{"title":"State-of-the-Art and Future Prospects of Canine STR-Based Genotyping","authors":"B. Asch, F. Pereira","doi":"10.2174/1874402801003010045","DOIUrl":"https://doi.org/10.2174/1874402801003010045","url":null,"abstract":"The dog is the most common domestic animal in human environments and in many situations a dog may be a victim, a perpetrator or a link between a suspect and a crime scene. Therefore, biological material derived from dogs may constitute evidence in forensic caseworks and it may be necessary or helpful to obtain genetic profiles that would aid indi- vidual identification. Currently, the assessment of the genetic diversity of breeds, population structure, inbreeding, and the development of methodologies for population assignment are important areas of research in dogs and related species such as the grey wolf. Therefore, canine short tandem repeat (STR)-based genotyping is used by a significant number of popu- lation geneticists; however, for reasons we present here, it is utilized by a relatively small number of forensic practitio- ners. An extensive bibliographic search revealed a highly fragmented canine genotyping community working under less than well defined standards. In this work, we discuss the present developments and limitations of STR-based canine geno- typing. Furthermore, we recommend that a collaborative strategy for the implementation of standardization and harmoni- zation is crucial to the development of forensic canine genotyping.","PeriodicalId":88327,"journal":{"name":"The open forensic science journal","volume":"3 1","pages":"45-52"},"PeriodicalIF":0.0,"publicationDate":"2012-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"68071831","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Endemism Versus Dispersion: Contribution of Microbial Genetics for Forensic Evidences","authors":"R. Araújo","doi":"10.2174/1874402801003010014","DOIUrl":"https://doi.org/10.2174/1874402801003010014","url":null,"abstract":"The characterization, analysis and validation of evidence that concludes the description of an intentional act of biocrime or bioterrorism represent the main target of microbial forensics. But, even nowadays with the most recent tech- nical advances, it remains extremely difficult, labour-demanding and time consuming to investigate and confirm the origin of microbial strains and to identify the person or motif behind the crimes. The true extent of microbial diversity in indoor or outdoor environments may still be underestimated, but its origin and maintenance is starting now to be better under- stood. Biogeographic patterns and proves of endemism had been occasionally described for few bacterial communities, as well as for fungal populations. Other researchers sustain that microbes are simply so abundant that dispersion and migra- tion capacities support a probable global distribution. Additionally, they possess a remarkable tolerance and adaptation abilities to the most unfavourable environmental conditions. Human body represents other sort of microbial community different from soil and water communities that may be ruled by other variables, particularly the individual genetic back- ground. Nowadays, there is no doubt that molecular markers are important for microbe discriminating and, thus, genotyp- ing methodologies are increasing interest for forensic sciences. The advent of large-scale genotyping studies on microbial populations may provide a unique opportunity to compare genetic diversity within and among populations. The present mini-review focus the most recent developments regarding microbial genetics and population diversity, both community richness and genotype diversity, and its application for criminal cases and forensic evidence.","PeriodicalId":88327,"journal":{"name":"The open forensic science journal","volume":"3 1","pages":"14-21"},"PeriodicalIF":0.0,"publicationDate":"2012-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"68071750","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
D. Parra, D. García, S. Mendez, J. Cañón, S. Dunner
{"title":"High Mutation Rates in Canine Tetranucleotide Microsatellites: Too Much Risk for Genetic Compatibility Purposes?","authors":"D. Parra, D. García, S. Mendez, J. Cañón, S. Dunner","doi":"10.2174/1874402801003010009","DOIUrl":"https://doi.org/10.2174/1874402801003010009","url":null,"abstract":"The use and convenience of canine tetranucleotide microsatellite markers for forensic purposes is addressed. These are commonly used in human genetics due to their high polymorphism, ease of laboratorial management and low mutation rates. However, care should be taken before including these markers in canine panels due to the high mutation rates shown in this species and the risk of errors in paternity assignment. To answer this question a panel including 16 markers (8 of them tetranucleotides) were typed for the family members of the Dogmap Project reference panel, and their mutation rates calculated. The effect these rates would have in terms of the increase in the number of false positives is as- sessed. Excluding one single marker with extreme mutation rate from the panel considerably improves the average rate and the performance of the panel. Therefore, a careful examination of the mutational behaviour of the candidate markers is advised for any marker panel design, even prior to the assessment of their polymorphism.","PeriodicalId":88327,"journal":{"name":"The open forensic science journal","volume":"3 1","pages":"9-13"},"PeriodicalIF":0.0,"publicationDate":"2012-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"68070990","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Briana B. Smalling, J. Satkoski, Bradley K. Tom, W. Szeto, Bethany Joy-Alise Erickson, T. Spear, D. G. Smith, B. Budowle, K. Webb, M. Allard, S. Kanthaswamy
