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Annual review of plant biology最新文献

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Plant Hormone Transport and Localization: Signaling Molecules on the Move. 植物激素运输和定位:运动中的信号分子。
IF 23.9 1区 生物学
Annual review of plant biology Pub Date : 2023-05-22 DOI: 10.1146/annurev-arplant-070722-015329
Yuqin Zhang, Amichai Berman, Eilon Shani
{"title":"Plant Hormone Transport and Localization: Signaling Molecules on the Move.","authors":"Yuqin Zhang,&nbsp;Amichai Berman,&nbsp;Eilon Shani","doi":"10.1146/annurev-arplant-070722-015329","DOIUrl":"https://doi.org/10.1146/annurev-arplant-070722-015329","url":null,"abstract":"<p><p>Plant hormones are a group of small signaling molecules produced by plants at very low concentrations that have the ability to move and function at distal sites. Hormone homeostasis is critical to balance plant growth and development and is regulated at multiple levels, including hormone biosynthesis, catabolism, perception, and transduction. In addition, plants move hormones over short and long distances to regulate various developmental processes and responses to environmental factors. Transporters coordinate these movements, resulting in hormone maxima, gradients, and cellular and subcellular sinks. Here, we summarize the current knowledge of most of the characterized plant hormone transporters with respect to biochemical, physiological, and developmental activities. We further discuss the subcellular localizations of transporters, their substrate specificities, and the need for multiple transporters for the same hormone in the context of plant growth and development.</p>","PeriodicalId":8335,"journal":{"name":"Annual review of plant biology","volume":"74 ","pages":"453-479"},"PeriodicalIF":23.9,"publicationDate":"2023-05-22","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9884313","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 5
Between-Plant Signaling. 进行植物信号。
IF 23.9 1区 生物学
Annual review of plant biology Pub Date : 2023-05-22 DOI: 10.1146/annurev-arplant-070122-015430
Guojing Shen, Jingxiong Zhang, Yunting Lei, Yuxing Xu, Jianqiang Wu
{"title":"Between-Plant Signaling.","authors":"Guojing Shen,&nbsp;Jingxiong Zhang,&nbsp;Yunting Lei,&nbsp;Yuxing Xu,&nbsp;Jianqiang Wu","doi":"10.1146/annurev-arplant-070122-015430","DOIUrl":"https://doi.org/10.1146/annurev-arplant-070122-015430","url":null,"abstract":"<p><p>Parasitic plants use a special organ, the haustorium, to attach to and penetrate host tissues, forming phloem and/or xylem fusion with the host vascular systems. Across this haustorium-host interface, not only water and nutrients are extracted from the host by the parasitic plant, but also secondary metabolites, messenger RNAs, noncoding RNAs, proteins, and systemic signals are transported between the parasite and host and even among different hosts connected by a parasite. Furthermore, mycorrhizal fungi can form common mycelial networks (CMNs) that simultaneously interconnect multiple plants. Increasing lines of evidence suggest that CMNs can function as conduits, transferring stress-related systemic signals between plants. Between-plant signaling mediated by haustoria and CMNs likely has a profound impact on plant interactions with other organisms and adaptation to environmental factors. Here, we summarize the findings regarding between-plant transfer of biomolecules and systemic signals and the current understanding of the physiological and ecological implications of between-plant signaling.</p>","PeriodicalId":8335,"journal":{"name":"Annual review of plant biology","volume":"74 ","pages":"367-386"},"PeriodicalIF":23.9,"publicationDate":"2023-05-22","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9565657","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 3
Where, When, and Why Do Plant Volatiles Mediate Ecological Signaling? The Answer Is Blowing in the Wind. 植物挥发物在何时、何地以及为何介导生态信号?答案在风中飘荡。
IF 23.9 1区 生物学
Annual review of plant biology Pub Date : 2023-05-22 DOI: 10.1146/annurev-arplant-040121-114908
Meredith C Schuman
