network generator for hydrologic models","authors":"Chang Liao, Matt G Cooper","doi":"10.21105/joss.05446","DOIUrl":"https://doi.org/10.21105/joss.05446","url":null,"abstract":"","PeriodicalId":94101,"journal":{"name":"Journal of open source software","volume":"40 20","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2023-11-07","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"135432380","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 2
Triumvirate: A Python/C++ package for three-point clustering measurements 用于三点聚类测量的Python/ c++包
Journal of open source software Pub Date : 2023-11-07 DOI: 10.21105/joss.05571
Mike Shengbo Wang, Florian Beutler, Naonori S. Sugiyama
{"title":"Triumvirate: A Python/C++ package for three-point clustering measurements","authors":"Mike Shengbo Wang, Florian Beutler, Naonori S. Sugiyama","doi":"10.21105/joss.05571","DOIUrl":"https://doi.org/10.21105/joss.05571","url":null,"abstract":"Triumvirate is a Python/C++ package for measuring the three-point clustering statistics in large-scale structure (LSS) cosmological analyses. Given a catalogue of discrete particles (such as galaxies) with their spatial coordinates, it computes estimators of the multipoles of the three-point correlation function, also known as the bispectrum in Fourier space, in the tri-polar spherical harmonic (TripoSH) decomposition proposed by Sugiyama et al. (2019). The objective of Triumvirate is to provide efficient end-to-end measurement of clustering statistics which can be fed into downstream galaxy survey analyses to constrain and test cosmological models. To this end, it builds upon the original algorithms in the hitomi code developed by Sugiyama et al. (2018, 2019), and supplies a user-friendly interface with flexible input/output (I/O) of catalogue data and measurement results, with the built program configurable through external parameter files and tracked through enhanced logging and warning/exception handling. For completeness and complementarity, methods for measuring two-point clustering statistics are also included in the package.","PeriodicalId":94101,"journal":{"name":"Journal of open source software","volume":"52 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2023-11-07","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"135480416","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Micro Manager: a Python package for adaptive and flexible two-scale coupling Micro Manager:一个Python包，用于自适应和灵活的双尺度耦合
Journal of open source software Pub Date : 2023-11-07 DOI: 10.21105/joss.05842
Ishaan Desai, Erik Scheurer, Carina Bringedal, Benjamin Uekermann
{"title":"Micro Manager: a Python package for adaptive and flexible two-scale coupling","authors":"Ishaan Desai, Erik Scheurer, Carina Bringedal, Benjamin Uekermann","doi":"10.21105/joss.05842","DOIUrl":"https://doi.org/10.21105/joss.05842","url":null,"abstract":"The Micro Manager facilitates coupling between simulation software packages, which solve problems at different physical scales. Broadly speaking, simulation-based analysis is an effective tool to gain insights in real-world scenarios without incurring the high cost of prototyping and testing. Complex simulations are oftentimes broken down into simpler components, which are resolved by tailor-made software. Such complex simulations can be of multiphysics nature, meaning different physics are solved in different parts of the domain. To do such multiphysics simulations, we can couple different software packages together. preCICE (Chourdakis et al., 2022) is an open-source coupling library for partitioned multiphysics simulations. However, sometimes the coupling is not just between different physics but also different physical scales, which is frequently referred to as multiscale coupling. To understand how the scales affect each other, both scales need to be solved simultaneously while being coupled in a bi-directional manner. The Micro Manager, together with preCICE, is capable of handling a multiphysics and multiscale coupling. We refer to the coarse scale as the macro scale, and the fine scale as the micro scale. The name Micro Manager is derived from its core functionality of controlling a set of micro-scale simulations and coupling them to one macro-scale simulation via preCICE.","PeriodicalId":94101,"journal":{"name":"Journal of open source software","volume":"345 3","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2023-11-07","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"135475294","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
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