{"title":"Geographic Differences in Mitochondrial DNA (mtDNA) Distribution Among United States (US) Domestic Dog Populations","authors":"Briana B. Smalling, J. Satkoski, Bradley K. Tom, W. Szeto, Bethany Joy-Alise Erickson, T. Spear, D. G. Smith, B. Budowle, K. Webb, M. Allard, S. Kanthaswamy","doi":"10.2174/1874402801003010022","DOIUrl":"https://doi.org/10.2174/1874402801003010022","url":null,"abstract":"No geographic differences in mitochondrial DNA (mtDNA) distribution among United States (US) domestic dog populations have been detected to date. To test the hypothesis that regional differences exist, a 608 bp sequence of the canid mtDNA hypervariable region 1 (HV1) from 220 mixed breed animals from the Western, Northeastern, Midwestern, and Southern US were combined with 429 published mixed and pure breed dog HV1 sequences to form a substantial geographically representative dataset. With an increased sample size of regionally representative sequences, geographic substructure among regional populations was shown to be statistically significant using the modified Fisher's exact test and pairwise Fst. The results of the AMOVA showed that 91% of the variation is present within the regional dog populations. Based on these analyses, the significance of regional canine HV1 haplotype distributions and frequencies demonstrate further the value of regional and mixed breed canine mtDNA in forensic investigations in the US.","PeriodicalId":88327,"journal":{"name":"The open forensic science journal","volume":"3 1","pages":"22-32"},"PeriodicalIF":0.0,"publicationDate":"2012-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"68071773","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"A Guide for Mitochondrial DNA Analysis in Non-Human Forensic Investigations","authors":"F. Pereira, J. Carneiro, B. Asch","doi":"10.2174/1874402801003010033","DOIUrl":"https://doi.org/10.2174/1874402801003010033","url":null,"abstract":"In recent years, mitochondrial DNA (mtDNA) typing has become established as a powerful tool for forensic investigations. The sequencing of mtDNA is now a standard laboratory procedure for the examination of degraded casework samples of human origin, with unique advantages over nuclear DNA profiling systems. Nonetheless, the use of mtDNA in non-human forensic science has only recently gained attention, with applications in the profiling of 'silent witnesses' of crimes, traceability of food products and control of illegal trade of endangered species or drugs, among others. This review briefly describes some important features of mtDNA with relevance for forensic testing in different taxonomic groups and suggests appropriate laboratorial and analytic procedures to avoid erroneous interpreta- tions. It is imperative to merge a solid knowledge of mitochondrial genetics with rigorous methods of error prevention in order to permit the full approval of non-human mtDNA profiling in routine forensic work.","PeriodicalId":88327,"journal":{"name":"The open forensic science journal","volume":"3 1","pages":"33-44"},"PeriodicalIF":0.0,"publicationDate":"2012-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"68071818","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
R. Somiari, Ebenezer O Adebiyi, Livinus Ukachukwu, I. Igbe, Friday A. Anthony, A. O. Ogundele, Innocent Onuaha, M. Brainard, S. Lubert, C. Larson, S. Russell, N. Bharathan, S. Somiari
{"title":"STR Analysis of Human DNA Samples After Dry-State Ambient Temperature Storage in GenPlates","authors":"R. Somiari, Ebenezer O Adebiyi, Livinus Ukachukwu, I. Igbe, Friday A. Anthony, A. O. Ogundele, Innocent Onuaha, M. Brainard, S. Lubert, C. Larson, S. Russell, N. Bharathan, S. Somiari","doi":"10.2174/1874402801104010030","DOIUrl":"https://doi.org/10.2174/1874402801104010030","url":null,"abstract":"Dry-state room temperature storage of DNA is of interest because it promises to be a relatively more cost effective and environmentally friendly method for transport and storage of DNA. However, this approach must be validated prior to large scale adoption by the scientist that currently store blood samples frozen. In this study, we compared the yield of DNA isolated from GenPlates™ to that from frozen blood, and verified the quality of the DNA by evaluating the success of genotyping and allelic assignment using the PowerPlex 16 system. Using 24 blood specimens from 6 human subjects, we determined that DNA yield from GenPlates™ a 96 well microtitre plate based product for transport and storage of DNA in the dry-state and at ambient temperature was 4.9% more than the yield from frozen blood after 16 months storage. The STR profiles from GenPlates™ DNA displayed 100% concordance with the profile from DNA isolated from frozen blood. Our results demonstrate that yield and PowerPlex 16 STR profile of DNA after dry-state ambient temperature storage in GenPlates™ for 16 months are comparable to DNA from frozen blood and 100% allelic assignment was achieved using 1 ng of DNA isolated from GenPlates™.","PeriodicalId":88327,"journal":{"name":"The open forensic science journal","volume":"4 1","pages":"30-35"},"PeriodicalIF":0.0,"publicationDate":"2011-12-26","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"68071648","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Do HIV-Infected