Botanical StudiesPub Date : 2023-07-06DOI: 10.1186/s40529-023-00390-z
R Vandegrift, D S Newman, B T M Dentinger, R Batallas-Molina, N Dueñas, J Flores, P Goyes, T S Jenkinson, J McAlpine, D Navas, T Policha, D C Thomas, B A Roy
{"title":"Richer than Gold: the fungal biodiversity of Reserva Los Cedros, a threatened Andean cloud forest.","authors":"R Vandegrift, D S Newman, B T M Dentinger, R Batallas-Molina, N Dueñas, J Flores, P Goyes, T S Jenkinson, J McAlpine, D Navas, T Policha, D C Thomas, B A Roy","doi":"10.1186/s40529-023-00390-z","DOIUrl":"https://doi.org/10.1186/s40529-023-00390-z","url":null,"abstract":"<p><strong>Background: </strong>Globally, many undescribed fungal taxa reside in the hyperdiverse, yet undersampled, tropics. These species are under increasing threat from habitat destruction by expanding extractive industry, in addition to global climate change and other threats. Reserva Los Cedros is a primary cloud forest reserve of ~ 5256 ha, and is among the last unlogged watersheds on the western slope of the Ecuadorian Andes. No major fungal survey has been done there, presenting an opportunity to document fungi in primary forest in an underrepresented habitat and location. Above-ground surveys from 2008 to 2019 resulted in 1760 vouchered collections, cataloged and deposited at QCNE in Ecuador, mostly Agaricales sensu lato and Xylariales. We document diversity using a combination of ITS barcode sequencing and digital photography, and share the information via public repositories (GenBank & iNaturalist).</p><p><strong>Results: </strong>Preliminary identifications indicate the presence of at least 727 unique fungal species within the Reserve, representing 4 phyla, 17 classes, 40 orders, 101 families, and 229 genera. Two taxa at Los Cedros have recently been recommended to the IUCN Fungal Red List Initiative (Thamnomyces chocöensis Læssøe and \"Lactocollybia\" aurantiaca Singer), and we add occurrence data for two others already under consideration (Hygrocybe aphylla Læssøe & Boertm. and Lamelloporus americanus Ryvarden).</p><p><strong>Conclusions: </strong>Plants and animals are known to exhibit exceptionally high diversity and endemism in the Chocó bioregion, as the fungi do as well. Our collections contribute to understanding this important driver of biodiversity in the Neotropics, as well as illustrating the importance and utility of such data to conservation efforts.</p><p><strong>Resumen: </strong>Antecedentes: A nivel mundial muchos taxones fúngicos no descritos residen en los trópicos hiper diversos aunque continúan submuestreados. Estas especies están cada vez más amenazadas por la destrucción del hábitat debido a la expansión de la industria extractivista además del cambio climático global y otras amenazas. Los Cedros es una reserva de bosque nublado primario de ~ 5256 ha y se encuentra entre las últimas cuencas hidrográficas no explotadas en la vertiente occidental de los Andes ecuatorianos. Nunca antes se ha realizado un estudio de diversidad micológica en el sitio, lo que significa una oportunidad para documentar hongos en el bosque primario, en hábitat y ubicación subrepresentatadas. El presente estudio recopila información entre el 2008 y 2019 muestreando material sobre todos los sustratos, reportando 1760 colecciones catalogadas y depositadas en el Fungario del QCNE de Ecuador, en su mayoría Agaricales sensu lato y Xylariales; además se documenta la diversidad mediante secuenciación de códigos de barras ITS y fotografía digital, la información está disponible en repositorios públicos digitales (GenBank e iNaturalist).</p><p><st","PeriodicalId":9185,"journal":{"name":"Botanical Studies","volume":"64 1","pages":"17"},"PeriodicalIF":3.4,"publicationDate":"2023-07-06","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10326184/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"10181024","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Botanical StudiesPub Date : 2023-06-16DOI: 10.1186/s40529-023-00391-y
Ou-Chi Chang, Wei-Yi Lin
