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Cultivation of anaerobic bacteria: Foundations and principles 厌氧细菌的培养:基础和原理
IF 2.5 3区 生物学
Anaerobe Pub Date : 2025-06-01 Epub Date: 2025-03-24 DOI: 10.1016/j.anaerobe.2025.102951
Paul A. Lawson, Ralph S. Tanner
{"title":"Cultivation of anaerobic bacteria: Foundations and principles","authors":"Paul A. Lawson,&nbsp;Ralph S. Tanner","doi":"10.1016/j.anaerobe.2025.102951","DOIUrl":"10.1016/j.anaerobe.2025.102951","url":null,"abstract":"<div><div>A brief history of techniques in anaerobic microbiology are presented leading up to the incorporation of several improvements we have used over the years to improve our culture of anaerobic microorganisms of environmental, industrial and clinical importance. Two overriding aspects from our combined 90 years of experience here are: the better one's control of anaerobic conditions and gas phases, the better results are obtained; techniques can and should be targeted for individual microorganisms and accompanying experiments. Continued improvements in anaerobic microbiology are expected and encouraged for the future.</div></div>","PeriodicalId":8050,"journal":{"name":"Anaerobe","volume":"93 ","pages":"Article 102951"},"PeriodicalIF":2.5,"publicationDate":"2025-06-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143724611","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Prevalence of toxigenic Clostridium botulinum in food products sold in Indian retail markets 在印度零售市场销售的食品中产毒梭菌肉毒杆菌的流行。
IF 2.5 3区 生物学
Anaerobe Pub Date : 2025-06-01 Epub Date: 2025-03-19 DOI: 10.1016/j.anaerobe.2025.102954
Athira Vidyadharan, Arun Jyothi Puthiya Veettil, Athira Pulickal Santhosh, Kuttanapilly Velayudhan Lalitha, Toms Cheriyath Joseph
{"title":"Prevalence of toxigenic Clostridium botulinum in food products sold in Indian retail markets","authors":"Athira Vidyadharan,&nbsp;Arun Jyothi Puthiya Veettil,&nbsp;Athira Pulickal Santhosh,&nbsp;Kuttanapilly Velayudhan Lalitha,&nbsp;Toms Cheriyath Joseph","doi":"10.1016/j.anaerobe.2025.102954","DOIUrl":"10.1016/j.anaerobe.2025.102954","url":null,"abstract":"<div><h3>Introduction</h3><div><em>Clostridium botulinum</em> and botulinum neurotoxins have been recognized as an important food safety hazard. The objective of this study was to screen the prevalence of <em>C. botulinum</em> and botulinum toxin in various food products sold in the retail markets of India.</div></div><div><h3>Material and methods</h3><div>A total of 236 food products collected from Indian retail markets were screened for preformed botulinum toxin using a mouse bioassay. This was followed by enrichment and isolation and further testing of isolates for botulinum toxin production using an additional mouse bioassay. A toxin neutralization test with type specific antitoxins, 16S rRNA gene sequencing and <em>BoNT</em> (botulinum neurotoxin) gene amplification confirmed the presence of <em>C. botulinum</em> and its toxin production potential.</div></div><div><h3>Results and discussion</h3><div>Preformed botulinum toxin was not detected in any of the products. The overall prevalence of <em>C. botulinum</em> in the products was 11 %, but pure cultures of <em>C. botulinum</em> could be isolated only from 10 samples. The isolates were identified as <em>C. botulinum</em> type A, type B and type E based on toxin typing with type specific antitoxins and amplification of the botulinum neurotoxin (<em>BoNT)</em> gene. One of the isolates was designated as <em>C. botulinum</em> subtype A<sub>1</sub>B. This is the first report of isolation of <em>C. botulinum</em> type E and subtype A<sub>1</sub>B in seafood from India. The presence of <em>C. botulinum</em> in the products tested can be a significant public health hazard since the organism can grow when exposed to favourable conditions and can produce neurotoxin in the food.</div></div>","PeriodicalId":8050,"journal":{"name":"Anaerobe","volume":"93 ","pages":"Article 102954"},"PeriodicalIF":2.5,"publicationDate":"2025-06-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143673199","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Obituary of Mike Cox (1945–2024) 迈克·考克斯讣告(1945-2024)
IF 2.5 3区 生物学
Anaerobe Pub Date : 2025-06-01 Epub Date: 2025-03-22 DOI: 10.1016/j.anaerobe.2025.102956
Elisabeth Nagy, Ellen Jo Baron