{"title":"Where, When, and Why Do Plant Volatiles Mediate Ecological Signaling? The Answer Is Blowing in the Wind.","authors":"Meredith C Schuman","doi":"10.1146/annurev-arplant-040121-114908","DOIUrl":"https://doi.org/10.1146/annurev-arplant-040121-114908","url":null,"abstract":"<p><p>Plant volatiles comprise thousands of molecules from multiple metabolic pathways, distinguished by sufficient vapor pressure to evaporate into the headspace under normal environmental conditions. Many are implicated as ecological signals, but what is the evidence-and how do they work? Volatiles diffuse, are carried by wind, and may be taken up by other organisms or degrade with exposure to atmospheric ozone, radicals, and UV light; visual signals such as color are not subject to these complications (but require a line of sight). Distantly related plants-and nonplants-produce many of the same volatiles, yet specific compounds and blends may be distinct. Here, I present a quantitative review of the literature on plant volatiles as ecological signals, illustrating a field that has focused on developing ideas as much as reporting primary data. I discuss advantages and constraints, review recent advances, and propose considerations for primary studies to elucidate particular functions of plant volatiles.</p>","PeriodicalId":8335,"journal":{"name":"Annual review of plant biology","volume":"74 ","pages":"609-633"},"PeriodicalIF":23.9,"publicationDate":"2023-05-22","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9513585","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 2
Chloroplast Proteostasis: Import, Sorting, Ubiquitination, and Proteolysis. 叶绿体蛋白质静止:输入、分选、泛素化和蛋白质水解。
IF 23.9 1区 生物学
Annual review of plant biology Pub Date : 2023-05-22 DOI: 10.1146/annurev-arplant-070122-032532
Yi Sun, R Paul Jarvis
{"title":"Chloroplast Proteostasis: Import, Sorting, Ubiquitination, and Proteolysis.","authors":"Yi Sun,&nbsp;R Paul Jarvis","doi":"10.1146/annurev-arplant-070122-032532","DOIUrl":"https://doi.org/10.1146/annurev-arplant-070122-032532","url":null,"abstract":"<p><p>Chloroplasts are the defining plant organelles with responsibility for photosynthesis and other vital functions. To deliver these functions, they possess a complex proteome comprising thousands of largely nucleus-encoded proteins. Composition of the proteome is controlled by diverse processes affecting protein translocation and degradation-our focus here. Most chloroplast proteins are imported from the cytosol via multiprotein translocons in the outer and inner envelope membranes (the TOC and TIC complexes, respectively), or via one of several noncanonical pathways, and then sorted by different systems to organellar subcompartments. Chloroplast proteolysis is equally complex, involving the concerted action of internal proteases of prokaryotic origin and the nucleocytosolic ubiquitin-proteasome system (UPS). The UPS degrades unimported proteins in the cytosol and chloroplast-resident proteins via chloroplast-associated protein degradation (CHLORAD). The latter targets the TOC apparatus to regulate protein import, as well as numerous internal proteins directly, to reconfigure chloroplast functions in response to developmental and environmental signals.</p>","PeriodicalId":8335,"journal":{"name":"Annual review of plant biology","volume":"74 ","pages":"259-283"},"PeriodicalIF":23.9,"publicationDate":"2023-05-22","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9514861","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 3
Epigenetic Regulation During Plant Development and the Capacity for Epigenetic Memory. 植物发育过程中的表观遗传调控与表观遗传记忆能力。
IF 23.9 1区 生物学
Annual review of plant biology Pub Date : 2023-05-22 DOI: 10.1146/annurev-arplant-070122-025047
Elizabeth A Hemenway, Mary Gehring
{"title":"Epigenetic Regulation During Plant Development and the Capacity for Epigenetic Memory.","authors":"Elizabeth A Hemenway,&nbsp;Mary Gehring","doi":"10.1146/annurev-arplant-070122-025047","DOIUrl":"https://doi.org/10.1146/annurev-arplant-070122-025047","url":null,"abstract":"<p><p>The establishment, maintenance, and removal of epigenetic modifications provide an additional layer of regulation, beyond genetically encoded factors, by which plants can control developmental processes and adapt to the environment. Epigenetic inheritance, while historically referring to information not encoded in the DNA sequence that is inherited between generations, can also refer to epigenetic modifications that are maintained within an individual but are reset between generations. Both types of epigenetic inheritance occur in plants, and the functions and mechanisms distinguishing the two are of great interest to the field. Here, we discuss examples of epigenetic dynamics and maintenance during selected stages of growth and development and their functional consequences. Epigenetic states are also dynamic in response to stress, with consequences for transposable element regulation. How epigenetic resetting between generations occurs during normal development and in response to stress is an emerging area of research.</p>","PeriodicalId":8335,"journal":{"name":"Annual review of plant biology","volume":"74 ","pages":"87-109"},"PeriodicalIF":23.9,"publicationDate":"2023-05-22","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10280588/pdf/nihms-1907770.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9719952","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 2
Why Are Invasive Plants Successful? 入侵植物为什么会成功?