{"title":"Variation of growth and transcriptome responses to arbuscular mycorrhizal symbiosis in different foxtail millet lines.","authors":"Ou-Chi Chang, Wei-Yi Lin","doi":"10.1186/s40529-023-00391-y","DOIUrl":"https://doi.org/10.1186/s40529-023-00391-y","url":null,"abstract":"<p><strong>Background: </strong>Arbuscular mycorrhizal fungi (AMF) have been applied to promote the growth of different crop species, but knowledge about the impacts of symbiosis on foxtail millet at the physiological and molecular levels have remained limited. In this study, we compared the mycorrhization phenotypes of one cultivar and three different landraces and performed a comprehensive transcriptomic analysis to assess the effects of genetic variation on the responses to symbiosis.</p><p><strong>Results: </strong>Our results showed that colonization by AMF did not enhance biomass accumulation but significantly increased grain production only in three lines. More than 2,000 genes were affected by AMF colonization in all lines. Most AM symbiosis-conserved genes were induced, but the induction levels varied between lines. Gene Ontology (GO) analysis showed that Biological Function terms related to nitrogen transport and assimilation were only enriched in TT8. Similarly, two of phosphate starvation-induced phosphate transporters were only simultaneously downregulated in TT8. In the other two lines, the enrichment of GO terms associated with cell wall reorganization and lignification was observed, though the effects were different.</p><p><strong>Conclusion: </strong>This study reveals the impacts of genetic variation of millet lines on the responses to AM symbiosis and provides information regarding AMF application for millet production.</p>","PeriodicalId":9185,"journal":{"name":"Botanical Studies","volume":"64 1","pages":"16"},"PeriodicalIF":3.4,"publicationDate":"2023-06-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10275850/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9655006","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Botanical StudiesPub Date : 2023-06-14DOI: 10.1186/s40529-023-00389-6
Nuttika Suwannasai, Ek Sangvichien, Cherdchai Phosri, Sirirath McCloskey, Niwana Wangsawat, Pisit Thamvithayakorn, Nutthaporn Ruchikachorn, Surang Thienhirun, Sureewan Mekkamol, Prakitsin Sihanonth, Margaret A Whalley, Anthony J S Whalley
{"title":"Exploring the Xylariaceae and its relatives.","authors":"Nuttika Suwannasai, Ek Sangvichien, Cherdchai Phosri, Sirirath McCloskey, Niwana Wangsawat, Pisit Thamvithayakorn, Nutthaporn Ruchikachorn, Surang Thienhirun, Sureewan Mekkamol, Prakitsin Sihanonth, Margaret A Whalley, Anthony J S Whalley","doi":"10.1186/s40529-023-00389-6","DOIUrl":"10.1186/s40529-023-00389-6","url":null,"abstract":"<p><p>The Xylariaceae and its relatives rank as one of the best-known members of the Ascomycota. They are now well recognized for their diversity, global distribution, ecological activities and their outstanding novel metabolites with wide ranging bioactivity.</p>","PeriodicalId":9185,"journal":{"name":"Botanical Studies","volume":"64 1","pages":"15"},"PeriodicalIF":3.4,"publicationDate":"2023-06-14","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10310687/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9799316","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Botanical StudiesPub Date : 2023-06-03DOI: 10.1186/s40529-023-00387-8
Shih-Hui Liu, Kuo-Hsiang Hung, Tsai-Wen Hsu, Peter C Hoch, Ching-I Peng, Tzen-Yuh Chiang
{"title":"New insights into polyploid evolution and dynamic nature of Ludwigia section Isnardia (Onagraceae).","authors":"Shih-Hui Liu, Kuo-Hsiang Hung, Tsai-Wen Hsu, Peter C Hoch, Ching-I Peng, Tzen-Yuh Chiang","doi":"10.1186/s40529-023-00387-8","DOIUrl":"https://doi.org/10.1186/s40529-023-00387-8","url":null,"abstract":"<p><strong>Background: </strong>While polyploids are common in plants, the evolutionary history and natural dynamics of most polyploid groups are still unclear. Owing to plentiful earlier systematic studies, Ludwigia sect. Isnardia (comprising 22 wetland taxa) is an ideal allopolyploid complex to investigate polyploid evolution and natural dynamics within and among taxa. With a considerable sampling, we concentrated on revisiting earlier phylogenies of Isnardia, reevaluating the earlier estimated age of the most recent common ancestor (TMRCA), exploring the correlation between infraspecific genetic diversity and ploidy levels, and inspecting interspecific gene flows among taxa.</p><p><strong>Results: </strong>Phylogenetic trees and network concurred with earlier phylogenies and hypothesized genomes by incorporating 192 atpB-rbcL and ITS sequences representing 91% of Isnardia taxa. Moreover, we detected three multi-origin taxa. Our findings on L. repens and L. sphaerocarpa were consistent with earlier studies; L. arcuata was reported as a multi-origin taxon here, and an additional evolutionary scenario of L. sphaerocarpa was uncovered, both for the first time. Furthermore, estimated Isnardia TMRCA ages based on our data (5.9 or 8.9 million years ago) are in accordance with earlier estimates, although younger than fossil dates (Middle Miocene). Surprisingly, infraspecific genetic variations of Isnardia taxa did not increase with ploidy levels as anticipated from many other polyploid groups. In addition, the exuberant, low, and asymmetrical gene flows among Isnardia taxa indicated that the reproductive barriers may be weakened owing to allopolyploidization, which has rarely been reported.