AstrobiologyPub Date : 2024-03-01DOI: 10.1089/ast.2021.0119
G Ozan Bozdag, Nadia Szeinbaum, Peter L Conlin, Kimberly Chen, Santiago Mestre Fos, Amanda Garcia, Petar I Penev, George A Schaible, Gareth Trubl
{"title":"Chapter 5: Major Biological Innovations in the History of Life on Earth.","authors":"G Ozan Bozdag, Nadia Szeinbaum, Peter L Conlin, Kimberly Chen, Santiago Mestre Fos, Amanda Garcia, Petar I Penev, George A Schaible, Gareth Trubl","doi":"10.1089/ast.2021.0119","DOIUrl":"10.1089/ast.2021.0119","url":null,"abstract":"<p><p>All organisms living on Earth descended from a single, common ancestral population of cells, known as LUCA-the last universal common ancestor. Since its emergence, the diversity and complexity of life have increased dramatically. This chapter focuses on four key biological innovations throughout Earth's history that had a significant impact on the expansion of phylogenetic diversity, organismal complexity, and ecospace habitation. First is the emergence of the last universal common ancestor, LUCA, which laid the foundation for all life-forms on Earth. Second is the evolution of oxygenic photosynthesis, which resulted in global geochemical and biological transformations. Third is the appearance of a new type of cell-the eukaryotic cell-which led to the origin of a new domain of life and the basis for complex multicellularity. Fourth is the multiple independent origins of multicellularity, resulting in the emergence of a new level of complex individuality. A discussion of these four key events will improve our understanding of the intertwined history of our planet and its inhabitants and better inform the extent to which we can expect life at different degrees of diversity and complexity elsewhere.</p>","PeriodicalId":8645,"journal":{"name":"Astrobiology","volume":"24 S1","pages":"S107-S123"},"PeriodicalIF":4.2,"publicationDate":"2024-03-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11071111/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140157503","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"物理与天体物理","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
AstrobiologyPub Date : 2024-03-01DOI: 10.1089/ast.2021.0139
Laura E Rodriguez, Thiago Altair, Ninos Y Hermis, Tony Z Jia, Tyler P Roche, Luke H Steller, Jessica M Weber
{"title":"Chapter 4: A Geological and Chemical Context for the Origins of Life on Early Earth.","authors":"Laura E Rodriguez, Thiago Altair, Ninos Y Hermis, Tony Z Jia, Tyler P Roche, Luke H Steller, Jessica M Weber","doi":"10.1089/ast.2021.0139","DOIUrl":"10.1089/ast.2021.0139","url":null,"abstract":"<p><p>Within the first billion years of Earth's history, the planet transformed from a hot, barren, and inhospitable landscape to an environment conducive to the emergence and persistence of life. This chapter will review the state of knowledge concerning early Earth's (Hadean/Eoarchean) geochemical environment, including the origin and composition of the planet's moon, crust, oceans, atmosphere, and organic content. It will also discuss abiotic geochemical cycling of the CHONPS elements and how these species could have been converted to biologically relevant building blocks, polymers, and chemical networks. Proposed environments for abiogenesis events are also described and evaluated. An understanding of the geochemical processes under which life may have emerged can better inform our assessment of the habitability of other worlds, the potential complexity that abiotic chemistry can achieve (which has implications for putative biosignatures), and the possibility for biochemistries that are vastly different from those on Earth.</p>","PeriodicalId":8645,"journal":{"name":"Astrobiology","volume":"24 S1","pages":"S76-S106"},"PeriodicalIF":4.2,"publicationDate":"2024-03-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140157502","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"物理与天体物理","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
AstrobiologyPub Date : 2024-03-01DOI: 10.1089/ast.2021.0104
Luoth Chou, Natalie Grefenstette, Schuyler Borges, Tristan Caro, Enrico Catalano, Chester E Harman, Jordan McKaig, Chinmayee Govinda Raj, Gareth Trubl, Amber Young
