Annals of botany最新文献

{"title":"Did Crop Domestication Change the Fitness Landscape of Root Response to Soil Mechanical Impedance? An in-silico Analysis.","authors":"Harini Rangarajan, Jonathan P Lynch","doi":"10.1093/aob/mcae201","DOIUrl":"https://doi.org/10.1093/aob/mcae201","url":null,"abstract":"<p><strong>Background and aims: </strong>Root axes with greater penetration ability are often considered to be beneficial in hard soils. We hypothesized that maize root phenotypes with greater plasticity (meaning reduced elongation in response to mechanical impedance, i.e. a 'stop signal') have fitness advantages over phenotypes with reduced plasticity (i.e. unimpeded root elongation) in native (virgin, uncultivated) soils, by reallocating root foraging to softer, presumably wetter, soil domains, and that the value of the stop signal reduced with soil cultivation and crop domestication.</p><p><strong>Methods: </strong>We used OpenSimRoot to simulate native and cultivated soils and evaluated maize root phenotypes with varying axial and lateral root penetration ability in water, nitrogen, and impedance regimes associated with Neolithic agriculture.</p><p><strong>Key results: </strong>The stop signal was advantageous in native soils but was less beneficial in cultivated, irrigated soils. Reduced root foraging in hard, dry topsoil enabled root growth in deeper domains where water is available, resulting in an improved balance of resource expenditure and acquisition. The value of the stop signal declined during crop domestication with the advent of irrigation, which increased water availability in the topsoil. Soil cultivation reduced N availability, while irrigation increased N leaching, resulting in a shift in the fitness landscape, with greater lateral root length (i.e. reduced plasticity) being advantageous by colocalizing root foraging with N availability. The importance of the stop signal is evident in modern high-input systems in which drought is a limiting factor.</p><p><strong>Conclusions: </strong>Our results support the hypotheses that the reduction of lateral root growth by mechanical impedance is adaptive in native soil, but became less adaptive with soil cultivation and irrigation associated with Neolithic agriculture.</p>","PeriodicalId":8023,"journal":{"name":"Annals of botany","volume":" ","pages":""},"PeriodicalIF":3.6,"publicationDate":"2024-11-27","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142738148","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Functional biogeography of the thermal thresholds for post-dispersal embryo growth in Conopodium majus.","authors":"Cristina Blandino, Brith Natlandsmyr, Sylvi M Sandvik, Hugh W Pritchard, Eduardo Fernández-Pascual","doi":"10.1093/aob/mcae204","DOIUrl":"https://doi.org/10.1093/aob/mcae204","url":null,"abstract":"<p><strong>Background and aims: </strong>Plant regeneration by seeds is driven by a set of physiological traits, many of which show functional intraspecific variation along biogeographic gradients. In many species, germination phenology depends on a germination delay imposed by the need for post-dispersal embryo growth (a.k.a. morphological dormancy). Such growth occurs as a function of environmental temperatures and shows base, optimum and ceiling temperatures (i.e. cardinal temperatures or thermal thresholds). However, the biogeographical variation in such thresholds has not been tested.</p><p><strong>Methods: </strong>We used a thermal time approach and field experiments to assess intraspecific variation at the continental scale in the embryo growth thermal thresholds of the geophyte Conopodium majus (Apiaceae) across its distribution from the Iberian Peninsula to Scandinavia.</p><p><strong>Key results: </strong>Thermal thresholds for embryo growth varied across the latitudinal gradient, with the estimated optimum temperatures between 2.5 and 5.2 ºC, ceiling temperatures between 12 and 20.5 ºC and base temperatures between -6.6 and -2.7 ºC. Germination in the field peaked in the months of January and February. The limiting factor for embryo growth was the ceiling temperature, which was negatively correlated with latitude and the bioclimatic environment of each population. In contrast, the optimal and base temperature were independent of local climate.</p><p><strong>Conclusions: </strong>These results indicate that thermal thresholds for embryo growth are functional ecophysiological traits that drive seed germination phenology and seed responses to soil climatic environment. Therefore, post-dispersal embryo growth can be a key trait impacting climate change effects on phenology and species distributions.