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Annual review of plant biology最新文献

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Target of Rapamycin (TOR): A Master Regulator in Plant Growth, Development, and Stress Responses. 雷帕霉素靶点（TOR）：植物生长、发育和胁迫反应的主要调控因子。
IF 26.5 1区 生物学
Annual review of plant biology Pub Date : 2025-05-01 Epub Date: 2025-02-14 DOI: 10.1146/annurev-arplant-083123-050311
Yanlin Liu, Jun Hu, Xiaoli Duan, Wenlong Ding, Menglan Xu, Yan Xiong
{"title":"Target of Rapamycin (TOR): A Master Regulator in Plant Growth, Development, and Stress Responses.","authors":"Yanlin Liu, Jun Hu, Xiaoli Duan, Wenlong Ding, Menglan Xu, Yan Xiong","doi":"10.1146/annurev-arplant-083123-050311","DOIUrl":"10.1146/annurev-arplant-083123-050311","url":null,"abstract":"<p><p>The target of rapamycin (TOR) is a central regulator of growth, development, and stress adaptation in plants. This review delves into the molecular intricacies of TOR signaling, highlighting its conservation and specificity across eukaryotic lineages. We explore the molecular architecture of TOR complexes, their regulation by a myriad of upstream signals, and their consequential impacts on plant physiology. The roles of TOR in orchestrating nutrient sensing, hormonal cues, and environmental signals are highlighted, illustrating its pivotal function in modulating plant growth and development. Furthermore, we examine the impact of TOR on plant responses to various biotic and abiotic stresses, underscoring its potential as a target for agricultural improvements. This synthesis of current knowledge on plant TOR signaling sheds light on the complex interplay between growth promotion and stress adaptation, offering a foundation for future research and applications in plant biology.</p>","PeriodicalId":8335,"journal":{"name":"Annual review of plant biology","volume":" ","pages":"341-371"},"PeriodicalIF":26.5,"publicationDate":"2025-05-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143424515","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Nitrate Sensing and Signaling in Plants: Comparative Insights and Nutritional Interactions. 植物的硝酸盐感知和信号传导：比较见解和营养相互作用。
IF 26.4 1区 生物学
Annual review of plant biology Pub Date : 2025-05-01 DOI: 10.1146/annurev-arplant-083123-053039
Sandrine Ruffel, Jorge Del Rosario, Benoît Lacombe, Hatem Rouached, Rodrigo A Gutiérrez, Gloria M Coruzzi, Gabriel Krouk
{"title":"Nitrate Sensing and Signaling in Plants: Comparative Insights and Nutritional Interactions.","authors":"Sandrine Ruffel, Jorge Del Rosario, Benoît Lacombe, Hatem Rouached, Rodrigo A Gutiérrez, Gloria M Coruzzi, Gabriel Krouk","doi":"10.1146/annurev-arplant-083123-053039","DOIUrl":"10.1146/annurev-arplant-083123-053039","url":null,"abstract":"<p><p>Plant nitrogen nutrition is an essential and energy-costly component of terrestrial food chains. Understanding nitrate sensing in plants can lead to improved crop yields and nutrient use efficiency, directly impacting food security and agricultural sustainability. Herein, we review and present a comprehensive framework for understanding nitrate sensing in plants, integrating molecular, genetic, and physiological aspects. We begin by detailing the primary nitrate response and nitrate starvation response, which are central to the plant's ability to sense and respond to nitrate availability. We then explore the intricate interactions between nitrate signaling and other nutritional pathways such as those for carbon, phosphorus, potassium, and sulfur assimilation and reactive oxygen species (ROS) handling, and how it unfolds in long-distance systemic communication between roots and shoots. Finally, evolutionary insights are provided by comparing nitrate-sensing mechanisms across different plant species as well as Bacteria, Archaea, Chlorophyta, Charophyta (algae), and Fungi, revealing how these mechanisms may have evolved in diverse ecological niches. This review not only provides a framework to project our present and future understanding of plant nitrate and nitrogen nutrition but also offers potential strategies for improving nutrient use efficiency in crops through genetic and biotechnological interventions.</p>","PeriodicalId":8335,"journal":{"name":"Annual review of plant biology","volume":"76 1","pages":"25-52"},"PeriodicalIF":26.4,"publicationDate":"2025-05-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144109364","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Centrophilic Retrotransposons of Plant Genomes. 植物基因组的亲中心反转录转座子。
IF 26.5 1区 生物学
Annual review of plant biology Pub Date : 2025-05-01 Epub Date: 2025-02-14 DOI: 10.1146/annurev-arplant-083123-082220
Alexandros Bousios, Tetsuji Kakutani, Ian R Henderson
