Annual review of plant biology最新文献_第5页

Chloroplast Proteostasis: Import, Sorting, Ubiquitination, and Proteolysis. 叶绿体蛋白质静止:输入、分选、泛素化和蛋白质水解。

IF 23.9 1区生物学

Annual review of plant biology Pub Date : 2023-05-22 DOI: 10.1146/annurev-arplant-070122-032532

Yi Sun, R Paul Jarvis

{"title":"Chloroplast Proteostasis: Import, Sorting, Ubiquitination, and Proteolysis.","authors":"Yi Sun, R Paul Jarvis","doi":"10.1146/annurev-arplant-070122-032532","DOIUrl":"https://doi.org/10.1146/annurev-arplant-070122-032532","url":null,"abstract":"Chloroplasts are the defining plant organelles with responsibility for photosynthesis and other vital functions. To deliver these functions, they possess a complex proteome comprising thousands of largely nucleus-encoded proteins. Composition of the proteome is controlled by diverse processes affecting protein translocation and degradation-our focus here. Most chloroplast proteins are imported from the cytosol via multiprotein translocons in the outer and inner envelope membranes (the TOC and TIC complexes, respectively), or via one of several noncanonical pathways, and then sorted by different systems to organellar subcompartments. Chloroplast proteolysis is equally complex, involving the concerted action of internal proteases of prokaryotic origin and the nucleocytosolic ubiquitin-proteasome system (UPS). The UPS degrades unimported proteins in the cytosol and chloroplast-resident proteins via chloroplast-associated protein degradation (CHLORAD). The latter targets the TOC apparatus to regulate protein import, as well as numerous internal proteins directly, to reconfigure chloroplast functions in response to developmental and environmental signals.","PeriodicalId":8335,"journal":{"name":"Annual review of plant biology","volume":"74 ","pages":"259-283"},"PeriodicalIF":23.9,"publicationDate":"2023-05-22","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9514861","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

引用次数: 3

Epigenetic Regulation During Plant Development and the Capacity for Epigenetic Memory. 植物发育过程中的表观遗传调控与表观遗传记忆能力。

IF 23.9 1区生物学

Annual review of plant biology Pub Date : 2023-05-22 DOI: 10.1146/annurev-arplant-070122-025047

Elizabeth A Hemenway, Mary Gehring

{"title":"Epigenetic Regulation During Plant Development and the Capacity for Epigenetic Memory.","authors":"Elizabeth A Hemenway, Mary Gehring","doi":"10.1146/annurev-arplant-070122-025047","DOIUrl":"https://doi.org/10.1146/annurev-arplant-070122-025047","url":null,"abstract":"The establishment, maintenance, and removal of epigenetic modifications provide an additional layer of regulation, beyond genetically encoded factors, by which plants can control developmental processes and adapt to the environment. Epigenetic inheritance, while historically referring to information not encoded in the DNA sequence that is inherited between generations, can also refer to epigenetic modifications that are maintained within an individual but are reset between generations. Both types of epigenetic inheritance occur in plants, and the functions and mechanisms distinguishing the two are of great interest to the field. Here, we discuss examples of epigenetic dynamics and maintenance during selected stages of growth and development and their functional consequences. Epigenetic states are also dynamic in response to stress, with consequences for transposable element regulation. How epigenetic resetting between generations occurs during normal development and in response to stress is an emerging area of research.","PeriodicalId":8335,"journal":{"name":"Annual review of plant biology","volume":"74 ","pages":"87-109"},"PeriodicalIF":23.9,"publicationDate":"2023-05-22","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10280588/pdf/nihms-1907770.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9719952","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

引用次数: 2

Why Are Invasive Plants Successful? 入侵植物为什么会成功?