</p><p><strong>Conclusions: </strong>The present research gives new perceptions of the reticulate evolution and dynamic nature of Isnardia and points to gaps in current knowledge about allopolyploid evolution.</p>","PeriodicalId":9185,"journal":{"name":"Botanical Studies","volume":"64 1","pages":"14"},"PeriodicalIF":3.4,"publicationDate":"2023-06-03","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10239408/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9581660","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Correction: MethylC‑analyzer: a comprehensive downstream pipeline for the analysis of genome‑wide DNA methylation.","authors":"Rita Jui-Hsien Lu, Pei-Yu Lin, Ming-Ren Yen, Bing-Heng Wu, Pao-Yang Chen","doi":"10.1186/s40529-023-00386-9","DOIUrl":"https://doi.org/10.1186/s40529-023-00386-9","url":null,"abstract":"","PeriodicalId":9185,"journal":{"name":"Botanical Studies","volume":"64 1","pages":"13"},"PeriodicalIF":3.4,"publicationDate":"2023-05-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10229517/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9564471","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Transcriptome profiles reveal gene regulation of ginger flowering induced by photoperiod and light quality.","authors":"Qinyu Deng, Yangtao Zhang, Kang Liu, Guo Zheng, Longyan Gao, Zhexin Li, Mengjun Huang, Yusong Jiang","doi":"10.1186/s40529-023-00388-7","DOIUrl":"https://doi.org/10.1186/s40529-023-00388-7","url":null,"abstract":"<p><strong>Background: </strong>Under natural conditions, ginger (Zingiber officinale Rosc.) rarely blossom and has seed, which limits new variety breeding of ginger and industry development. In this study, the effects of different photoperiods and light quality on flowering induction in ginger were performed, followed by gene expression analysis of flower buds differentiation under induced treatment using RNA-seq technology.</p><p><strong>Results: </strong>First, both red light and long light condition (18 h light/6 h dark) could effectively induce differentiation of flower buds in ginger. Second, a total of 3395 differentially expressed genes were identified from several different comparisons, among which nine genes, including CDF1, COP1, GHD7, RAV2-like, CO, FT, SOC1, AP1 and LFY, were identified to be associated with flowering in induced flower buds and natural leaf buds. Aside from four down-regulated genes (CDF1, COP1, GHD7 and RAV2-like), other five genes were all up-regulated expression. These differentially expressed genes were mainly classified into 2604 GO categories, which were further enriched into 120 KEGG metabolic pathways. Third, expression change of flowering-related genes in ginger indicated that the induction may negatively regulated expression of CDF1, COP1, GHD7 and RAV2-like, and subsequently positively regulated expression of CO, FT, SOC1, LFY and AP1, which finally led to ginger flowering. In addition, the RNA-seq results were verified by qRT-PCR analysis of 18 randomly selected genes, which further demonstrated the reliability of transcriptome analysis.</p><p><strong>Conclusion: </strong>This study revealed the ginger flowering mechanism induced by light treatment and provided abundant gene information, which contribute to the development of hybrid breeding of ginger.</p>","PeriodicalId":9185,"journal":{"name":"Botanical Studies","volume":"64 1","pages":"12"},"PeriodicalIF":3.4,"publicationDate":"2023-05-27","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10219913/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9584435","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Identification of qBK2.1, a novel QTL controlling rice resistance against Fusarium fujikuroi.","authors":"Szu-Yu Chen, Ming-Hsin Lai, Yi-Ling Chu, Dong-Hong Wu, Chih-Wei Tung, Yue-Jie Chen, Chia-Lin Chung","doi":"10.1186/s40529-023-00375-y","DOIUrl":"https://doi.org/10.1186/s40529-023-00375-y","url":null,"abstract":"<p><strong>Background: </strong>Bakanae disease caused by Fusarium fujikuroi is an increasing threat to rice production. The infected plants show symptoms such as elongation, slenderness, chlorosis, a large leaf angle, and even death. Bakanae disease is traditionally managed by seed treatment. However, fungicide-resistant F. fujikuroi isolates have emerged in several Asian areas, including Taiwan. This study aimed to identify new bakanae resistance quantitative trait loci (QTLs) and provide molecular markers to assist future breeding.