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agweather-qaqc: An Interactive Python Package forQuality Assurance and Quality Control of Daily Agricultural Weather Dataand Calculation of Reference Evapotranspiration agweather-qaqc：用于每日农业气象数据质量保证和质量控制以及参考蒸散量计算的交互式 Python 软件包
Journal of open source software Pub Date : 2024-05-24 DOI: 10.21105/joss.06368
C. Dunkerly, Justin L. Huntington, Dan McEvoy, Asa Morway, Richard G. Allen
{"title":"agweather-qaqc: An Interactive Python Package for\u0000Quality Assurance and Quality Control of Daily Agricultural Weather Data\u0000and Calculation of Reference Evapotranspiration","authors":"C. Dunkerly, Justin L. Huntington, Dan McEvoy, Asa Morway, Richard G. Allen","doi":"10.21105/joss.06368","DOIUrl":"https://doi.org/10.21105/joss.06368","url":null,"abstract":"","PeriodicalId":94101,"journal":{"name":"Journal of open source software","volume":"5 10","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-05-24","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141099294","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
CRNPy: An Open-Source Python Library for Cosmic-RayNeutron Probe Data Processing CRNPy：用于宇宙线中子探测器数据处理的开源 Python 库
Journal of open source software Pub Date : 2024-05-24 DOI: 10.21105/joss.06025
Joaquin A. Peraza Rud, T. Ochsner, A. Patrignani
{"title":"CRNPy: An Open-Source Python Library for Cosmic-Ray\u0000Neutron Probe Data Processing","authors":"Joaquin A. Peraza Rud, T. Ochsner, A. Patrignani","doi":"10.21105/joss.06025","DOIUrl":"https://doi.org/10.21105/joss.06025","url":null,"abstract":"","PeriodicalId":94101,"journal":{"name":"Journal of open source software","volume":"1 6","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-05-24","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141100315","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Enlsip.jl: A Julia optimization package to solveconstrained nonlinear least-squares problems Enlsip.jl：解决有约束非线性最小二乘问题的 Julia 优化软件包
Journal of open source software Pub Date : 2024-05-22 DOI: 10.21105/joss.06226
Pierre Borie, Alain Marcotte, Fabian Bastin, Stéphane Dellacherie
{"title":"Enlsip.jl: A Julia optimization package to solve\u0000constrained nonlinear least-squares problems","authors":"Pierre Borie, Alain Marcotte, Fabian Bastin, Stéphane Dellacherie","doi":"10.21105/joss.06226","DOIUrl":"https://doi.org/10.21105/joss.06226","url":null,"abstract":"","PeriodicalId":94101,"journal":{"name":"Journal of open source software","volume":"43 6","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-05-22","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141108552","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
fellingdater: a toolkit to estimate, report and combinefelling dates derived from historical tree-ring series. fellingdater：一个工具包，用于估算、报告和组合从历史树环系列中得出的伐木日期。
Journal of open source software Pub Date : 2024-05-22 DOI: 10.21105/joss.06716
K. Haneca
{"title":"fellingdater: a toolkit to estimate, report and combine\u0000felling dates derived from historical tree-ring series.","authors":"K. Haneca","doi":"10.21105/joss.06716","DOIUrl":"https://doi.org/10.21105/joss.06716","url":null,"abstract":"","PeriodicalId":94101,"journal":{"name":"Journal of open source software","volume":"2 2","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-05-22","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141112910","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
BibDedupe: An Open-Source Python Library forBibliographic Record Deduplication BibDedupe：用于重复书目记录消除的开源 Python 库
Journal of open source software Pub Date : 2024-05-22 DOI: 10.21105/joss.06318
Gerit Wagner
{"title":"BibDedupe: An Open-Source Python Library for\u0000Bibliographic Record Deduplication","authors":"Gerit Wagner","doi":"10.21105/joss.06318","DOIUrl":"https://doi.org/10.21105/joss.06318","url":null,"abstract":"","PeriodicalId":94101,"journal":{"name":"Journal of open source software","volume":"2 3","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-05-22","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141108336","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
HealpixMPI.jl: an MPI-parallel implementation of theHealpix tessellation scheme in Julia HealpixMPI.jl：Healpix 细分方案在 Julia 中的 MPI 并行执行
Journal of open source software Pub Date : 2024-05-20 DOI: 10.21105/joss.06467
Leo A. Bianchi