{"title":"Centrophilic Retrotransposons of Plant Genomes.","authors":"Alexandros Bousios, Tetsuji Kakutani, Ian R Henderson","doi":"10.1146/annurev-arplant-083123-082220","DOIUrl":"10.1146/annurev-arplant-083123-082220","url":null,"abstract":"<p><p>The centromeres of eukaryotic chromosomes are required to load CENH3/CENP-A variant nucleosomes and the kinetochore complex, which connects to spindle microtubules during cell division. Despite their conserved function, plant centromeres show rapid sequence evolution within and between species and a range of monocentric, holocentric, and polymetacentric architectures, which vary in kinetochore numbers and spacing. Plant centromeres are commonly composed of tandem satellite repeat arrays, which are invaded by specific families of centrophilic retrotransposons, whereas in some species the entire centromere is composed of such retrotransposons. We review the diversity of plant centrophilic retrotransposons and their mechanisms of integration, together with how epigenetic information and small RNAs control their proliferation. We discuss models for rapid centromere sequence evolution and speculate on the roles that centrophilic retrotransposons may play in centromere dynamics. We focus on plants but draw comparisons with animal and fungal centromeric transposons to highlight conserved and divergent themes across the eukaryotes.</p>","PeriodicalId":8335,"journal":{"name":"Annual review of plant biology","volume":" ","pages":"579-604"},"PeriodicalIF":26.5,"publicationDate":"2025-05-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143424572","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Planting Genomes in the Wild: Arabidopsis from Genetics History to the Ecology and Evolutionary Genomics Era. 野生种植基因组：拟南芥从遗传学历史到生态学和进化基因组学时代。
IF 26.5 1区 生物学
Annual review of plant biology Pub Date : 2025-05-01 Epub Date: 2025-02-19 DOI: 10.1146/annurev-arplant-071123-095146
Laura Leventhal, Megan Ruffley, Moises Exposito-Alonso
{"title":"Planting Genomes in the Wild: <i>Arabidopsis</i> from Genetics History to the Ecology and Evolutionary Genomics Era.","authors":"Laura Leventhal, Megan Ruffley, Moises Exposito-Alonso","doi":"10.1146/annurev-arplant-071123-095146","DOIUrl":"10.1146/annurev-arplant-071123-095146","url":null,"abstract":"<p><p>The genetics model system <i>Arabidopsis thaliana</i> (L.) Heynh. lives across a vast geographic range with contrasting climates, in response to which it has evolved diverse life histories and phenotypic adaptations. In the last decade, the cataloging of worldwide populations, DNA sequencing of whole genomes, and conducting of outdoor field experiments have transformed it into a powerful evolutionary ecology system to understand the genomic basis of adaptation. Here, we summarize new insights on <i>Arabidopsis</i> following the coordinated efforts of the 1001 Genomes Project, the latest reconstruction of biogeographic and demographic history, and the systematic genomic mapping of trait natural variation through 15 years of genome-wide association studies. We then put this in the context of local adaptation across climates by summarizing insights from 73 <i>Arabidopsis</i> outdoor common garden experiments conducted to date. We conclude by highlighting how molecular and genomic knowledge of adaptation can help us to understand species' (mal)adaptation under ongoing climate change.</p>","PeriodicalId":8335,"journal":{"name":"Annual review of plant biology","volume":" ","pages":"605-635"},"PeriodicalIF":26.5,"publicationDate":"2025-05-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143456620","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Plant Peptide Ligands as Temporal and Spatial Regulators. 植物多肽配体的时空调节作用。
IF 26.5 1区 生物学
Annual review of plant biology Pub Date : 2025-05-01 Epub Date: 2025-03-10 DOI: 10.1146/annurev-arplant-070324-041348
Vilde O Lalun, Melinka A Butenko
{"title":"Plant Peptide Ligands as Temporal and Spatial Regulators.","authors":"Vilde O Lalun, Melinka A Butenko","doi":"10.1146/annurev-arplant-070324-041348","DOIUrl":"10.1146/annurev-arplant-070324-041348","url":null,"abstract":"<p><p>Throughout the life cycle of a plant, numerous responses need to be carefully regulated to ensure proper development and appropriate responses to external stimuli, and plant hormones play a crucial role in this regulation. Since the early 1990s, there has been expansive research elucidating the central role that peptide ligands play as intrinsic short- and long-distance communicators during development and as regulators of phenotypic plasticity. In this review, we focus on recently discovered mechanisms that ensure correct spatial and temporal cellular responses triggered by peptide ligands and provide examples of how peptide processing proteins and apoplastic conditions can regulate peptide activity in a timely manner.</p>","PeriodicalId":8335,"journal":{"name":"Annual review of plant biology","volume":" ","pages":"229-253"},"PeriodicalIF":26.5,"publicationDate":"2025-05-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143596190","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Nucleotide Sugar Transporters: Orchestrating Luminal Glycosylation in Plants. 核苷酸糖转运蛋白：协调植物腔内糖基化。
