Applied Microbiology and Biotechnology最新文献

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A novel conserved B-cell epitope in pB602L of African swine fever virus. 非洲猪瘟病毒 pB602L 中的新型保守 B 细胞表位。
IF 5 3区 生物学
Applied Microbiology and Biotechnology Pub Date : 2024-12-01 Epub Date: 2024-01-09 DOI: 10.1007/s00253-023-12921-6
Jinxing Song, Mengxiang Wang, Lei Zhou, Panpan Tian, Junru Sun, Zhuoya Sun, Chenyun Guo, Yanan Wu, Gaiping Zhang
{"title":"A novel conserved B-cell epitope in pB602L of African swine fever virus.","authors":"Jinxing Song, Mengxiang Wang, Lei Zhou, Panpan Tian, Junru Sun, Zhuoya Sun, Chenyun Guo, Yanan Wu, Gaiping Zhang","doi":"10.1007/s00253-023-12921-6","DOIUrl":"10.1007/s00253-023-12921-6","url":null,"abstract":"<p><p>African swine fever virus (ASFV) is a complex DNA virus and the only member of the Asfarviridae family. It causes high mortality and severe economic losses in pigs. The ASFV pB602L protein plays a key role in virus assembly and functions as a molecular chaperone of the major capsid protein p72. In addition, pB602L is an important target for the development of diagnostic tools for African swine fever (ASF) because it is a highly immunogenic antigen against ASFV. In this study, we expressed and purified ASFV pB602L and validated its immunogenicity in serum from naturally infected pigs with ASFV. Furthermore, we successfully generated an IgG2a κ subclass monoclonal antibody (mAb 7E7) against pB602L using hybridoma technology. Using western blot and immunofluorescence assays, mAb 7E7 specifically recognized the ASFV Pig/HLJ/2018/strain and eukaryotic recombinant ASFV pB602L protein in vitro. The <sup>474</sup>SKENLTPDE<sup>482</sup> epitope in the ASFV pB602L C-terminus was identified as the minimal linear epitope for mAb 7E7 binding, with dozens of truncated pB602l fragments characterized by western blot assay. We also showed that this antigenic epitope sequence has a high conservation and antigenic index. Our study contributes to improved vaccine and antiviral development and provides new insights into the serologic diagnosis of ASF. KEY POINTS: • We developed a monoclonal antibody against ASFV pB602L, which can specifically recognize the ASFV Pig/HLJ/2018/ strain. • This study found one novel conserved B-cell epitope <sup>474</sup>SKENLTPDE<sup>482</sup>. • In the 3D structure, <sup>474</sup>SKENLTPDE<sup>482</sup> is exposed on the surface of ASFV pB602L, forming a curved linear structure.</p>","PeriodicalId":8342,"journal":{"name":"Applied Microbiology and Biotechnology","volume":"108 1","pages":"78"},"PeriodicalIF":5.0,"publicationDate":"2024-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10776737/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"139401620","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Endolysin NC5 improves early cloxacillin treatment in a mouse model of Streptococcus uberis mastitis. 内溶解素 NC5 可改善小鼠模型中尤伯杯链球菌乳腺炎的早期氯唑西林治疗。
IF 5 3区 生物学
Applied Microbiology and Biotechnology Pub Date : 2024-12-01 Epub Date: 2024-01-10 DOI: 10.1007/s00253-023-12820-w
Niels Vander Elst, Julie Bellemans, Rob Lavigne, Yves Briers, Evelyne Meyer
{"title":"Endolysin NC5 improves early cloxacillin treatment in a mouse model of Streptococcus uberis mastitis.","authors":"Niels Vander Elst, Julie Bellemans, Rob Lavigne, Yves Briers, Evelyne Meyer","doi":"10.1007/s00253-023-12820-w","DOIUrl":"10.1007/s00253-023-12820-w","url":null,"abstract":"<p><p>Streptococcus uberis frequently causes bovine mastitis, an infectious udder disease with significant economic implications for dairy cows. Conventional antibiotics, such as cloxacillin, sometimes have limited success in eliminating S. uberis as a stand-alone therapy. To address this challenge, the study objective was to investigate the VersaTile engineered endolysin NC5 as a supplemental therapy to cloxacillin in a mouse model of bovine S. uberis mastitis. NC5 was previously selected based on its intracellular killing and biofilm eradicating activity. To deliver preclinical proof-of-concept of this supplemental strategy, lactating mice were intramammarily