{"title":"Chapter 8: Searching for Life Beyond Earth.","authors":"Luoth Chou, Natalie Grefenstette, Schuyler Borges, Tristan Caro, Enrico Catalano, Chester E Harman, Jordan McKaig, Chinmayee Govinda Raj, Gareth Trubl, Amber Young","doi":"10.1089/ast.2021.0104","DOIUrl":"10.1089/ast.2021.0104","url":null,"abstract":"<p><p>The search for life beyond Earth necessitates a rigorous and comprehensive examination of biosignatures, the types of observable imprints that life produces. These imprints and our ability to detect them with advanced instrumentation hold the key to our understanding of the presence and abundance of life in the universe. Biosignatures are the chemical or physical features associated with past or present life and may include the distribution of elements and molecules, alone or in combination, as well as changes in structural components or physical processes that would be distinct from an abiotic background. The scientific and technical strategies used to search for life on other planets include those that can be conducted <i>in situ</i> to planetary bodies and those that could be observed remotely. This chapter discusses numerous strategies that can be employed to look for biosignatures directly on other planetary bodies using robotic exploration including those that have been deployed to other planetary bodies, are currently being developed for flight, or will become a critical technology on future missions. Search strategies for remote observations using current and planned ground-based and space-based telescopes are also described. Evidence from spectral absorption, emission, or transmission features can be used to search for remote biosignatures and technosignatures. Improving our understanding of biosignatures, their production, transformation, and preservation on Earth can enhance our search efforts to detect life on other planets.</p>","PeriodicalId":8645,"journal":{"name":"Astrobiology","volume":"24 S1","pages":"S164-S185"},"PeriodicalIF":4.2,"publicationDate":"2024-03-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140157506","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"物理与天体物理","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
AstrobiologyPub Date : 2024-03-01DOI: 10.1089/ast.2023.0116
Lucas Mix
{"title":"Foreword to the Astrobiology Primer 3.0.","authors":"Lucas Mix","doi":"10.1089/ast.2023.0116","DOIUrl":"10.1089/ast.2023.0116","url":null,"abstract":"","PeriodicalId":8645,"journal":{"name":"Astrobiology","volume":"24 S1","pages":"S1-S3"},"PeriodicalIF":4.2,"publicationDate":"2024-03-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140157508","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"物理与天体物理","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
AstrobiologyPub Date : 2024-03-01Epub Date: 2024-02-13DOI: 10.1089/ast.2023.0094
Joseph W Bull
{"title":"Life Is Uncertain: Inherent Variability Exhibited by Organisms, and at Higher Levels of Biological Organization.","authors":"Joseph W Bull","doi":"10.1089/ast.2023.0094","DOIUrl":"10.1089/ast.2023.0094","url":null,"abstract":"<p><p>Organisms act stochastically. A not uncommon view in the ecological literature is that this is mainly due to the observer having insufficient information or a stochastic environment-and not partly because organisms themselves respond with inherent unpredictability. In this study, I compile the evidence that contradicts that view. Organisms generate uncertainty internally, which results in irreducible stochastic responses. I consider why: for instance, stochastic responses are associated with greater adaptability to changing environments and resource availability. Over longer timescales, biologically generated uncertainty influences behavior, evolution, and macroecological processes. Indeed, it could be stated that organisms are systems <i>defined</i> by the internal generation, magnification, and record-keeping of uncertainty as inputs to responses. Important practical implications arise if organisms can indeed be defined by an association with specific classes of inherent uncertainty: not least that isolating those signatures then provides a potential means for detecting life, for considering the forms that life could theoretically take, and for exploring the wider limits to how life might become distributed. These are all fundamental goals in astrobiology.</p>","PeriodicalId":8645,"journal":{"name":"Astrobiology","volume":" ","pages":"318-327"},"PeriodicalIF":4.2,"publicationDate":"2024-03-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"139728871","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"物理与天体物理","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
AstrobiologyPub Date : 2024-03-01DOI: 10.1089/ast.2023.0074
Laura M Barge, Gregory P Fournier