IF 26.5 1区 生物学
Annual review of plant biology Pub Date : 2025-05-01 Epub Date: 2025-03-04 DOI: 10.1146/annurev-arplant-083123-075017
Berit Ebert, Ariel Orellana
{"title":"Nucleotide Sugar Transporters: Orchestrating Luminal Glycosylation in Plants.","authors":"Berit Ebert, Ariel Orellana","doi":"10.1146/annurev-arplant-083123-075017","DOIUrl":"10.1146/annurev-arplant-083123-075017","url":null,"abstract":"<p><p>Eukaryotic glycobiology revolves around nucleotide sugar transporters (NSTs), which are critical for glycan biosynthesis in the Golgi apparatus and endoplasmic reticulum. In plants, NSTs share similarities with triose phosphate translocators (TPTs) and together form the NST/TPT superfamily. Major research efforts over the last decades have led to the biochemical characterization of several of these transporters and addressed their role in cell wall polysaccharide and glycoconjugate biosynthesis, revealing precise substrate specificity and function. While recent insights gained from NST and TPT crystal structures promise to unravel the molecular mechanisms governing these membrane proteins, their regulation and dynamic behavior remain enigmatic. Likewise, many uncharacterized and orphan NSTs pose exciting questions about the biology of the endomembrane system. We discuss the progress in this active research area and stimulate consideration for the intriguing outstanding questions with a view to establish a foundation for applications in plant engineering and biopolymer production.</p>","PeriodicalId":8335,"journal":{"name":"Annual review of plant biology","volume":" ","pages":"53-83"},"PeriodicalIF":26.5,"publicationDate":"2025-05-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143555728","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Systems Biology of Streptophyte Cell Evolution. 链藻细胞进化的系统生物学。
IF 26.5 1区 生物学
Annual review of plant biology Pub Date : 2025-05-01 Epub Date: 2025-01-16 DOI: 10.1146/annurev-arplant-083123-060254
Elisa S Goldbecker, Jan de Vries
{"title":"Systems Biology of Streptophyte Cell Evolution.","authors":"Elisa S Goldbecker, Jan de Vries","doi":"10.1146/annurev-arplant-083123-060254","DOIUrl":"10.1146/annurev-arplant-083123-060254","url":null,"abstract":"<p><p>More than 500 million years ago, a streptophyte algal population established a foothold on land and started terraforming Earth through an unprecedented radiation. This event is called plant terrestrialization and yielded the Embryophyta. Recent advancements in the field of plant evolutionary developmental biology (evo-devo) have propelled our knowledge of the closest algal relatives of land plants, the zygnematophytes, highlighting that several aspects of plant cell biology are shared between embryophytes and their sister lineage. High-throughput exploration determined that routes of signaling cascades, biosynthetic pathways, and molecular physiology predate plant terrestrialization. But how do they assemble into biological programs, and what do these programs tell us about the principal functions of the streptophyte cell? Here, we make the case that streptophyte algae are unique organisms for understanding the systems biology of the streptophyte cell, informing on not only the origin of embryophytes but also their fundamental biology.</p>","PeriodicalId":8335,"journal":{"name":"Annual review of plant biology","volume":" ","pages":"493-522"},"PeriodicalIF":26.5,"publicationDate":"2025-05-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142998892","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Autophagy in Plant Health and Disease. 植物健康与疾病中的自噬
IF 26.5 1区 生物学
Annual review of plant biology Pub Date : 2025-05-01 Epub Date: 2025-01-22 DOI: 10.1146/annurev-arplant-060324-094912
Angelina S Gross, Margot Raffeiner, Yonglun Zeng, Suayib Üstün, Yasin Dagdas
{"title":"Autophagy in Plant Health and Disease.","authors":"Angelina S Gross, Margot Raffeiner, Yonglun Zeng, Suayib Üstün, Yasin Dagdas","doi":"10.1146/annurev-arplant-060324-094912","DOIUrl":"10.1146/annurev-arplant-060324-094912","url":null,"abstract":"<p><p>Autophagy has emerged as an essential quality control pathway in plants that selectively and rapidly removes damaged or unwanted cellular components to maintain cellular homeostasis. It can recycle a broad range of cargoes, including entire organelles, protein aggregates, and even invading microbes. It involves the de novo biogenesis of a new cellular compartment, making it intimately linked to endomembrane trafficking pathways. Autophagy is induced by a wide range of biotic and abiotic stress factors, and autophagy mutant plants are highly sensitive to stress, making it an attractive target for improving plant stress resilience. Here, we critically discuss recent discoveries related to plant autophagy and highlight open questions and future research areas.</p>","PeriodicalId":8335,"journal":{"name":"Annual review of plant biology","volume":" ","pages":"197-227"},"PeriodicalIF":26.5,"publicationDate":"2025-05-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143021623","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