{"title":"Obituary of Mike Cox (1945–2024)","authors":"Elisabeth Nagy,&nbsp;Ellen Jo Baron","doi":"10.1016/j.anaerobe.2025.102956","DOIUrl":"10.1016/j.anaerobe.2025.102956","url":null,"abstract":"","PeriodicalId":8050,"journal":{"name":"Anaerobe","volume":"93 ","pages":"Article 102956"},"PeriodicalIF":2.5,"publicationDate":"2025-06-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143680325","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
A rare isolation of Parvimonas micra from cerebellar abscess in a patient with complex cyanotic heart disease 一个罕见的分离微小微小单胞菌小脑脓肿患者的复杂紫绀性心脏病。
IF 2.5 3区 生物学
Anaerobe Pub Date : 2025-06-01 Epub Date: 2025-02-01 DOI: 10.1016/j.anaerobe.2025.102943
Praveen Ravichandran , Ramit Kundu , Rakhi Biswas , Sathiaprabhu Anbazhagan
{"title":"A rare isolation of Parvimonas micra from cerebellar abscess in a patient with complex cyanotic heart disease","authors":"Praveen Ravichandran ,&nbsp;Ramit Kundu ,&nbsp;Rakhi Biswas ,&nbsp;Sathiaprabhu Anbazhagan","doi":"10.1016/j.anaerobe.2025.102943","DOIUrl":"10.1016/j.anaerobe.2025.102943","url":null,"abstract":"<div><div><em>Parvimonas micra</em> is a gram-positive coccus which is an obligate anaerobe. It is a commensal in the oropharyngeal cavity and the gastrointestinal tract. The genus <em>Parvimonas</em> has only a single species, <em>P. micra</em>. Although there are several reports of infections due to <em>P. micra</em> involving various body sites, cases of brain abscess due to this organism have been under-reported in the literature. Here we present a rare case of cerebellar abscess caused by <em>P. micra</em> in a nine-year-old boy with complex cyanotic heart disease<strong>.</strong></div></div>","PeriodicalId":8050,"journal":{"name":"Anaerobe","volume":"93 ","pages":"Article 102943"},"PeriodicalIF":2.5,"publicationDate":"2025-06-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143078484","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
CDBN-YGXZ shows highly antibacterial activity against Clostridioides difficile as a potential candidate drug CDBN-YGXZ对艰难梭菌具有较高的抑菌活性,是一种潜在的候选药物
IF 2.5 3区 生物学
Anaerobe Pub Date : 2025-06-01 Epub Date: 2025-04-25 DOI: 10.1016/j.anaerobe.2025.102964
Xiaoxia Zhang , Min Quan , Xin Lu , Linwan Zhang , Bing Guang , Zhiyong Zong , Xiaohui Wang
{"title":"CDBN-YGXZ shows highly antibacterial activity against Clostridioides difficile as a potential candidate drug","authors":"Xiaoxia Zhang ,&nbsp;Min Quan ,&nbsp;Xin Lu ,&nbsp;Linwan Zhang ,&nbsp;Bing Guang ,&nbsp;Zhiyong Zong ,&nbsp;Xiaohui Wang","doi":"10.1016/j.anaerobe.2025.102964","DOIUrl":"10.1016/j.anaerobe.2025.102964","url":null,"abstract":"<div><div>CDBN-YGXZ shows a low minimal inhibitory concentration range from 0.015 to 0.125 mg/L against clinical <em>Clostridioides difficile</em> strains with diverse genotypes, hardly induces bacterial resistance, and intensively inhibits 86.2 % of <em>C. difficile</em> adhesion to intestinal epithelial cells Caco-2. CDBN-YGXZ shows highly antibacterial activity and is potentially a candidate as a therapeutic drug.</div></div>","PeriodicalId":8050,"journal":{"name":"Anaerobe","volume":"93 ","pages":"Article 102964"},"PeriodicalIF":2.5,"publicationDate":"2025-06-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143881297","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
An older man with Bifidobacterium breve bacteremia, a rare condition in adults: A case report 一个老年男子与短双歧杆菌菌血症,一个罕见的条件在成人:一个病例报告。
IF 2.5 3区 生物学
Anaerobe Pub Date : 2025-06-01 Epub Date: 2025-04-26 DOI: 10.1016/j.anaerobe.2025.102968
Miku Muramatsu , Dai Akine , Teppei Sasahara , Takayuki Suzuki , Tomohiro Tamura , Takayuki Kaburagi , Shinya Watanabe
{"title":"An older man with Bifidobacterium breve bacteremia, a rare condition in adults: A case report","authors":"Miku Muramatsu ,&nbsp;Dai Akine ,&nbsp;Teppei Sasahara ,&nbsp;Takayuki Suzuki ,&nbsp;Tomohiro Tamura ,&nbsp;Takayuki Kaburagi ,&nbsp;Shinya Watanabe","doi":"10.1016/j.anaerobe.2025.102968","DOIUrl":"10.1016/j.anaerobe.2025.102968","url":null,"abstract":"<div><div><em>Bifidobacterium breve</em> is an anaerobic, gram-positive rod commonly found in the human intestinal microbiota. While rarely associated with bacteremia, most cases occur in neonates receiving <em>B. breve</em>-containing probiotics. Here, we report a rare case of <em>B. breve</em> bacteremia in an 80-year-old man presenting in cardiopulmonary arrest, despite not taking <em>B. breve</em>-containing probiotics. Blood cultures identified <em>B. breve</em>, and an 18-day course of antibiotics resolved the bacteremia. The rarity of adult cases may reflect age-related microbiota shifts and potential underdiagnosis due to the limited accuracy of rapid identification kits used in clinical practice.</div></div>","PeriodicalId":8050,"journal":{"name":"Anaerobe","volume":"93 ","pages":"Article 102968"},"PeriodicalIF":2.5,"publicationDate":"2025-06-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143960328","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