{"title":"Considerations for Detecting Organic Indicators of Metabolism on Enceladus.","authors":"Laura M Barge, Gregory P Fournier","doi":"10.1089/ast.2023.0074","DOIUrl":"10.1089/ast.2023.0074","url":null,"abstract":"<p><p>Enceladus is of interest to astrobiology and the search for life since it is thought to host active hydrothermal activity and habitable conditions. It is also possible that the organics detected on Enceladus may indicate an active prebiotic or biotic system; in particular, the conditions on Enceladus may favor mineral-driven protometabolic reactions. When including metabolism-related biosignatures in Enceladus mission concepts, it is necessary to base these in a clearer understanding of how these signatures could also be produced prebiotically. In addition, postulating which biological metabolisms to look for on Enceladus requires a non-Earth-centric approach since the details of biological metabolic pathways are heavily shaped by adaptation to geochemical conditions over the planet's history. Creating metabolism-related organic detection objectives for Enceladus missions, therefore, requires consideration of how metabolic systems may operate differently on another world, while basing these speculations on observed Earth-specific microbial processes. In addition, advances in origin-of-life research can play a critical role in distinguishing between interpretations of any future organic detections on Enceladus, and the discovery of an extant prebiotic system would be a transformative astrobiological event in its own right.</p>","PeriodicalId":8645,"journal":{"name":"Astrobiology","volume":"24 3","pages":"328-338"},"PeriodicalIF":4.2,"publicationDate":"2024-03-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140179222","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"物理与天体物理","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
AstrobiologyPub Date : 2024-03-01DOI: 10.1089/ast.2023.0020
Noel Case, Nikki Johnston, Jay Nadeau
{"title":"Fluorescence Microscopy with Deep UV, Near UV, and Visible Excitation for <i>In Situ</i> Detection of Microorganisms.","authors":"Noel Case, Nikki Johnston, Jay Nadeau","doi":"10.1089/ast.2023.0020","DOIUrl":"10.1089/ast.2023.0020","url":null,"abstract":"<p><p>We report a simple, inexpensive design of a fluorescence microscope with light-emitting diode (LED) excitation for detection of labeled and unlabeled microorganisms in mineral substrates. The use of deep UV (DUV) excitation with visible emission requires no specialized optics or slides and can be implemented easily and inexpensively using an oblique illumination geometry. DUV excitation (<280 nm) is preferable to near UV (365 nm) for avoidance of mineral autofluorescence. When excited with DUV, unpigmented bacteria show two emission peaks: one in the near UV ∼320 nm, corresponding to proteins, and another peak in the blue to green range, corresponding to flavins and/or reduced nicotinamide adenine dinucleotide (NADH). Many commonly used dyes also show secondary excitation peaks in the DUV, with identical emission spectra and quantum yields as their primary peak. However, DUV fails to excite key biosignature molecules, especially chlorophyll in cyanobacteria. Visible excitation (violet to blue) also results in less mineral autofluorescence than near UV, and most autofluorescence in the minerals seen here is green, so that red dyes and red autofluorescence of chlorophyll and porphyrins are readily distinguished. The pairing of DUV and near UV or visible excitation, with emission across the visible, represents the most thorough approach to detection of labeled and unlabeled bacteria in soil and rock.</p>","PeriodicalId":8645,"journal":{"name":"Astrobiology","volume":"24 3","pages":"300-317"},"PeriodicalIF":4.2,"publicationDate":"2024-03-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10979697/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140179223","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"物理与天体物理","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
AstrobiologyPub Date : 2024-03-01DOI: 10.1089/ast.2021.0129
Micah J Schaible, Nadia Szeinbaum, G Ozan Bozdag, Luoth Chou, Natalie Grefenstette, Stephanie Colón-Santos, Laura E Rodriguez, M J Styczinski, Jennifer L Thweatt, Zoe R Todd, Alberto Vázquez-Salazar, Alyssa Adams, M N Araújo, Thiago Altair, Schuyler Borges, Dana Burton, José Alberto Campillo-Balderas, Eryn M Cangi, Tristan Caro, Enrico Catalano, Kimberly Chen, Peter L Conlin, Z S Cooper, Theresa M Fisher, Santiago Mestre Fos, Amanda Garcia, D M Glaser, Chester E Harman, Ninos Y Hermis, M Hooks, K Johnson-Finn, Owen Lehmer, Ricardo Hernández-Morales, Kynan H G Hughson, Rodrigo Jácome, Tony Z Jia, Jeffrey J Marlow, Jordan McKaig, Veronica Mierzejewski, Israel Muñoz-Velasco, Ceren Nural, Gina C Oliver, Petar I Penev, Chinmayee Govinda Raj, Tyler P Roche, Mary C Sabuda, George A Schaible, Serhat Sevgen, Pritvik Sinhadc, Luke H Steller, Kamil Stelmach, J Tarnas, Frank Tavares, Gareth Trubl, Monica Vidaurri, Lena Vincent, Jessica M Weber, Maggie Meiqi Weng, Regina L Wilpiszeki, Amber Young
