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ComFiT: a Python library for computational field theorywith topological defects ComFiT：带拓扑缺陷的计算场论 Python 库
Journal of open source software Pub Date : 2024-06-11 DOI: 10.21105/joss.06599
Vidar Skogvoll, Jonas Rønning
{"title":"ComFiT: a Python library for computational field theory\u0000with topological defects","authors":"Vidar Skogvoll, Jonas Rønning","doi":"10.21105/joss.06599","DOIUrl":"https://doi.org/10.21105/joss.06599","url":null,"abstract":"","PeriodicalId":94101,"journal":{"name":"Journal of open source software","volume":"30 23","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-06-11","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141355613","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Simulation Decomposition in Python Python 中的仿真分解
Journal of open source software Pub Date : 2024-06-10 DOI: 10.21105/joss.06713
Pamphile T. Roy, Mariia Kozlova
{"title":"Simulation Decomposition in Python","authors":"Pamphile T. Roy, Mariia Kozlova","doi":"10.21105/joss.06713","DOIUrl":"https://doi.org/10.21105/joss.06713","url":null,"abstract":"","PeriodicalId":94101,"journal":{"name":"Journal of open source software","volume":" 29","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-06-10","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141365677","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
MARTINI: Mock Array Radio Telescope Interferometry ofthe Neutral ISM MARTINI：中性 ISM 的模拟阵列射电望远镜干涉测量法
Journal of open source software Pub Date : 2024-06-08 DOI: 10.21105/joss.06860
K. Oman
{"title":"MARTINI: Mock Array Radio Telescope Interferometry of\u0000the Neutral ISM","authors":"K. Oman","doi":"10.21105/joss.06860","DOIUrl":"https://doi.org/10.21105/joss.06860","url":null,"abstract":"MARTINI is a modular Python package that takes smoothed-particle hydrodynamics (SPH) simulations of galaxies as input and creates synthetic spatially- and/or spectrally-resolved observations of the 21-cm radio emission line of atomic hydrogen (data cubes). The various aspects of the mock-observing process are divided logically into sub-modules handling the data cube, source galaxy, telescope beam pattern, noise, spectral model and SPH kernel. MARTINI is object-oriented: each sub-module provides a class (or classes) which can be configured as desired. For most sub-modules, base classes are provided to allow for straightforward customization. Instances of each sub-module class are given as parameters to an instance of a main\"Martini\"class; a mock observation is then constructed by calling a handful of functions to execute the desired steps in the mock-observing process.","PeriodicalId":94101,"journal":{"name":"Journal of open source software","volume":" 37","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-06-08","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141369944","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
weatherOz: An API Client for Australian Weather andClimate Data Resources in R weatherOz：用 R 开发的澳大利亚天气和气候数据资源 API 客户端
Journal of open source software Pub Date : 2024-06-07 DOI: 10.21105/joss.06717
R. Pires, Anna Hepworth, Rebecca O’Leary, Jonathan Carroll, James Goldie, D. Marchiori, P. Melloy, Mark Padgam, Hugh Parsonage, Adam H. Sparks
{"title":"weatherOz: An API Client for Australian Weather and\u0000Climate Data Resources in R","authors":"R. Pires, Anna Hepworth, Rebecca O’Leary, Jonathan Carroll, James Goldie, D. Marchiori, P. Melloy, Mark Padgam, Hugh Parsonage, Adam H. Sparks","doi":"10.21105/joss.06717","DOIUrl":"https://doi.org/10.21105/joss.06717","url":null,"abstract":"","PeriodicalId":94101,"journal":{"name":"Journal of open source software","volume":" 24","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-06-07","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141371076","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
SpeedyWeather.jl: Reinventing atmospheric generalcirculation models towards interactivity and extensibility SpeedyWeather.jl：重塑大气环流模型，实现互动性和可扩展性
Journal of open source software Pub Date : 2024-06-07 DOI: 10.21105/joss.06323
Milan Klöwer, Maximilian Gelbrecht, Daisuke Hotta, Justin Willmert, Simone Silvestri, G. L. Wagner, Alistair White, Sam Hatfield, Tom Kimpson, Navid C Constantinou, Chris Hill
{"title":"SpeedyWeather.jl: Reinventing atmospheric general\u0000circulation models towards interactivity and extensibility","authors":"Milan Klöwer, Maximilian Gelbrecht, Daisuke Hotta, Justin Willmert, Simone Silvestri, G. L. Wagner, Alistair White, Sam Hatfield, Tom Kimpson, Navid C Constantinou, Chris Hill","doi":"10.21105/joss.06323","DOIUrl":"https://doi.org/10.21105/joss.06323","url":null,"abstract":"","PeriodicalId":94101,"journal":{"name":"Journal of open source software","volume":" 49","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-06-07","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141374604","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 1