IF 23.9 1区生物学

Annual review of plant biology Pub Date : 2023-05-22 DOI: 10.1146/annurev-arplant-070522-071021

Margherita Gioria, Philip E Hulme, David M Richardson, Petr Pyšek

引用次数: 8

Phyllosphere Microbiome. 叶围微生物。

IF 23.9 1区生物学

Annual review of plant biology Pub Date : 2023-05-22 DOI: 10.1146/annurev-arplant-102820-032704

Reza Sohrabi, Bradley C Paasch, Julian A Liber, Sheng Yang He

{"title":"Phyllosphere Microbiome.","authors":"Reza Sohrabi, Bradley C Paasch, Julian A Liber, Sheng Yang He","doi":"10.1146/annurev-arplant-102820-032704","DOIUrl":"https://doi.org/10.1146/annurev-arplant-102820-032704","url":null,"abstract":"The aboveground parts of terrestrial plants are colonized by a variety of microbes that collectively constitute the phyllosphere microbiota. Decades of pioneering work using individual phyllosphere microbes, including commensals and pathogens, have provided foundational knowledge about how individual microbes adapt to the phyllosphere environment and their role in providing biological control against pathogens. Recent studies have revealed a more complete repertoire of phyllosphere microbiota across plant taxa and how plants respond to and regulate the level and composition of phyllosphere microbiota. Importantly, the development of several gnotobiotic systems is allowing causative and mechanistic studies to determine the contributions of microbiota to phyllosphere health and productivity. New insights into how the phyllosphere carries out key biological processes, including photosynthesis, biomass accumulation, reproduction, and defense against biotic and abiotic insults, in either the presence or absence of a normal microbiota could unleash novel plant- and microbiota-based technologies to improve agriculturally relevant traits of crop plants.","PeriodicalId":8335,"journal":{"name":"Annual review of plant biology","volume":"74 ","pages":"539-568"},"PeriodicalIF":23.9,"publicationDate":"2023-05-22","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9514864","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

引用次数: 16

Plant Small RNAs: Their Biogenesis, Regulatory Roles, and Functions. 植物小rna:它们的生物发生、调控作用和功能。

IF 23.9 1区生物学

Annual review of plant biology Pub Date : 2023-05-22 DOI: 10.1146/annurev-arplant-070122-035226

Junpeng Zhan, Blake C Meyers

{"title":"Plant Small RNAs: Their Biogenesis, Regulatory Roles, and Functions.","authors":"Junpeng Zhan, Blake C Meyers","doi":"10.1146/annurev-arplant-070122-035226","DOIUrl":"https://doi.org/10.1146/annurev-arplant-070122-035226","url":null,"abstract":"Plant cells accumulate small RNA molecules that regulate plant development, genome stability, and environmental responses. These small RNAs fall into three major classes based on their function and mechanisms of biogenesis-microRNAs, heterochromatic small interfering RNAs, and secondary small interfering RNAs-plus several other less well-characterized categories. Biogenesis of each small RNA class requires a pathway of factors, some specific to each pathway and others involved in multiple pathways. Diverse sequenced plant genomes, along with rapid developments in sequencing, imaging, and genetic transformation techniques, have enabled significant progress in understanding the biogenesis, functions, and evolution of plant small RNAs, including those that had been poorly characterized because they were absent or had low representation in Arabidopsis (Arabidopsis thaliana). Here, we review recent findings about plant small RNAs and discuss our current understanding of their biogenesis mechanisms, targets, modes of action, mobility, and functions in Arabidopsis and other plant species, including economically important crops.","PeriodicalId":8335,"journal":{"name":"Annual review of plant biology","volume":"74 ","pages":"21-51"},"PeriodicalIF":23.9,"publicationDate":"2023-05-22","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9514867","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

引用次数: 14

The Role and Activity of SWI/SNF Chromatin Remodelers. SWI/SNF染色质重塑子的作用和活性。

IF 23.9 1区生物学

Annual review of plant biology Pub Date : 2023-05-22 DOI: 10.1146/annurev-arplant-102820-093218