A metabolite dehydrogenase pathway represses sporulation of Clostridioides difficile 一种代谢物脱氢酶途径抑制艰难梭菌的产孢。
IF 2.5 3区 生物学
Anaerobe Pub Date : 2025-06-01 Epub Date: 2025-05-09 DOI: 10.1016/j.anaerobe.2025.102971
Daniela Wetzel , Arshad Rizvi , Adrianne N. Edwards , Shonna M. McBride
{"title":"A metabolite dehydrogenase pathway represses sporulation of Clostridioides difficile","authors":"Daniela Wetzel ,&nbsp;Arshad Rizvi ,&nbsp;Adrianne N. Edwards ,&nbsp;Shonna M. McBride","doi":"10.1016/j.anaerobe.2025.102971","DOIUrl":"10.1016/j.anaerobe.2025.102971","url":null,"abstract":"<div><h3>Objectives</h3><div><em>Clostridioides difficile</em> is a major gastrointestinal pathogen that is transmitted as a dormant spore. As an intestinal pathogen, <em>C. difficile</em> must contend with variable environmental conditions, including fluctuations in pH and nutrient availability. Nutrition and pH both influence growth and spore formation, but how pH and nutrition jointly influence sporulation are not known. In this study, we investigated the dual impact of pH and pH-dependent metabolism on <em>C. difficile</em> sporulation.</div></div><div><h3>Methods</h3><div>We examined the impacts of pH and the metabolite acetoin on <em>C. difficile</em> growth, gene expression, and sporulation.</div></div><div><h3>Results</h3><div>We found that expression of the predicted acetoin dehydrogenase operon, <em>CD0035-CD0039</em>, was pH-dependent and repressed by acetoin and pyruvate. Regulation of the <em>C. difficile CD0035-CD0039</em> locus is distinct from characterized orthologous systems and appears to involve a co-transcribed DeoR-family regulator, rather than a sigma<sup>54</sup>-dependent activator. In addition, an <em>CD0036</em> null mutant produced significantly more spores and initiated sporulation earlier than the parent strain. However, unlike other Firmicutes, growth and culture density of <em>C. difficile</em> was not increased by acetoin availability or disruption of the dehydrogenase pathway.</div></div><div><h3>Conclusions</h3><div>Together, these results indicate that acetoin, pH, and the <em>CD0036-CD0039</em> dehydrogenase pathway play important roles in nutritional repression of sporulation in <em>C. difficile</em>. However, the data do not support the involvement of the CD0036-CD0039 pathway in acetoin metabolism and acetoin is not a significant stationary phase energy source for <em>C. difficile</em>.</div></div>","PeriodicalId":8050,"journal":{"name":"Anaerobe","volume":"93 ","pages":"Article 102971"},"PeriodicalIF":2.5,"publicationDate":"2025-06-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143971075","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Molecular detection of toxigenic Clostridioides difficile in subgingival biofilm of severe periodontitis 重度牙周炎龈下生物膜中产毒艰难梭菌的分子检测。
IF 2.5 3区 生物学
Anaerobe Pub Date : 2025-06-01 Epub Date: 2025-03-15 DOI: 10.1016/j.anaerobe.2025.102955
Isabela Leite de Oliveira Rosa, Eliane de Oliveira Ferreira, Ana Paula Vieira Colombo
{"title":"Molecular detection of toxigenic Clostridioides difficile in subgingival biofilm of severe periodontitis","authors":"Isabela Leite de Oliveira Rosa,&nbsp;Eliane de Oliveira Ferreira,&nbsp;Ana Paula Vieira Colombo","doi":"10.1016/j.anaerobe.2025.102955","DOIUrl":"10.1016/j.anaerobe.2025.102955","url":null,"abstract":"<div><h3>Objectives</h3><div>The oral cavity is the main gateway for the entry of <em>C. difficile</em> spores to the digestive tract. In conditions of poor oral hygiene and periodontal diseases, the dysbiotic oral microbiota may be a reservoir for several human pathogens. Here, we explored the prevalence of <em>C. difficile</em> in the oral microbiota of patients with severe periodontitis by the molecular detection of species specific genes.