LinkingLines: Using the Hough Transform to Cluster LineSegments and Mesoscale Feature Extraction 链接线段：使用 Hough 变换聚类线段和中尺度特征提取
Journal of open source software Pub Date : 2024-06-07 DOI: 10.21105/joss.06147
Allison Kubo Hutchison, L. Karlstrom, Tushar Mittal
{"title":"LinkingLines: Using the Hough Transform to Cluster Line\u0000Segments and Mesoscale Feature Extraction","authors":"Allison Kubo Hutchison, L. Karlstrom, Tushar Mittal","doi":"10.21105/joss.06147","DOIUrl":"https://doi.org/10.21105/joss.06147","url":null,"abstract":"Linear feature analysis plays a fundamental role in geospatial applications, from detecting infrastructure networks to characterizing geological formations. In this paper, we introduce linkinglines , an open-source Python package tailored for the clustering and feature extraction of linear structures in geospatial data. Our package leverages the Hough Transform, commonly used in image processing, performs clustering of line segments in the Hough Space, and then provides unique feature extraction methods and visualization. linkinglines em-powers researchers, data scientists, and analysts across diverse domains to efficiently process, understand, and extract valuable insights from linear features, contributing to more informed decision-making and enhanced data-driven exploration. We have used linkinglines to map dike swarms with thousands of segments associated with Large Igneous Provinces in Kubo Hutchison et al. (2023).","PeriodicalId":94101,"journal":{"name":"Journal of open source software","volume":" 13","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-06-07","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141373994","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
ncompare: A Python package for comparing netCDFstructures ncompare：用于比较 netCDF 结构的 Python 软件包
Journal of open source software Pub Date : 2024-06-06 DOI: 10.21105/joss.06490
Daniel E. Kaufman, Walter E. Baskin
{"title":"ncompare: A Python package for comparing netCDF\u0000structures","authors":"Daniel E. Kaufman, Walter E. Baskin","doi":"10.21105/joss.06490","DOIUrl":"https://doi.org/10.21105/joss.06490","url":null,"abstract":"","PeriodicalId":94101,"journal":{"name":"Journal of open source software","volume":"104 1","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-06-06","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141381466","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
naturf: a package for generating urban parameters fornumerical weather modeling naturf：为数值天气建模生成城市参数的软件包
Journal of open source software Pub Date : 2024-06-06 DOI: 10.21105/joss.06712
Levi T. Sweet-Breu, Em Rexer, Chris R. Vernon, Melissa R. Allen-Dumas, Stefan Krawczyk
{"title":"naturf: a package for generating urban parameters for\u0000numerical weather modeling","authors":"Levi T. Sweet-Breu, Em Rexer, Chris R. Vernon, Melissa R. Allen-Dumas, Stefan Krawczyk","doi":"10.21105/joss.06712","DOIUrl":"https://doi.org/10.21105/joss.06712","url":null,"abstract":"","PeriodicalId":94101,"journal":{"name":"Journal of open source software","volume":"5 5","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-06-06","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141380680","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Pybehave: a hardware agnostic, Python-based frameworkfor controlling behavioral neuroscience experiments Pybehave：基于 Python- 的硬件无关框架，用于控制行为神经科学实验
Journal of open source software Pub Date : 2024-06-05 DOI: 10.21105/joss.06515
Evan M. Dastin-van Rijn, Joel Nielsen, Elizabeth M. Sachse, Christina Li, Megan E. Mensinger, Stefanie G. Simpson, Michelle C. Buccini, Francesca A. Iacobucci, David J. Titus, A. Widge
{"title":"Pybehave: a hardware agnostic, Python-based framework\u0000for controlling behavioral neuroscience experiments","authors":"Evan M. Dastin-van Rijn, Joel Nielsen, Elizabeth M. Sachse, Christina Li, Megan E. Mensinger, Stefanie G. Simpson, Michelle C. Buccini, Francesca A. Iacobucci, David J. Titus, A. Widge","doi":"10.21105/joss.06515","DOIUrl":"https://doi.org/10.21105/joss.06515","url":null,"abstract":".","PeriodicalId":94101,"journal":{"name":"Journal of open source software","volume":"36 7","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-06-05","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141382333","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
GeneScape: A Python package for gene ontologyvisualization GeneScape：用于基因本体可视化的 Python 软件包
Journal of open source software Pub Date : 2024-06-05 DOI: 10.21105/joss.06624
Istvan Albert
{"title":"GeneScape: A Python package for gene ontology\u0000visualization","authors":"Istvan Albert","doi":"10.21105/joss.06624","DOIUrl":"https://doi.org/10.21105/joss.06624","url":null,"abstract":"","PeriodicalId":94101,"journal":{"name":"Journal of open source software","volume":"83 5","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-06-05","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141385647","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
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