</p><p><strong>Results: </strong>A population of F<sub>2:9</sub> recombinant inbred lines (RILs) was derived from the cross between an elite japonica Taiwanese cultivar 'Taikeng 16 (TK16)' and an indica variety 'Budda'. 'Budda' was found highly resistant to all 24 representative isolates of the F. fujikuroi population in Taiwan. For the RIL population, 6,492 polymorphic single nucleotide polymorphisms (SNPs) spanning the rice genome were obtained by genotyping-by-sequencing (GBS) technique, and the disease severity index (DSI) was evaluated by inoculation with a highly virulent F. fujikuroi isolate Ff266. Trait-marker association analysis of 166 RILs identified two QTLs in 'Budda'. qBK2.1 (21.97-30.15 Mb) is a novel and first bakanae resistance QTL identified on chromosome 2. qBK1.8 (5.24-8.66 Mb) partially overlaps with the previously reported qBK1.3 (4.65-8.41 Mb) on chromosome 1. The log of odds (LOD) scores of qBK1.8 and qBK2.1 were 4.75 and 6.13, accounting for 4.9% and 8.1% of the total phenotypic variation, respectively. 64 RILs carrying both qBK1.8 and qBK2.1 showed lower DSI (7%) than the lines carrying only qBK1.8 (15%), only qBK2.1 (13%), or none of the two QTLs (21%). For the future application of identified QTLs, 11 KBioscience competitive allele-specific PCR (KASP) markers and 3 insertion-deletion (InDel) markers were developed.</p><p><strong>Conclusions: </strong>Compared to other important rice diseases, knowledge of bakanae resistance has been insufficient, which limited the development and deployment of resistant cultivars. The discovery of qBK2.1 has provided a new source of bakanae resistance. The resistant RILs inheriting good plant type, good taste, and high yield characteristics from 'TK16' can be used as good resistance donors. Our newly developed markers targeting qBK2.1 and qBK1.8 can also serve as an important basis for future fine-mapping and resistance breeding.</p>","PeriodicalId":9185,"journal":{"name":"Botanical Studies","volume":"64 1","pages":"11"},"PeriodicalIF":3.4,"publicationDate":"2023-04-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10119339/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9753947","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Botanical StudiesPub Date : 2023-04-18DOI: 10.1186/s40529-023-00373-0
Mona M Ismail, Gehan A Ismail, Mostafa E Elshobary
{"title":"Morpho-anatomical, and chemical characterization of some calcareous Mediterranean red algae species.","authors":"Mona M Ismail, Gehan A Ismail, Mostafa E Elshobary","doi":"10.1186/s40529-023-00373-0","DOIUrl":"https://doi.org/10.1186/s40529-023-00373-0","url":null,"abstract":"<p><p>Climatic changes are anticipated to have a detrimental effect on calcifying marine species. Calcareous red algae may be especially vulnerable to seasonal variations since they are common and essential biologically, but there is little research on the morpho-anatomical, and chemical characterization of such species. This study conducted the seasonal investigation of the three dominant Mediterranean calcified red algae. Morphological and 18S rRNA analysis confirmed the identification of collected species as Corallina officinalis, Jania rubens, and Amphiroa rigida. In general, C. officinalis was represented in the four seasons and flourishing maximum in autumn (70% of total species individuals). While J. rubens species was represented in winter, autumn, and spring and completely absent in summer. A. rigida was abundant only in the summer season by 40%. A full morphological and anatomical description of these species were examined, and their chemical compositions (carbohydrate, protein, lipid, pigments, and elements content) were assessed in different seasons, where carbohydrates were the dominant accumulates followed by proteins and lipids. Pearson correlation analysis confirmed a positive correlation between salinity level and nitrogenous nutrients of the seawater with the pigment contents (phycobiliproteins, carotenoids, and chlorophyll a) of the studied seaweeds. The results proved that calcified red algae were able to deposit a mixture of calcium carbonates such as calcite, vaterite, calcium oxalate, calcite-III I calcium carbonate, and aragonite in variable forms depending on the species.</p>","PeriodicalId":9185,"journal":{"name":"Botanical Studies","volume":"64 1","pages":"10"},"PeriodicalIF":3.4,"publicationDate":"2023-04-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10113420/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9331003","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Botanical StudiesPub Date : 2023-04-17DOI: 10.1186/s40529-023-00374-z
