Annual review of plant biology最新文献_第4页

Conserving Evolutionary Potential: Combining Landscape Genomics with Established Methods to Inform Plant Conservation 保护进化潜力：将景观基因组学与现有方法相结合，为植物保护提供信息

IF 23.9 1区生物学

Annual review of plant biology Pub Date : 2024-04-10 DOI: 10.1146/annurev-arplant-070523-044239

Sally N. Aitken, Rebecca Jordan, Hayley R. Tumas

{"title":"Conserving Evolutionary Potential: Combining Landscape Genomics with Established Methods to Inform Plant Conservation","authors":"Sally N. Aitken, Rebecca Jordan, Hayley R. Tumas","doi":"10.1146/annurev-arplant-070523-044239","DOIUrl":"https://doi.org/10.1146/annurev-arplant-070523-044239","url":null,"abstract":"Biodiversity conservation requires conserving evolutionary potential—the capacity for wild populations to adapt. Understanding genetic diversity and evolutionary dynamics is critical for informing conservation decisions that enhance adaptability and persistence under environmental change. We review how emerging landscape genomic methods provide plant conservation programs with insights into evolutionary dynamics, including local adaptation and its environmental drivers. Landscape genomic approaches that explore relationships between genomic variation and environments complement rather than replace established population genomic and common garden approaches for assessing adaptive phenotypic variation, population structure, gene flow, and demography. Collectively, these approaches inform conservation actions, including genetic rescue, maladaptation prediction, and assisted gene flow. The greatest on-the-ground impacts from such studies will be realized when conservation practitioners are actively engaged in research and monitoring. Understanding the evolutionary dynamics shaping the genetic diversity of wild plant populations will inform plant conservation decisions that enhance the adaptability and persistence of species in an uncertain future.","PeriodicalId":8335,"journal":{"name":"Annual review of plant biology","volume":"2 1","pages":""},"PeriodicalIF":23.9,"publicationDate":"2024-04-10","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140570572","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

引用次数: 0

An RNA World. RNA世界。

IF 23.9 1区生物学

Annual review of plant biology Pub Date : 2023-05-22 DOI: 10.1146/annurev-arplant-070622-021021

David C Baulcombe

引用次数: 2

Replicated Evolution in Plants. 植物的复制进化。

IF 23.9 1区生物学

Annual review of plant biology Pub Date : 2023-05-22 DOI: 10.1146/annurev-arplant-071221-090809

Maddie E James, Tim Brodribb, Ian J Wright, Loren H Rieseberg, Daniel Ortiz-Barrientos

引用次数: 8

Temperature Sensing in Plants. 植物的温度感应。

IF 23.9 1区生物学

Annual review of plant biology Pub Date : 2023-05-22 DOI: 10.1146/annurev-arplant-102820-102235

Sandra M Kerbler, Philip A Wigge

引用次数: 7

Salt-Tolerant Crops: Time to Deliver. 耐盐作物:交付时间。

IF 23.9 1区生物学

Annual review of plant biology Pub Date : 2023-05-22 DOI: 10.1146/annurev-arplant-061422-104322

Vanessa Melino, Mark Tester

引用次数: 13

Optogenetic Methods in Plant Biology. 植物生物学中的光遗传学方法。

IF 23.9 1区生物学

Annual review of plant biology Pub Date : 2023-05-22 DOI: 10.1146/annurev-arplant-071122-094840

Kai R Konrad, Shiqiang Gao, Matias D Zurbriggen, Georg Nagel

引用次数: 2

The Diversity and Functions of Plant RNA Modifications: What We Know and Where We Go from Here. 植物RNA修饰的多样性和功能:我们所知道的和我们从这里走到哪里。

IF 23.9 1区生物学

Annual review of plant biology Pub Date : 2023-05-22 DOI: 10.1146/annurev-arplant-071122-085813

Bishwas Sharma, Wil Prall, Garima Bhatia, Brian D Gregory

{"title":"The Diversity and Functions of Plant RNA Modifications: What We Know and Where We Go from Here.","authors":"Bishwas Sharma, Wil Prall, Garima Bhatia, Brian D Gregory","doi":"10.1146/annurev-arplant-071122-085813","DOIUrl":"https://doi.org/10.1146/annurev-arplant-071122-085813","url":null,"abstract":"Since the discovery of the first ribonucleic acid (RNA) modifications in transfer RNAs (tRNAs) and ribosomal RNAs (rRNAs), scientists have been on a quest to decipher the identities and functions of RNA modifications in biological systems. The last decade has seen monumental growth in the number of studies that have characterized and assessed the functionalities of RNA modifications in the field of plant biology. Owing to these studies, we now categorize RNA modifications based on their chemical nature and the RNA on which they are found, as well as the array of proteins that are involved in the processes that add, read, and remove them from an RNA molecule. Beyond their identity, another key piece of the puzzle is the functional significance of the various types of RNA modifications. Here, we shed light on recent studies that help establish our current understanding of the diversity of RNA modifications found in plant transcriptomes and the functions they play at both the molecular (e.g., RNA stability, translation, and transport) and organismal (e.g., stress response and development) levels. Finally, we consider the key research questions related to plant gene expression and biology in general and highlight developments in various technologies that are driving our insights forward in this research area.","PeriodicalId":8335,"journal":{"name":"Annual review of plant biology","volume":"74 ","pages":"53-85"},"PeriodicalIF":23.9,"publicationDate":"2023-05-22","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9517940","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