infected with a bovine S. uberis field isolate and subsequently treated with cloxacillin (30.0 μg) combined with either a low (23.5 μg) or high (235.0 μg) dose of NC5. An antibiotic monotherapy group, as well as placebo treatment, was included as controls. Two types of responders were identified: fast (n = 17), showing response after 4-h treatment, and slow (n = 10), exhibiting no clear response at 4 h post-treatment across all groups. The high-dose combination therapy in comparison with placebo treatment impacted the hallmarks of mastitis in the fast responders by reducing (i) the bacterial load 13,000-fold (4.11 ± 0.78 Δlog<sub>10</sub>; p < 0.001), (ii) neutrophil infiltration 5.7-fold (p > 0.05), and (iii) the key pro-inflammatory chemokine IL-8 13-fold (p < 0.01). These mastitis hallmarks typically followed a dose response dependent on the amount of endolysin added. The current in vivo study complements our in vitro data and provides preclinical proof-of-concept of NC5 as an adjunct to intramammary cloxacillin treatment. KEY POINTS: • Engineered endolysin NC5 was preclinically evaluated as add-on to cloxacillin treatment. • Two types of mice (slow and fast responding) were observed. • The add-on treatment decreased bacterial load, neutrophil influx, and pro-inflammatory mediators.</p>","PeriodicalId":8342,"journal":{"name":"Applied Microbiology and Biotechnology","volume":"108 1","pages":"118"},"PeriodicalIF":5.0,"publicationDate":"2024-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10781846/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"139416184","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Combined transcriptomic and pangenomic analyses guide metabolic amelioration to enhance tiancimycins production. 结合转录组学和泛基因组学分析,指导改进新陈代谢以提高替安霉素的产量。
IF 5 3区 生物学
Applied Microbiology and Biotechnology Pub Date : 2024-12-01 Epub Date: 2024-01-03 DOI: 10.1007/s00253-023-12937-y
Jing Lin, Yu Xiao, Huiming Liu, Die Gao, Yanwen Duan, Xiangcheng Zhu
{"title":"Combined transcriptomic and pangenomic analyses guide metabolic amelioration to enhance tiancimycins production.","authors":"Jing Lin, Yu Xiao, Huiming Liu, Die Gao, Yanwen Duan, Xiangcheng Zhu","doi":"10.1007/s00253-023-12937-y","DOIUrl":"10.1007/s00253-023-12937-y","url":null,"abstract":"<p><p>Exploration of high-yield mechanism is important for further titer improvement of valuable antibiotics, but how to achieve this goal is challenging. Tiancimycins (TNMs) are anthraquinone-fused enediynes with promising drug development potentials, but their prospective applications are limited by low titers. This work aimed to explore the intrinsic high-yield mechanism in previously obtained TNMs high-producing strain Streptomyces sp. CB03234-S for the further titer amelioration of TNMs. First, the typical ribosomal RpsL(K43N) mutation in CB03234-S was validated to be merely responsible for the streptomycin resistance but not the titer improvement of TNMs. Subsequently, the combined transcriptomic, pan-genomic and KEGG analyses revealed that the significant changes in the carbon and amino acid metabolisms could reinforce the metabolic fluxes of key CoA precursors, and thus prompted the overproduction of TNMs in CB03234-S. Moreover, fatty acid metabolism was considered to exert adverse effects on the biosynthesis of TNMs by shunting and reducing the accumulation of CoA precursors. Therefore, different combinations of relevant genes were respectively overexpressed in CB03234-S to strengthen fatty acid degradation. The resulting mutants all showed the enhanced production of TNMs. Among them, the overexpression of fadD, a key gene responsible for the first step of fatty acid degradation, achieved the highest 21.7 ± 1.1 mg/L TNMs with a 63.2% titer improvement. Our studies suggested that comprehensive bioinformatic analyses are effective to explore metabolic changes and guide rational metabolic reconstitution for further titer improvement of target products. KEY POINTS: • Comprehensive bioinformatic analyses effectively reveal primary metabolic changes. • Primary metabolic changes cause precursor enrichment to enhance TNMs production. • Strengthening of fatty acid degradation further improves the titer of TNMs.</p>","PeriodicalId":8342,"journal":{"name":"Applied Microbiology and Biotechnology","volume":"108 1","pages":"18"},"PeriodicalIF":5.0,"publicationDate":"2024-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"139085601","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Development of genetic markers in Yarrowia lipolytica. 开发脂肪溶解亚罗菌的遗传标记。