IF 23.9 1区 生物学
Annual review of plant biology Pub Date : 2023-05-22 DOI: 10.1146/annurev-arplant-070522-071021
Margherita Gioria, Philip E Hulme, David M Richardson, Petr Pyšek
{"title":"Why Are Invasive Plants Successful?","authors":"Margherita Gioria,&nbsp;Philip E Hulme,&nbsp;David M Richardson,&nbsp;Petr Pyšek","doi":"10.1146/annurev-arplant-070522-071021","DOIUrl":"https://doi.org/10.1146/annurev-arplant-070522-071021","url":null,"abstract":"<p><p>Plant invasions, a byproduct of globalization, are increasing worldwide. Because of their ecological and economic impacts, considerable efforts have been made to understand and predict the success of non-native plants. Numerous frameworks, hypotheses, and theories have been advanced to conceptualize the interactions of multiple drivers and context dependence of invasion success with the aim of achieving robust explanations with predictive power. We review these efforts from a community-level perspective rather than a biogeographical one, focusing on terrestrial systems, and explore the roles of intrinsic plant properties in determining species invasiveness, as well as the effects of biotic and abiotic conditions in mediating ecosystem invasibility (or resistance) and ecological and evolutionary processes. We also consider the fundamental influences of human-induced changes at scales ranging from local to global in triggering, promoting, and sustaining plant invasions and discuss how these changes could alter future invasion trajectories.</p>","PeriodicalId":8335,"journal":{"name":"Annual review of plant biology","volume":"74 ","pages":"635-670"},"PeriodicalIF":23.9,"publicationDate":"2023-05-22","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9514814","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 8
Phyllosphere Microbiome. 叶围微生物。
IF 23.9 1区 生物学
Annual review of plant biology Pub Date : 2023-05-22 DOI: 10.1146/annurev-arplant-102820-032704
Reza Sohrabi, Bradley C Paasch, Julian A Liber, Sheng Yang He
{"title":"Phyllosphere Microbiome.","authors":"Reza Sohrabi,&nbsp;Bradley C Paasch,&nbsp;Julian A Liber,&nbsp;Sheng Yang He","doi":"10.1146/annurev-arplant-102820-032704","DOIUrl":"https://doi.org/10.1146/annurev-arplant-102820-032704","url":null,"abstract":"<p><p>The aboveground parts of terrestrial plants are colonized by a variety of microbes that collectively constitute the phyllosphere microbiota. Decades of pioneering work using individual phyllosphere microbes, including commensals and pathogens, have provided foundational knowledge about how individual microbes adapt to the phyllosphere environment and their role in providing biological control against pathogens. Recent studies have revealed a more complete repertoire of phyllosphere microbiota across plant taxa and how plants respond to and regulate the level and composition of phyllosphere microbiota. Importantly, the development of several gnotobiotic systems is allowing causative and mechanistic studies to determine the contributions of microbiota to phyllosphere health and productivity. New insights into how the phyllosphere carries out key biological processes, including photosynthesis, biomass accumulation, reproduction, and defense against biotic and abiotic insults, in either the presence or absence of a normal microbiota could unleash novel plant- and microbiota-based technologies to improve agriculturally relevant traits of crop plants.</p>","PeriodicalId":8335,"journal":{"name":"Annual review of plant biology","volume":"74 ","pages":"539-568"},"PeriodicalIF":23.9,"publicationDate":"2023-05-22","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9514864","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 16
Plant Small RNAs: Their Biogenesis, Regulatory Roles, and Functions. 植物小rna:它们的生物发生、调控作用和功能。
IF 23.9 1区 生物学
Annual review of plant biology Pub Date : 2023-05-22 DOI: 10.1146/annurev-arplant-070122-035226
Junpeng Zhan, Blake C Meyers
{"title":"Plant Small RNAs: Their Biogenesis, Regulatory Roles, and Functions.","authors":"Junpeng Zhan,&nbsp;Blake C Meyers","doi":"10.1146/annurev-arplant-070122-035226","DOIUrl":"https://doi.org/10.1146/annurev-arplant-070122-035226","url":null,"abstract":"<p><p>Plant cells accumulate small RNA molecules that regulate plant development, genome stability, and environmental responses. These small RNAs fall into three major classes based on their function and mechanisms of biogenesis-microRNAs, heterochromatic small interfering RNAs, and secondary small interfering RNAs-plus several other less well-characterized categories. Biogenesis of each small RNA class requires a pathway of factors, some specific to each pathway and others involved in multiple pathways. Diverse sequenced plant genomes, along with rapid developments in sequencing, imaging, and genetic transformation techniques, have enabled significant progress in understanding the biogenesis, functions, and evolution of plant small RNAs, including those that had been poorly characterized because they were absent or had low representation in <i>Arabidopsis</i> (<i>Arabidopsis thaliana</i>). Here, we review recent findings about plant small RNAs and discuss our current understanding of their biogenesis mechanisms, targets, modes of action, mobility, and functions in <i>Arabidopsis</i> and other plant species, including economically important crops.