{"title":"HealpixMPI.jl: an MPI-parallel implementation of the\u0000Healpix tessellation scheme in Julia","authors":"Leo A. Bianchi","doi":"10.21105/joss.06467","DOIUrl":"https://doi.org/10.21105/joss.06467","url":null,"abstract":"Spherical Harmonic Transforms (SHTs) can be seen as Fourier Transforms’ spherical, two-dimensional counterparts, casting real-space data to the spectral domain and vice versa. As in Fourier analysis where a function is decomposed into a set of amplitude coefficients, an SHT allows any spherically-symmetric field, defined in real space, to be decomposed into a set of complex harmonic coefficients 𝑎 ℓ,𝑚 , commonly referred to as alms, where each quantifies the contribution of the corresponding spherical harmonic function.","PeriodicalId":94101,"journal":{"name":"Journal of open source software","volume":"87 11","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-05-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141122969","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Kirstine.jl: A Julia Package for Bayesian OptimalDesign of Experiments Kirstine.jl：用于贝叶斯实验优化设计的 Julia 软件包
Journal of open source software Pub Date : 2024-05-20 DOI: 10.21105/joss.06424
Ludger Sandig
{"title":"Kirstine.jl: A Julia Package for Bayesian Optimal\u0000Design of Experiments","authors":"Ludger Sandig","doi":"10.21105/joss.06424","DOIUrl":"https://doi.org/10.21105/joss.06424","url":null,"abstract":"","PeriodicalId":94101,"journal":{"name":"Journal of open source software","volume":"23 6","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-05-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141120062","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
SPICY: a Python toolbox for meshless assimilation fromimage velocimetry using radial basis functions SPICY：使用径向基函数对图像速度测量进行无网格同化的 Python 工具箱
Journal of open source software Pub Date : 2024-01-16 DOI: 10.21105/joss.05749
P. Sperotto, M. Ratz, M. A. Mendez
{"title":"SPICY: a Python toolbox for meshless assimilation from\u0000image velocimetry using radial basis functions","authors":"P. Sperotto, M. Ratz, M. A. Mendez","doi":"10.21105/joss.05749","DOIUrl":"https://doi.org/10.21105/joss.05749","url":null,"abstract":"","PeriodicalId":94101,"journal":{"name":"Journal of open source software","volume":"48 50","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-01-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"139527971","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
dwctaxon, an R package for editing and validatingtaxonomic data in Darwin Core format dwctaxon 是一个 R 软件包，用于编辑和验证达尔文核心格式的分类数据
Journal of open source software Pub Date : 2024-01-12 DOI: 10.21105/joss.06215
Joel H. Nitta, W. Iwasaki
{"title":"dwctaxon, an R package for editing and validating\u0000taxonomic data in Darwin Core format","authors":"Joel H. Nitta, W. Iwasaki","doi":"10.21105/joss.06215","DOIUrl":"https://doi.org/10.21105/joss.06215","url":null,"abstract":"","PeriodicalId":94101,"journal":{"name":"Journal of open source software","volume":"24 9","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-01-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"139532729","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
SCIMAP: A Python Toolkit for Integrated Spatial Analysis of Multiplexed Imaging Data. SCIMAP：用于多路复用成像数据综合空间分析的 Python 工具包。
Journal of open source software Pub Date : 2024-01-01 Epub Date: 2024-05-29 DOI: 10.21105/joss.06604
Ajit J Nirmal, Peter K Sorger
{"title":"SCIMAP: A Python Toolkit for Integrated Spatial Analysis of Multiplexed Imaging Data.","authors":"Ajit J Nirmal, Peter K Sorger","doi":"10.21105/joss.06604","DOIUrl":"10.21105/joss.06604","url":null,"abstract":"<p><p>Multiplexed imaging data are revolutionizing our understanding of the composition and organization of tissues and tumors (\"Catching up with Multiplexed Tissue Imaging,\" 2022). A critical aspect of such \"tissue profiling\" is quantifying the spatial relationships among cells at different scales from the interaction of neighboring cells to recurrent communities of cells of multiple types. This often involves statistical analysis of 10<sup>7</sup> or more cells in which up to 100 biomolecules (commonly proteins) have been measured. While software tools currently cater to the analysis of spatial transcriptomics data (Liu et al., 2022), there remains a need for toolkits explicitly tailored to the complexities of multiplexed imaging data including the need to seamlessly integrate image visualization with data analysis and exploration. We introduce SCIMAP, a Python package specifically crafted to address these challenges. With SCIMAP, users can efficiently preprocess, analyze, and visualize large datasets, facilitating the exploration of spatial relationships and their statistical significance. SCIMAP's modular design enables the integration of new algorithms, enhancing its capabilities for spatial analysis.</p>","PeriodicalId":94101,"journal":{"name":"Journal of open source software","volume":"9 97","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11173324/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141319392","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
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