IF 5 3区 生物学
Applied Microbiology and Biotechnology Pub Date : 2024-12-01 Epub Date: 2024-01-03 DOI: 10.1007/s00253-023-12835-3
Yamin Zhu, Jianhui Liu, Lingxuan Sun, Mengmeng Liu, Qingsheng Qi, Jin Hou
{"title":"Development of genetic markers in Yarrowia lipolytica.","authors":"Yamin Zhu, Jianhui Liu, Lingxuan Sun, Mengmeng Liu, Qingsheng Qi, Jin Hou","doi":"10.1007/s00253-023-12835-3","DOIUrl":"10.1007/s00253-023-12835-3","url":null,"abstract":"<p><p>The oleaginous yeast Yarrowia lipolytica represents a potential microbial cell factory for the recombinant production of various valuable products. Currently, the commonly used selection markers for transformation in Y. lipolytica are limited, and successive genetic manipulations are often restricted by the number of available selection markers. In our study, we developed a dominant marker, dsdA, which encodes a D-serine deaminase for genetic manipulation in Y. lipolytica. In Y. lipolytica, this marker confers the ability to use D-serine as a nitrogen source. In addition, the selection conditions of several infrequently used dominant markers including bleoR (zeocin resistance), kanMX (G418 resistance), and guaB (mycophenolic acid resistance) were also analyzed. Our results demonstrated that these selection markers can be used for the genetic manipulation of Y. lipolytica and their selection conditions were different for various strains. Ultimately, the selection markers tested here will be useful to expand the genetic toolbox of Y. lipolytica. KEY POINTS: • The dsdA from Escherichia coli was developed as a dominant marker. • The applicability of several resistance markers in Y. lipolytica was determined. • We introduced the Cre/mutant lox system for marker recycling.</p>","PeriodicalId":8342,"journal":{"name":"Applied Microbiology and Biotechnology","volume":"108 1","pages":"14"},"PeriodicalIF":5.0,"publicationDate":"2024-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"139085605","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Fermentation of waste water from agar processing with Bacillus subtilis by metabolomic analysis. 利用代谢组学分析枯草芽孢杆菌发酵琼脂加工废水。
IF 5 3区 生物学
Applied Microbiology and Biotechnology Pub Date : 2024-12-01 Epub Date: 2024-01-03 DOI: 10.1007/s00253-023-12891-9
Yanyan Wu, Boyan Duan, Qiaoyan Lin, Yingying Liang, Xiping Du, Mingjing Zheng, Yanbing Zhu, Zedong Jiang, Qingbiao Li, Hui Ni, Zhipeng Li, Jinfang Chen
{"title":"Fermentation of waste water from agar processing with Bacillus subtilis by metabolomic analysis.","authors":"Yanyan Wu, Boyan Duan, Qiaoyan Lin, Yingying Liang, Xiping Du, Mingjing Zheng, Yanbing Zhu, Zedong Jiang, Qingbiao Li, Hui Ni, Zhipeng Li, Jinfang Chen","doi":"10.1007/s00253-023-12891-9","DOIUrl":"10.1007/s00253-023-12891-9","url":null,"abstract":"<p><p>Fungal infection has become a major threat to crop loss and affects food safety. The waste water from agar processing industries extraction has a number of active substances, which could be further transformed by microorganisms to synthesize antifungal active substances. In this study, Bacillus subtilis was used to ferment the waste water from agar processing industries extraction to analyze the antifungal activity of the fermentation broth on Alternaria alternata and Alternaria spp. Results showed that 25% of the fermentation broth was the most effective in inhibited A. alternata and Alternaria spp., with fungal inhibition rates of 99.9% and 96.1%, respectively, and a minimum inhibitory concentration (MIC) was 0.156 μg/mL. Metabolomic analysis showed that flavonoid polyphenols such as coniferyl aldehyde, glycycoumarin, glycitin, and