Tomasz Bieluszewski, Sandhan Prakash, Thomas Roulé, Doris Wagner

{"title":"The Role and Activity of SWI/SNF Chromatin Remodelers.","authors":"Tomasz Bieluszewski, Sandhan Prakash, Thomas Roulé, Doris Wagner","doi":"10.1146/annurev-arplant-102820-093218","DOIUrl":"https://doi.org/10.1146/annurev-arplant-102820-093218","url":null,"abstract":"SWITCH deficient SUCROSE NONFERMENTING (SWI/SNF) class chromatin remodeling complexes (CRCs) use the energy derived from ATP hydrolysis to facilitate access of proteins to the genomic DNA for transcription, replication, and DNA repair. Uniquely, SWI/SNF CRCs can both slide the histone octamer along the DNA or eject it from the DNA. Given their ability to change the chromatin status quo, SWI/SNF remodelers are critical for cell fate reprogramming with pioneer and other transcription factors, for responses to environmental challenges, and for disease prevention. Recent cryo-electron microscopy and mass spectrometry approaches have uncovered different subtypes of SWI/SNF complexes with unique properties and functions. At the same time, tethering or rapid depletion and inactivation of SWI/SNF have provided novel insight into SWI/SNF requirements for enhancer activity and into balancing chromatin compaction and accessibility in concert with Polycomb complexes. Given their importance, SWI/SNF recruitment to genomic locations by transcription factors and their biochemical activity is tightly controlled. This review focuses on recent advances in our understanding of SWI/SNF CRCs in animals and plants and discusses the multiple nuclear and biological roles of SWI/SNF CRCs and how SWI/SNF activity is altered by complex subunit composition, posttranslational modifications, and the chromatin context to support proper development and response to extrinsic cues.","PeriodicalId":8335,"journal":{"name":"Annual review of plant biology","volume":"74 ","pages":"139-163"},"PeriodicalIF":23.9,"publicationDate":"2023-05-22","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9867908","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

引用次数: 3

Causes of Mutation Rate Variability in Plant Genomes. 植物基因组突变率变异的原因。

IF 23.9 1区生物学

Annual review of plant biology Pub Date : 2023-05-22 DOI: 10.1146/annurev-arplant-070522-054109

Daniela Quiroz, Mariele Lensink, Daniel J Kliebenstein, J Grey Monroe

引用次数: 1

The Power and Perils of De Novo Domestication Using Genome Editing. 利用基因组编辑重新驯化的力量和危险。

IF 23.9 1区生物学

Annual review of plant biology Pub Date : 2023-05-22 DOI: 10.1146/annurev-arplant-053122-030653

Madelaine E Bartlett, Brook T Moyers, Jarrett Man, Banu Subramaniam, Nokwanda P Makunga

{"title":"The Power and Perils of De Novo Domestication Using Genome Editing.","authors":"Madelaine E Bartlett, Brook T Moyers, Jarrett Man, Banu Subramaniam, Nokwanda P Makunga","doi":"10.1146/annurev-arplant-053122-030653","DOIUrl":"https://doi.org/10.1146/annurev-arplant-053122-030653","url":null,"abstract":"There is intense interest in using genome editing technologies to domesticate wild plants, or accelerate the improvement of weakly domesticated crops, in de novo domestication. Here, we discuss promising genetic strategies, with a focus on plant development. Importantly, genome editing releases us from dependence on random mutagenesis or intraspecific diversity, allowing us to draw solutions more broadly from diversity. However, sparse understanding of the complex genetics of diversity limits innovation. Beyond genetics, we urge the ethical use of indigenous knowledge, indigenous plants, and ethnobotany. De novo domestication still requires conventional breeding by phenotypic selection, especially in the development of crops for diverse environments and cultures. Indeed, uniting genome editing with selective breeding could facilitate faster and better outcomes than either technology alone. Domestication is complex and incompletely understood, involving changes to many aspects of plant biology and human culture. Success in de novo domestication requires careful attention to history and collaboration across traditional boundaries.","PeriodicalId":8335,"journal":{"name":"Annual review of plant biology","volume":"74 ","pages":"727-750"},"PeriodicalIF":23.9,"publicationDate":"2023-05-22","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9505842","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