</div></div><div><h3>Methods</h3><div>Subgingival biofilm, saliva and/or feces from 659 patients with gingivitis, periodontitis and no periodontal diseases were screened for the <em>tpi</em> and toxin A/B genes specific for <em>C. difficile</em> by multiplex PCR. Differences among groups were sought by the Chi-square test.</div></div><div><h3>Results</h3><div>The overall frequency of <em>C. difficile tpi</em> gene was 29 %, with a high detection of <em>tcd</em>B gene (44.8 %). Patients with periodontitis showed a greater prevalence of this gene in the biofilm than individuals with gingivitis and periodontal health (p = 0.001), particularly at more severe stages of disease (p &lt; 0.05). No toxin genes were detected in feces or biofilm from healthy patients, whereas &gt;70 % of the biofilm from patients with periodontal diseases were positive for these genes (p &lt; 0.001). Detection of <em>C. difficile tpi</em> gene in oral/fecal samples correlated with periodontal inflammation (p &lt; 0.05). A modest intra-individual agreement between <em>tpi</em> gene detection in feces and saliva was found within periodontitis patients (Kappa = 0.314; p = 0.003).</div></div><div><h3>Conclusion</h3><div>The high frequency of the <em>C. difficile</em> specific genes <em>tpi</em> and <em>tcd</em>B in the dysbiotic subgingival biofilm of advanced periodontitis could support the presence of the bacterium in this niche.</div></div>","PeriodicalId":8050,"journal":{"name":"Anaerobe","volume":"93 ","pages":"Article 102955"},"PeriodicalIF":2.5,"publicationDate":"2025-06-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143647230","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Novel competitive annealing-mediated isothermal amplification (CAMP)-based detection of epsilon toxin gene in Clostridium perfringens 基于竞争退火介导的等温扩增(CAMP)检测产气荚膜梭菌epsilon毒素基因的新方法。
IF 2.5 3区 生物学
Anaerobe Pub Date : 2025-06-01 Epub Date: 2025-03-26 DOI: 10.1016/j.anaerobe.2025.102958
A. Arun Prince Milton , Torik Basar , K. Srinivas , Aleimo G. Momin , Sabia Khan , G. Bhuvana Priya , Samir Das , S. Ghatak , K. Puro
{"title":"Novel competitive annealing-mediated isothermal amplification (CAMP)-based detection of epsilon toxin gene in Clostridium perfringens","authors":"A. Arun Prince Milton ,&nbsp;Torik Basar ,&nbsp;K. Srinivas ,&nbsp;Aleimo G. Momin ,&nbsp;Sabia Khan ,&nbsp;G. Bhuvana Priya ,&nbsp;Samir Das ,&nbsp;S. Ghatak ,&nbsp;K. Puro","doi":"10.1016/j.anaerobe.2025.102958","DOIUrl":"10.1016/j.anaerobe.2025.102958","url":null,"abstract":"<div><div>In this study, we developed a novel competitive annealing-mediated isothermal amplification (CAMP)-based assay for the detection of the <em>etx</em> gene, which encodes the epsilon toxin of <em>Clostridium perfringens</em>. The assay, performed at 60 °C for 60 min, demonstrated 100 % specificity and was 100 times more sensitive than endpoint PCR.</div></div>","PeriodicalId":8050,"journal":{"name":"Anaerobe","volume":"93 ","pages":"Article 102958"},"PeriodicalIF":2.5,"publicationDate":"2025-06-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143741954","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Development of a polymicrobial host-bacterial interface biofilm model for bacterial vaginosis 细菌性阴道病多微生物宿主-细菌界面生物膜模型的建立。
IF 2.5 3区 生物学
Anaerobe Pub Date : 2025-06-01 Epub Date: 2025-03-08 DOI: 10.1016/j.anaerobe.2025.102952
William Johnston, Ryan Kean
{"title":"Development of a polymicrobial host-bacterial interface biofilm model for bacterial vaginosis","authors":"William Johnston,&nbsp;Ryan Kean","doi":"10.1016/j.anaerobe.2025.102952","DOIUrl":"10.1016/j.anaerobe.2025.102952","url":null,"abstract":"<div><div>Bacterial vaginosis (BV) is characterised by a polymicrobial biofilm forming on the vaginal epithelium. In this study, we have developed a host-pathogen model of BV to replicate disease. We demonstrated tissue colonisation by four key vaginal pathobionts that formed metronidazole tolerant biofilms, with subtle changes in cytotoxicity and inflammation.</div></div>","PeriodicalId":8050,"journal":{"name":"Anaerobe","volume":"93 ","pages":"Article 102952"},"PeriodicalIF":2.5,"publicationDate":"2025-06-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143595977","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
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