procyanidin A1 may enhance the inhibitory activity against the two pathogenic fungal strains. Kyoto Encyclopedia of Genes and Genomes (KEGG) analysis showed that polyphenols involved in the biosynthesis pathways of isoflavonoid and phenylpropanoid were upregulated after fermentation. The laser confocal microscopy analyses and cell conductivity showed that the cytoplasm of fungi treated with fermentation broth was destroyed. This study provides a research basis for the development of new natural antifungal agents and rational use of seaweed agar waste. KEY POINTS: • Bacillus subtilis fermented waste water has antifungal activity • Bacillus subtilis could transform active substances in waste water • Waste water is a potential raw material for producing antifungal agents.</p>","PeriodicalId":8342,"journal":{"name":"Applied Microbiology and Biotechnology","volume":"108 1","pages":"15"},"PeriodicalIF":5.0,"publicationDate":"2024-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"139085620","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Response of Paenibacillus polymyxa SC2 to the stress of polymyxin B and a key ABC transporter YwjA involved. 多粘毛芽孢杆菌 SC2 对多粘菌素 B 胁迫的反应及关键 ABC 转运体 YwjA 的参与。
IF 5 3区 生物学
Applied Microbiology and Biotechnology Pub Date : 2024-12-01 Epub Date: 2024-01-03 DOI: 10.1007/s00253-023-12916-3
Hui Li, Wenhui E, Dongying Zhao, Haiyang Liu, Jian Pei, Binghai Du, Kai Liu, Xueming Zhu, Chengqiang Wang
{"title":"Response of Paenibacillus polymyxa SC2 to the stress of polymyxin B and a key ABC transporter YwjA involved.","authors":"Hui Li, Wenhui E, Dongying Zhao, Haiyang Liu, Jian Pei, Binghai Du, Kai Liu, Xueming Zhu, Chengqiang Wang","doi":"10.1007/s00253-023-12916-3","DOIUrl":"10.1007/s00253-023-12916-3","url":null,"abstract":"<p><p>Polymyxins are cationic peptide antibiotics and regarded as the \"final line of defense\" against multidrug-resistant bacterial infections. Meanwhile, some polymyxin-resistant strains and the corresponding resistance mechanisms have also been reported. However, the response of the polymyxin-producing strain Paenibacillus polymyxa to polymyxin stress remains unclear. The purpose of this study was to investigate the stress response of gram-positive P. polymyxa SC2 to polymyxin B and to identify functional genes involved in the stress response process. Polymyxin B treatment upregulated the expression of genes related to basal metabolism, transcriptional regulation, transport, and flagella formation and increased intracellular ROS levels, flagellar motility, and biofilm formation in P. polymyxa SC2. Adding magnesium, calcium, and iron alleviated the stress of polymyxin B on P. polymyxa SC2, furthermore, magnesium and calcium could improve the resistance of P. polymyxa SC2 to polymyxin B by promoting biofilm formation. Meanwhile, functional identification of differentially expressed genes indicated that an ABC superfamily transporter YwjA was involved in the stress response to polymyxin B of P. polymyxa SC2. This study provides an important reference for improving the resistance of P. polymyxa to polymyxins and increasing the yield of polymyxins. KEY POINTS: • Phenotypic responses of P. polymyxa to polymyxin B was performed and indicated by RNA-seq • Forming biofilm was a key strategy of P. polymyxa to alleviate polymyxin stress • ABC transporter YwjA was involved in the stress resistance of P. polymyxa to polymyxin B.</p>","PeriodicalId":8342,"journal":{"name":"Applied Microbiology and Biotechnology","volume":"108 1","pages":"17"},"PeriodicalIF":5.0,"publicationDate":"2024-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"139085673","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The application of bacteria-derived dehydrogenases and oxidases in the synthesis of gold nanoparticles. 细菌衍生的脱氢酶和氧化酶在金纳米粒子合成中的应用。
IF 5 3区 生物学
Applied Microbiology and Biotechnology Pub Date : 2024-12-01 Epub Date: 2024-01-06 DOI: 10.1007/s00253-023-12853-1
Lela Martinaga, Roland Ludwig, Iva Rezić, Martina Andlar, Dietmar Pum, Ana Vrsalović Presečki