A Way to Interact with the World: Complex and Diverse Spatiotemporal Cell Wall Thickenings in Plant Roots. 一种与世界互动的方式：植物根系中复杂多样的时空细胞壁增厚。
IF 26.5 1区 生物学
Annual review of plant biology Pub Date : 2025-05-01 Epub Date: 2025-01-02 DOI: 10.1146/annurev-arplant-102820-112451
Alex Cantó-Pastor, Concepcion Manzano, Siobhán M Brady
{"title":"A Way to Interact with the World: Complex and Diverse Spatiotemporal Cell Wall Thickenings in Plant Roots.","authors":"Alex Cantó-Pastor, Concepcion Manzano, Siobhán M Brady","doi":"10.1146/annurev-arplant-102820-112451","DOIUrl":"10.1146/annurev-arplant-102820-112451","url":null,"abstract":"<p><p>Plant cells are defined by their walls, which, in addition to providing structural support and shape, are an integral component of the nonliving extracellular space called the apoplast. Cell wall thickenings are present in many different root cell types. They come in a variety of simple and more complex structures with varying composition of lignin and suberin and can change in response to environmental stressors. The majority of these root cell wall thickenings and cell types that contain them are absent in the model plant <i>Arabidopsis thaliana</i> despite being present in most plant species. As a result, we know very little regarding their developmental control and function. Increasing evidence suggests that these structures are critical for responding to and facilitating adaptation to a wide array of stresses that a plant root experiences. These structures function in blocking apoplastic transport, oxygen, and water loss and enhancing root penetrative strength. In this review, we describe the most common types of cell wall thickenings in the outer cell types of plant roots-the velamen, exodermal thickenings, the sclerenchyma, and phi thickenings. Their cell type dependency, morphology, composition, environmental responsiveness, and genetic control in vascular plants are discussed, as well as their potential to generate more stress-resilient roots in the face of a changing climate.</p>","PeriodicalId":8335,"journal":{"name":"Annual review of plant biology","volume":" ","pages":"433-466"},"PeriodicalIF":26.5,"publicationDate":"2025-05-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142920350","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Rational Redomestication for Future Agriculture. 未来农业的理性归化。
IF 26.5 1区 生物学
Annual review of plant biology Pub Date : 2025-05-01 Epub Date: 2025-02-03 DOI: 10.1146/annurev-arplant-083123-064726
Nan Wang, Hongbo Li, Sanwen Huang
{"title":"Rational Redomestication for Future Agriculture.","authors":"Nan Wang, Hongbo Li, Sanwen Huang","doi":"10.1146/annurev-arplant-083123-064726","DOIUrl":"10.1146/annurev-arplant-083123-064726","url":null,"abstract":"<p><p>Modern agricultural practices rely on high-input, intensive cultivation of a few crop varieties with limited diversity, increasing the vulnerability of our agricultural systems to biotic and abiotic stresses and the effects of climate changes. This necessitates a paradigm shift toward a more sustainable agricultural model to ensure a stable and dependable food supply for the burgeoning global population. Leveraging knowledge from crop biology, genetics, and genomics, alongside state-of-the-art biotechnologies, rational redomestication has emerged as a targeted and knowledge-driven approach to crop innovation. This strategy aims to broaden the range of species available for agriculture, restore lost genetic diversity, and further improve existing domesticated crops. We summarize how diverse plants can be exploited in rational redomestication endeavors, including wild species, underutilized plants, and domesticated crops. Equipped with rational redomestication approaches, we propose different strategies to empower the fast and slow breeding systems distinguished by plant reproduction systems.</p>","PeriodicalId":8335,"journal":{"name":"Annual review of plant biology","volume":" ","pages":"637-662"},"PeriodicalIF":26.5,"publicationDate":"2025-05-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143122047","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
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