</p>","PeriodicalId":8335,"journal":{"name":"Annual review of plant biology","volume":"74 ","pages":"21-51"},"PeriodicalIF":23.9,"publicationDate":"2023-05-22","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9514867","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 14
The Role and Activity of SWI/SNF Chromatin Remodelers. SWI/SNF染色质重塑子的作用和活性。
IF 23.9 1区 生物学
Annual review of plant biology Pub Date : 2023-05-22 DOI: 10.1146/annurev-arplant-102820-093218
Tomasz Bieluszewski, Sandhan Prakash, Thomas Roulé, Doris Wagner
{"title":"The Role and Activity of SWI/SNF Chromatin Remodelers.","authors":"Tomasz Bieluszewski,&nbsp;Sandhan Prakash,&nbsp;Thomas Roulé,&nbsp;Doris Wagner","doi":"10.1146/annurev-arplant-102820-093218","DOIUrl":"https://doi.org/10.1146/annurev-arplant-102820-093218","url":null,"abstract":"<p><p>SWITCH deficient SUCROSE NONFERMENTING (SWI/SNF) class chromatin remodeling complexes (CRCs) use the energy derived from ATP hydrolysis to facilitate access of proteins to the genomic DNA for transcription, replication, and DNA repair. Uniquely, SWI/SNF CRCs can both slide the histone octamer along the DNA or eject it from the DNA. Given their ability to change the chromatin status quo, SWI/SNF remodelers are critical for cell fate reprogramming with pioneer and other transcription factors, for responses to environmental challenges, and for disease prevention. Recent cryo-electron microscopy and mass spectrometry approaches have uncovered different subtypes of SWI/SNF complexes with unique properties and functions. At the same time, tethering or rapid depletion and inactivation of SWI/SNF have provided novel insight into SWI/SNF requirements for enhancer activity and into balancing chromatin compaction and accessibility in concert with Polycomb complexes. Given their importance, SWI/SNF recruitment to genomic locations by transcription factors and their biochemical activity is tightly controlled. This review focuses on recent advances in our understanding of SWI/SNF CRCs in animals and plants and discusses the multiple nuclear and biological roles of SWI/SNF CRCs and how SWI/SNF activity is altered by complex subunit composition, posttranslational modifications, and the chromatin context to support proper development and response to extrinsic cues.</p>","PeriodicalId":8335,"journal":{"name":"Annual review of plant biology","volume":"74 ","pages":"139-163"},"PeriodicalIF":23.9,"publicationDate":"2023-05-22","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9867908","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 3
Causes of Mutation Rate Variability in Plant Genomes. 植物基因组突变率变异的原因。
IF 23.9 1区 生物学
Annual review of plant biology Pub Date : 2023-05-22 DOI: 10.1146/annurev-arplant-070522-054109
Daniela Quiroz, Mariele Lensink, Daniel J Kliebenstein, J Grey Monroe
{"title":"Causes of Mutation Rate Variability in Plant Genomes.","authors":"Daniela Quiroz,&nbsp;Mariele Lensink,&nbsp;Daniel J Kliebenstein,&nbsp;J Grey Monroe","doi":"10.1146/annurev-arplant-070522-054109","DOIUrl":"https://doi.org/10.1146/annurev-arplant-070522-054109","url":null,"abstract":"<p><p>Mutation is the source of all heritable diversity, the essential material of evolution and breeding. While mutation rates are often regarded as constant, variability in mutation rates has been observed at nearly every level-varying across mutation types, genome locations, gene functions, epigenomic contexts, environmental conditions, genotypes, and species. This mutation rate variation arises from differential rates of DNA damage, repair, and transposable element activation and insertion that together produce what is measured by DNA mutation rates. We review historical and recent investigations into the causes and consequences of mutation rate variability in plants by focusing on the mechanisms shaping this variation. Emerging mechanistic models point to the evolvability of mutation rate variation across genomes via mechanisms that target DNA repair, shaping the diversification of plants at phenotypic and genomic scales.</p>","PeriodicalId":8335,"journal":{"name":"Annual review of plant biology","volume":"74 ","pages":"751-775"},"PeriodicalIF":23.9,"publicationDate":"2023-05-22","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9884310","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 1
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