{"title":"The application of bacteria-derived dehydrogenases and oxidases in the synthesis of gold nanoparticles.","authors":"Lela Martinaga, Roland Ludwig, Iva Rezić, Martina Andlar, Dietmar Pum, Ana Vrsalović Presečki","doi":"10.1007/s00253-023-12853-1","DOIUrl":"10.1007/s00253-023-12853-1","url":null,"abstract":"<p><p>In this work the green synthesis of gold nanoparticles (Au-NPs) using the oxidoreductive enzymes Myriococcum thermophilum cellobiose dehydrogenase (Mt CDH), Glomerella cingulata glucose dehydrogenase (Gc GDH), and Aspergillus niger glucose oxidase (An GOX)) as bioreductants was investigated. The influence of reaction conditions on the synthesis of Au-NPs was examined and optimised. The reaction kinetics and the influence of Au ions on the reaction rate were determined. Based on the kinetic study, the mechanism of Au-NP synthesis was proposed. The Au-NPs were characterized by UV-Vis spectroscopy and transmission electron microscopy (TEM). The surface plasmon resonance (SPR) absorption peaks of the Au-NPs synthesised with Mt CDH and Gc GDH were observed at 535 nm, indicating an average size of around 50 nm. According to the image analysis performed on a TEM micrograph, the Au-NPs synthesized with Gc GDH have a spherical shape with an average size of 2.83 and 6.63 nm after 24 and 48 h of the reaction, respectively. KEY POINTS: • The Au NPs were synthesised by the action of enzymes CDH and GDH. • The synthesis of Au-NPs by CDH is related to the oxidation of cellobiose. • The synthesis of Au-NPs by GDH was not driven by the reaction kinetic.</p>","PeriodicalId":8342,"journal":{"name":"Applied Microbiology and Biotechnology","volume":"108 1","pages":"62"},"PeriodicalIF":5.0,"publicationDate":"2024-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"139110722","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Characterization of Tau95 led to the identification of a four-subunit TFIIIC complex in trypanosomatid parasites. 通过对 Tau95 的特征描述,确定了锥虫寄生虫中的四亚基 TFIIIC 复合物。
IF 5 3区 生物学
Applied Microbiology and Biotechnology Pub Date : 2024-12-01 Epub Date: 2024-01-10 DOI: 10.1007/s00253-023-12903-8
Fabiola Mondragón-Rosas, Luis E Florencio-Martínez, Gino S Villa-Delavequia, Rebeca G Manning-Cela, Julio C Carrero, Tomás Nepomuceno-Mejía, Santiago Martínez-Calvillo
{"title":"Characterization of Tau95 led to the identification of a four-subunit TFIIIC complex in trypanosomatid parasites.","authors":"Fabiola Mondragón-Rosas, Luis E Florencio-Martínez, Gino S Villa-Delavequia, Rebeca G Manning-Cela, Julio C Carrero, Tomás Nepomuceno-Mejía, Santiago Martínez-Calvillo","doi":"10.1007/s00253-023-12903-8","DOIUrl":"10.1007/s00253-023-12903-8","url":null,"abstract":"<p><p>RNA polymerase III (RNAP III) synthetizes small essential non-coding RNA molecules such as tRNAs and 5S rRNA. In yeast and vertebrates, RNAP III needs general transcription factors TFIIIA, TFIIIB, and TFIIIC to initiate transcription. TFIIIC, composed of six subunits, binds to internal promoter elements in RNAP III-dependent genes. Limited information is available about RNAP III transcription in the trypanosomatid protozoa Trypanosoma brucei and Leishmania major, which diverged early from the eukaryotic lineage. Analyses of the first published draft of the trypanosomatid genome sequences failed to recognize orthologs of any of the TFIIIC subunits, suggesting that this transcription factor is absent in these parasites. However, a putative TFIIIC subunit was recently annotated in the databases. Here we characterize this subunit in T. brucei and L. major and demonstrate that it corresponds to Tau95. In silico analyses showed that both proteins possess the typical Tau95 sequences: the DNA binding region and the dimerization domain. As anticipated for a transcription factor, Tau95 localized to the nucleus in insect forms of both parasites. Chromatin immunoprecipitation (ChIP) assays demonstrated that Tau95 binds to tRNA and U2 snRNA genes in T. brucei. Remarkably, by performing tandem affinity purifications we identified orthologs of TFIIIC subunits Tau55, Tau131, and Tau138 in T. brucei and L. major. Thus, contrary to what was assumed, trypanosomatid parasites do possess a TFIIIC complex. Other putative interacting partners of Tau95 were identified in T. brucei and L. major. KEY POINTS: • A four-subunit TFIIIC complex is present in T. brucei and L. major • TbTau95 associates with tRNA and U2 snRNA genes • Putative interacting partners of Tau95 might include some RNAP II regulators.