Jan Šoch, Josef Šonka, Jan Ponert
{"title":"Acid scarification as a potent treatment for an in vitro germination of mature endozoochorous Vanilla planifolia seeds.","authors":"Jan Šoch, Josef Šonka, Jan Ponert","doi":"10.1186/s40529-023-00374-z","DOIUrl":"https://doi.org/10.1186/s40529-023-00374-z","url":null,"abstract":"<p><strong>Background: </strong>Vanilla planifolia is the most widely cultivated species of vanilla with high economic importance. However, seed germination under artificial conditions is difficult and yields low germination percentages. The seeds are adapted to endozoochorous dispersal, and we therefore tried to simulate the conditions in the digestive tract by acid scarification of seeds.</p><p><strong>Results: </strong>Immature seeds lacking dormancy, used as a control, showed the highest germination percentage. Among the treatments tested for mature seeds, the hydrochloric acid treatments were significantly the best in breaking dormancy and inducing germination, irrespective of the acid concentration and the presence of pepsin. Conventional treatment with a hypochlorite solution induced much lower germination percentage. Sulphuric acid at concentration 50% was too strong and caused damage to the seeds. Important factor is also high cultivation temperature 30 °C as there was nearly no germination at 25 °C.</p><p><strong>Conclusions: </strong>Our protocol significantly improves the efficiency of generative propagation of vanilla and allows for significantly higher germination percentages than previously described. The strongly positive effect of hydrochloric acid may be related to the adaptation of seeds to endozoochorous dispersal.</p>","PeriodicalId":9185,"journal":{"name":"Botanical Studies","volume":"64 1","pages":"9"},"PeriodicalIF":3.4,"publicationDate":"2023-04-17","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10110789/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9331878","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Botanical StudiesPub Date : 2023-04-13DOI: 10.1186/s40529-023-00372-1
Marjorie Cedeño-Sanchez, Rahel Schiefelbein, Marc Stadler, Hermann Voglmayr, Konstanze Bensch, Christopher Lambert
{"title":"Redisposition of apiosporous genera Induratia and Muscodor in the Xylariales, following the discovery of an authentic strain of Induratia apiospora.","authors":"Marjorie Cedeño-Sanchez, Rahel Schiefelbein, Marc Stadler, Hermann Voglmayr, Konstanze Bensch, Christopher Lambert","doi":"10.1186/s40529-023-00372-1","DOIUrl":"10.1186/s40529-023-00372-1","url":null,"abstract":"<p><strong>Background: </strong>The genus Induratia is based on Induratia apiospora, a xylarialean pyrenomycete from New Zealand with clypeate uniperitheciate stromata, hyaline apiospores and a nodulisporium-like anamorph. However, because of the lack of DNA data from the generic type, its phylogenetic affinities have remained unresolved. Recently, two fungal species with teleomorphs strikingly similar to Induratia were discovered in Thailand. However, they did not produce an anamorph and were found to be phylogenetically close to the species classified within the hyphomycete genus Muscodor, which was described after Induratia. Therefore, in 2020 the species of Muscodor were transferred to Induratia, and a new family Induratiaceae was proposed.</p><p><strong>Results: </strong>We have encountered an unpublished ex-holotype strain of Induratia apiospora among the holdings of the ATCC collection, enabling detailed morphological and molecular phylogenetic investigations. We observed the characteristic nodulisporium-like anamorph described in the original publication. Phylogenetic analyses of multigene sequence data revealed a close relationship of Induratia apiospora to the Barrmaeliaceae, while a close relationship to the Induratia species formerly classified within Muscodor was rejected.</p><p><strong>Conclusions: </strong>We here classify Induratia apiospora within the Barrmaeliaceae and consider Induratiaceae to be synonymous with the former. As the holotype specimen of Induratia apiospora is apparently lost, an isotype specimen from WSP is selected as lectotype. We also propose that the genus Muscodor is resurrected within the Xylariaceae, and formally transfer several Induratia species to Muscodor.</p>","PeriodicalId":9185,"journal":{"name":"Botanical Studies","volume":"64 1","pages":"8"},"PeriodicalIF":3.4,"publicationDate":"2023-04-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10102272/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9309593","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}