引用次数: 9

New Horizons in Plant Photoperiodism. 植物光周期的新视野。

IF 23.9 1区生物学

Annual review of plant biology Pub Date : 2023-05-22 Epub Date: 2023-02-28 DOI: 10.1146/annurev-arplant-070522-055628

Joshua M Gendron, Dorothee Staiger

{"title":"New Horizons in Plant Photoperiodism.","authors":"Joshua M Gendron, Dorothee Staiger","doi":"10.1146/annurev-arplant-070522-055628","DOIUrl":"10.1146/annurev-arplant-070522-055628","url":null,"abstract":"Photoperiod-measuring mechanisms allow organisms to anticipate seasonal changes to align reproduction and growth with appropriate times of the year. This review provides historical and modern context to studies of plant photoperiodism. We describe how studies of photoperiodic flowering in plants led to the first theoretical models of photoperiod-measuring mechanisms in any organism. We discuss how more recent molecular genetic studies in Arabidopsis and rice have revisited these concepts. We then discuss how photoperiod transcriptomics provides new lessons about photoperiodic gene regulatory networks and the discovery of noncanonical photoperiod-measuring systems housed in metabolic networks of plants. This leads to an examination of nonflowering developmental processes controlled by photoperiod, including metabolism and growth. Finally, we highlight the importance of understanding photoperiodism in the context of climate change, delving into the rapid latitudinal migration of plant species and the potential role of photoperiod-measuring systems in generating photic barriers during migration.","PeriodicalId":8335,"journal":{"name":"Annual review of plant biology","volume":"74 ","pages":"481-509"},"PeriodicalIF":23.9,"publicationDate":"2023-05-22","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11114106/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9517918","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

引用次数: 0

The Evolution and Evolvability of Photosystem II. 光系统的进化与可进化性2。

IF 23.9 1区生物学

Annual review of plant biology Pub Date : 2023-05-22 DOI: 10.1146/annurev-arplant-070522-062509

Thomas Oliver, Tom D Kim, Joko P Trinugroho, Violeta Cordón-Preciado, Nitara Wijayatilake, Aaryan Bhatia, A William Rutherford, Tanai Cardona

{"title":"The Evolution and Evolvability of Photosystem II.","authors":"Thomas Oliver, Tom D Kim, Joko P Trinugroho, Violeta Cordón-Preciado, Nitara Wijayatilake, Aaryan Bhatia, A William Rutherford, Tanai Cardona","doi":"10.1146/annurev-arplant-070522-062509","DOIUrl":"https://doi.org/10.1146/annurev-arplant-070522-062509","url":null,"abstract":"Photosystem II is the water-oxidizing and O2-evolving enzyme of photosynthesis. How and when this remarkable enzyme arose are fundamental questions in the history of life that have remained difficult to answer. Here, recent advances in our understanding of the origin and evolution of photosystem II are reviewed and discussed in detail. The evolution of photosystem II indicates that water oxidation originated early in the history of life, long before the diversification of cyanobacteria and other major groups of prokaryotes, challenging and transforming current paradigms on the evolution of photosynthesis. We show that photosystem II has remained virtually unchanged for billions of years, and yet the nonstop duplication process of the D1 subunit of photosystem II, which controls photochemistry and catalysis, has enabled the enzyme to become adaptable to variable environmental conditions and even to innovate enzymatic functions beyond water oxidation. We suggest that this evolvability can be harnessed to develop novel light-powered enzymes with the capacity to carry out complex multistep oxidative transformations for sustainable biocatalysis.","PeriodicalId":8335,"journal":{"name":"Annual review of plant biology","volume":"74 ","pages":"225-257"},"PeriodicalIF":23.9,"publicationDate":"2023-05-22","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9884311","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

引用次数: 5