</p>","PeriodicalId":8342,"journal":{"name":"Applied Microbiology and Biotechnology","volume":"108 1","pages":"109"},"PeriodicalIF":5.0,"publicationDate":"2024-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10781861/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"139416181","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Novel recombinant aminoacylase from Paraburkholderia monticola capable of N-acyl-amino acid synthesis. 能合成 N-酰基氨基酸的新型重组氨基酰化酶。
IF 5 3区 生物学
Applied Microbiology and Biotechnology Pub Date : 2024-12-01 Epub Date: 2024-01-10 DOI: 10.1007/s00253-023-12868-8
Gerrit Haeger, Tristan Jolmes, Sven Oyen, Karl-Erich Jaeger, Johannes Bongaerts, Ulrich Schörken, Petra Siegert
{"title":"Novel recombinant aminoacylase from Paraburkholderia monticola capable of N-acyl-amino acid synthesis.","authors":"Gerrit Haeger, Tristan Jolmes, Sven Oyen, Karl-Erich Jaeger, Johannes Bongaerts, Ulrich Schörken, Petra Siegert","doi":"10.1007/s00253-023-12868-8","DOIUrl":"10.1007/s00253-023-12868-8","url":null,"abstract":"<p><p>N-Acyl-amino acids can act as mild biobased surfactants, which are used, e.g., in baby shampoos. However, their chemical synthesis needs acyl chlorides and does not meet sustainability criteria. Thus, the identification of biocatalysts to develop greener synthesis routes is desirable. We describe a novel aminoacylase from Paraburkholderia monticola DSM 100849 (PmAcy) which was identified, cloned, and evaluated for its N-acyl-amino acid synthesis potential. Soluble protein was obtained by expression in lactose autoinduction medium and co-expression of molecular chaperones GroEL/S. Strep-tag affinity purification enriched the enzyme 16-fold and yielded 15 mg pure enzyme from 100 mL of culture. Biochemical characterization revealed that PmAcy possesses beneficial traits for industrial application like high temperature and pH-stability. A heat activation of PmAcy was observed upon incubation at temperatures up to 80 °C. Hydrolytic activity of PmAcy was detected with several N-acyl-amino acids as substrates and exhibited the highest conversion rate of 773 U/mg with N-lauroyl-L-alanine at 75 °C. The enzyme preferred long-chain acyl-amino-acids and displayed hardly any activity with acetyl-amino acids. PmAcy was also capable of N-acyl-amino acid synthesis with good conversion rates. The best synthesis results were obtained with the cationic L-amino acids L-arginine and L-lysine as well as with L-leucine and L-phenylalanine. Exemplarily, L-phenylalanine was acylated with fatty acids of chain lengths from C8 to C18 with conversion rates of up to 75%. N-lauroyl-L-phenylalanine was purified by precipitation, and the structure of the reaction product was verified by LC-MS and NMR. KEY POINTS: • A novel aminoacylase from Paraburkholderia monticola was cloned, expressed in E. coli and purified. • The enzyme PmAcy exhibits exceptional temperature and pH stability and a broad substrate spectrum. • Synthesis of acyl amino acids was achieved in good yields.</p>","PeriodicalId":8342,"journal":{"name":"Applied Microbiology and Biotechnology","volume":"108 1","pages":"93"},"PeriodicalIF":5.0,"publicationDate":"2024-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10781821/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"139416187","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
AMWEst, a new thermostable and detergent-tolerant esterase retrieved from the Albian aquifer. AMWEst,一种从阿尔卑斯含水层中提取的新型耐热、耐洗涤剂酯酶。
IF 5 3区 生物学
Applied Microbiology and Biotechnology Pub Date : 2024-12-01 Epub Date: 2024-01-10 DOI: 10.1007/s00253-023-12844-2
Moussa Adjeroud, Mouloud Kecha, Juan-José Escuder-Rodríguez, Manuel Becerra, María-Isabel González-Siso
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