{"title":"Chapter 1: The Astrobiology Primer 3.0.","authors":"Micah J Schaible, Nadia Szeinbaum, G Ozan Bozdag, Luoth Chou, Natalie Grefenstette, Stephanie Colón-Santos, Laura E Rodriguez, M J Styczinski, Jennifer L Thweatt, Zoe R Todd, Alberto Vázquez-Salazar, Alyssa Adams, M N Araújo, Thiago Altair, Schuyler Borges, Dana Burton, José Alberto Campillo-Balderas, Eryn M Cangi, Tristan Caro, Enrico Catalano, Kimberly Chen, Peter L Conlin, Z S Cooper, Theresa M Fisher, Santiago Mestre Fos, Amanda Garcia, D M Glaser, Chester E Harman, Ninos Y Hermis, M Hooks, K Johnson-Finn, Owen Lehmer, Ricardo Hernández-Morales, Kynan H G Hughson, Rodrigo Jácome, Tony Z Jia, Jeffrey J Marlow, Jordan McKaig, Veronica Mierzejewski, Israel Muñoz-Velasco, Ceren Nural, Gina C Oliver, Petar I Penev, Chinmayee Govinda Raj, Tyler P Roche, Mary C Sabuda, George A Schaible, Serhat Sevgen, Pritvik Sinhadc, Luke H Steller, Kamil Stelmach, J Tarnas, Frank Tavares, Gareth Trubl, Monica Vidaurri, Lena Vincent, Jessica M Weber, Maggie Meiqi Weng, Regina L Wilpiszeki, Amber Young","doi":"10.1089/ast.2021.0129","DOIUrl":"10.1089/ast.2021.0129","url":null,"abstract":"<p><p>The Astrobiology Primer 3.0 (ABP3.0) is a concise introduction to the field of astrobiology for students and others who are new to the field of astrobiology. It provides an entry into the broader materials in this supplementary issue of <i>Astrobiology</i> and an overview of the investigations and driving hypotheses that make up this interdisciplinary field. The content of this chapter was adapted from the other 10 articles in this supplementary issue and thus represents the contribution of all the authors who worked on these introductory articles. The content of this chapter is not exhaustive and represents the topics that the authors found to be the most important and compelling in a dynamic and changing field.</p>","PeriodicalId":8645,"journal":{"name":"Astrobiology","volume":"24 S1","pages":"S4-S39"},"PeriodicalIF":4.2,"publicationDate":"2024-03-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140157497","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"物理与天体物理","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
AstrobiologyPub Date : 2024-03-01DOI: 10.1089/ast.2021.0098
M J Styczinski, D M Glaser, M Hooks, T Z Jia, K Johnson-Finn, G A Schaible, M J Schaible
{"title":"Chapter 11: Astrobiology Education, Engagement, and Resources.","authors":"M J Styczinski, D M Glaser, M Hooks, T Z Jia, K Johnson-Finn, G A Schaible, M J Schaible","doi":"10.1089/ast.2021.0098","DOIUrl":"10.1089/ast.2021.0098","url":null,"abstract":"<p><p>Although astrobiology is a relatively new field of science, the questions it seeks to answer (<i>e.g.,</i> \"What is life?\" \"What does life require?\") have been investigated for millennia. In recent decades, formal programs dedicated specifically to the science of astrobiology have been organized at academic, governmental, and institutional scales. Constructing educational programs around this emerging science relies on input from broad expertise and backgrounds. Because of the interdisciplinary nature of this field, career pathways in astrobiology often begin in more specific fields such as astronomy, geology, or biology, and unlike many other sciences, typically involve substantial training outside one's primary discipline. The recent origin of astrobiology as a field of science has led to strong collaborations with education research in the development of astrobiology courses and offers a unique instructional laboratory for further pedagogical studies. This chapter is intended to support students, educators, and early career scientists by connecting them to materials and opportunities that the authors and colleagues have found advantageous. Annotated lists of relevant programs and resources are included as a series of appendices in the supplementary material.</p>","PeriodicalId":8645,"journal":{"name":"Astrobiology","volume":"24 S1","pages":"S216-S227"},"PeriodicalIF":4.2,"publicationDate":"2024-03-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140157499","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"物理与天体物理","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
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