引用次数: 2

Decoding the Auxin Matrix: Auxin Biology Through the Eye of the Computer. 解码生长素矩阵:通过计算机之眼的生长素生物学。

IF 23.9 1区生物学

Annual review of plant biology Pub Date : 2023-05-22 DOI: 10.1146/annurev-arplant-102720-033523

Raquel Martin-Arevalillo, Teva Vernoux

引用次数: 2

Proximity Labeling in Plants. 植物中的邻近标签。

IF 23.9 1区生物学

Annual review of plant biology Pub Date : 2023-05-22 Epub Date: 2023-02-28 DOI: 10.1146/annurev-arplant-070522-052132

Shou-Ling Xu, Ruben Shrestha, Sumudu S Karunadasa, Pei-Qiao Xie

{"title":"Proximity Labeling in Plants.","authors":"Shou-Ling Xu, Ruben Shrestha, Sumudu S Karunadasa, Pei-Qiao Xie","doi":"10.1146/annurev-arplant-070522-052132","DOIUrl":"10.1146/annurev-arplant-070522-052132","url":null,"abstract":"Proteins are workhorses in the cell; they form stable and more often dynamic, transient protein-protein interactions, assemblies, and networks and have an intimate interplay with DNA and RNA. These network interactions underlie fundamental biological processes and play essential roles in cellular function. The proximity-dependent biotinylation labeling approach combined with mass spectrometry (PL-MS) has recently emerged as a powerful technique to dissect the complex cellular network at the molecular level. In PL-MS, by fusing a genetically encoded proximity-labeling (PL) enzyme to a protein or a localization signal peptide, the enzyme is targeted to a protein complex of interest or to an organelle, allowing labeling of proximity proteins within a zoom radius. These biotinylated proteins can then be captured by streptavidin beads and identified and quantified by mass spectrometry. Recently engineered PL enzymes such as TurboID have a much-improved enzymatic activity, enabling spatiotemporal mapping with a dramatically increased signal-to-noise ratio. PL-MS has revolutionized the way we perform proteomics by overcoming several hurdles imposed by traditional technology, such as biochemical fractionation and affinity purification mass spectrometry. In this review, we focus on biotin ligase-based PL-MS applications that have been, or are likely to be, adopted by the plant field. We discuss the experimental designs and review the different choices for engineered biotin ligases, enrichment, and quantification strategies. Lastly, we review the validation and discuss future perspectives.","PeriodicalId":8335,"journal":{"name":"Annual review of plant biology","volume":"74 ","pages":"285-312"},"PeriodicalIF":23.9,"publicationDate":"2023-05-22","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10576617/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9514866","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

引用次数: 4

BAHD Company: The Ever-Expanding Roles of the BAHD Acyltransferase Gene Family in Plants. BAHD公司:BAHD酰基转移酶基因家族在植物中的作用不断扩大。

IF 23.9 1区生物学

Annual review of plant biology Pub Date : 2023-05-22 DOI: 10.1146/annurev-arplant-062922-050122

Gaurav Moghe, Lars H Kruse, Maike Petersen, Federico Scossa, Alisdair R Fernie, Emmanuel Gaquerel, John C D'Auria

{"title":"BAHD Company: The Ever-Expanding Roles of the BAHD Acyltransferase Gene Family in Plants.","authors":"Gaurav Moghe, Lars H Kruse, Maike Petersen, Federico Scossa, Alisdair R Fernie, Emmanuel Gaquerel, John C D'Auria","doi":"10.1146/annurev-arplant-062922-050122","DOIUrl":"https://doi.org/10.1146/annurev-arplant-062922-050122","url":null,"abstract":"Plants' ability to chemically modify core structures of specialized metabolites is the main reason why the plant kingdom contains such a wide and rich array of diverse compounds. One of the most important types of chemical modifications of small molecules is the addition of an acyl moiety to produce esters and amides. Large-scale phylogenomics analyses have shown that the enzymes that perform acyl transfer reactions on the myriad small molecules synthesized by plants belong to only a few gene families. This review is focused on describing the biochemistry, evolutionary origins, and chemical ecology implications of one of these families-the BAHD acyltransferases. The growth of advanced metabolomic studies coupled with next-generation sequencing of diverse plant species has confirmed that the BAHD family plays critical roles in modifying nearly all known classes of specialized metabolites. The current and future outlook for research on BAHDs includes expanding their roles in synthetic biology and metabolic engineering.","PeriodicalId":8335,"journal":{"name":"Annual review of plant biology","volume":"74 ","pages":"165-194"},"PeriodicalIF":23.9,"publicationDate":"2023-05-22","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9514298","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

引用次数: 5