Incarcerated Sexual Offenders Deserve a Little More Attention?","authors":"D. Baltieri, D. Boer","doi":"10.2174/1874402801104010025","DOIUrl":"https://doi.org/10.2174/1874402801104010025","url":null,"abstract":"Sexual offenders are putatively at high risk of contracting and transmitting HIV as a result of their nonconsensual and coercive sexual practices. To identify and manage particular health and psychological needs among infected sexual offenders should be of high public interest. In this study, we aimed to compare incarcerated sexual offenders who reported with those that denied being HIV-positive, in terms of drug misuse, impulsiveness levels and recidivism risk. It was a cross-sectional research with 198 adult male offenders sentenced only for sexual crimes, recruited and interviewed in a Brazilian Penitentiary. HIV-infected sexual offenders showed higher sexual impulsiveness, more problems with drug misuse and higher recidivism risk than their counterparts. The total sample achieved a power of 93% and 87% to detect distinctions between both groups as regards sexual impulsiveness and problems with drug misuse, respectively. HIV-infected sexual offenders can be a distinguished group and new and effective management strategies should urgently be re-thought and put forward for them.","PeriodicalId":88327,"journal":{"name":"The open forensic science journal","volume":"4 1","pages":"25-29"},"PeriodicalIF":0.0,"publicationDate":"2011-10-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"68071644","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
C. Apostolidou, I. Eleminiadis, T. Koletsa, K. Natsis, S. Dalampiras, D. Psaroulis, S. Apostolidis, A. Psifidis, P. Tsikaras, S. Njau
{"title":"Application of the Maxillary Suture Obliteration Method For Estimating Age at Death in Greek Population","authors":"C. Apostolidou, I. Eleminiadis, T. Koletsa, K. Natsis, S. Dalampiras, D. Psaroulis, S. Apostolidis, A. Psifidis, P. Tsikaras, S. Njau","doi":"10.2174/1874402801104010015","DOIUrl":"https://doi.org/10.2174/1874402801104010015","url":null,"abstract":"A recently developed method for estimating adult skeletal age is based on maxillary suture obliteration. The purpose of this study is to test the accuracy of the revised maxillary suture method in estimating age at death on a skeletal sample from Greece. The sample consists of 271 skeletons (150 males, 121 females) of known age and sex and comes from several cemeteries of the country and from Human Skeletal Athens Collection. By using the method of Mann et al. we correctly estimated age for 89% of males and 84% of females. This finding suggests that the method is applicable to estimate the age-at-death in Greek population.","PeriodicalId":88327,"journal":{"name":"The open forensic science journal","volume":"4 1","pages":"15-19"},"PeriodicalIF":0.0,"publicationDate":"2011-05-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"68071616","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"A Historical Review of MDMA","authors":"S. Karch","doi":"10.2174/1874402801104010020","DOIUrl":"https://doi.org/10.2174/1874402801104010020","url":null,"abstract":"In less than 50 years the number of MDMA (3,4-Methylenedioxymethamphetamine or Ecstasy) users in the United States has gone from zero to nearly three million. For all of its popularity, very little is known about MDMA's probable mechanism of action, or the mechanisms by which it causes death and disability. Even less is known about this drug's checkered past, including dangerous plans by various government agencies to \"weaponize\" MDMA, and misleading research sponsored and propagated by the U.S. government. Recently, evidence has begun to emerge that MDMA may cause valvular heart disease and possibly myocardial disease as well. These issues have not yet appeared on the media radar. For that reason, an historical review of this fascinating drug was undertaken here.","PeriodicalId":88327,"journal":{"name":"The open forensic science journal","volume":"4 1","pages":"20-24"},"PeriodicalIF":0.0,"publicationDate":"2011-05-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.2174/1874402801104010020","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"68071634","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
M. Subirana, H. Méndez., J. C. Borondo, J. Canós, I. Galtés, J. Castellà, Á. Vidal, C. Vidal, J. Medallo
{"title":"Autopsy Findings in Ventricular Wall Rupture After Mitral Valve Replacement Case Report","authors":"M. Subirana, H. Méndez., J. C. Borondo, J. Canós, I. Galtés, J. Castellà, Á. Vidal, C. Vidal, J. Medallo","doi":"10.2174/1874402801104010012","DOIUrl":"https://doi.org/10.2174/1874402801104010012","url":null,"abstract":"Ventricular wall rupture after mitral valve replacement is an uncommon complication but often lethal. We report the autopsy findings in a case of a 77 year old woman suffering double mitral disease who underwent unsuccessful replacement of the mitral valve using a Saint Jude (ONXM 27/29) mechanical prosthesis. The patient developed consumptive coagulopathy and a type I left ventricular rupture. Her family filed a claim before a court pressing charges against the surgeon. A legal autopsy was ordered and performed. After our forensic report the family dropped the charges.","PeriodicalId":88327,"journal":{"name":"The open forensic science journal","volume":"4 1","pages":"12-14"},"PeriodicalIF":0.0,"publicationDate":"2011-05-06","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"68072134","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}