</p>","PeriodicalId":8023,"journal":{"name":"Annals of botany","volume":" ","pages":""},"PeriodicalIF":3.6,"publicationDate":"2024-11-23","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142692689","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Correction to: Centromere drive may propel the evolution of chromosome and genome size in plants.","authors":"","doi":"10.1093/aob/mcae200","DOIUrl":"https://doi.org/10.1093/aob/mcae200","url":null,"abstract":"","PeriodicalId":8023,"journal":{"name":"Annals of botany","volume":" ","pages":""},"PeriodicalIF":3.6,"publicationDate":"2024-11-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142643267","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Orchid phylogenetics and evolution: history, current status and prospects.","authors":"John V Freudenstein","doi":"10.1093/aob/mcae202","DOIUrl":"https://doi.org/10.1093/aob/mcae202","url":null,"abstract":"<p><strong>Background: </strong>Orchidaceae are one of the two largest families of angiosperms; they exhibit a host of changes -- morphological, ecological and molecular -- that make them excellent candidates for evolutionary study. Such studies are most effectively performed in a phylogenetic context, which provides direction to character change. Understanding of orchid relationships began in the pre-evolutionary classification systems of the 1800's that were based solely on morphology, and now is largely based on genomic analysis. The resulting patterns have been used to update family classification and to test many evolutionary hypotheses in the family.</p><p><strong>Scope: </strong>Recent analyses with dense sampling and large numbers of nuclear loci have yielded well-supported trees that have confirmed many longstanding hypotheses and overturned others. They are being used to understand evolutionary change and diversification in the family. These include dating the origination of the family, analysis of change in ecological habit (from terrestrial to epiphytic and back again in some cases), revealing significant plastid genome change in leafless holomycotrophs, studying biogeographic patterns in various parts of the world, and interpreting patterns of fungal associations with orchids.</p><p><strong>Conclusion: </strong>Understanding of orchid relationships has progressed significantly in recent decades, especially since DNA sequence data have been available. These data have contributed to an increasingly refined classification of orchids and the pattern has facilitated many studies on character evolution and diversification in the family. Whole genome studies of the family are just beginning and promise to reveal fine-level details underlying structure and function in these plants, and, when set in a phylogenetic context, provide a much richer understanding of how the family has been so successful in diversification.</p>","PeriodicalId":8023,"journal":{"name":"Annals of botany","volume":" ","pages":""},"PeriodicalIF":3.6,"publicationDate":"2024-11-15","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142638043","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"A possible case of adaptive radiation in cycads. A commentary on 'Transcriptome sequencing data provide a solid base to understand the phylogenetic relationships, biogeography and reticulated evolution of the genus Zamia L. (Cycadales: Zamiaceae)'.","authors":"José Said Gutiérrez-Ortega, Juan Carlos Villarreal A","doi":"10.1093/aob/mcae110","DOIUrl":"10.1093/aob/mcae110","url":null,"abstract":"","PeriodicalId":8023,"journal":{"name":"Annals of botany","volume":" ","pages":"i-ii"},"PeriodicalIF":3.6,"publicationDate":"2024-11-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11560363/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141974945","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"The curious case of selenium hyperaccumulation in Coelospermum decipiens from the Cape York Peninsula (Queensland, Australia).","authors":"Maggie-Anne Harvey, Katherine Pinto Irish, Hugh H Harris, Peter D Erskine, Antony van der Ent","doi":"10.1093/aob/mcae103","DOIUrl":"10.1093/aob/mcae103","url":null,"abstract":"<p><strong>Background and aims: </strong>The tropical shrub Coelospermum decipiens (Rubiaceae) is an extreme selenium (Se) hyperaccumulator, reported to accumulate up to 1140 µg Se g-1 when found growing on soils with levels of Se below the limit of detection (i.e. <0.01 mg Se kg-1) leading to a bioconcentration factor of >100 000.</p><p><strong>Methods: </strong>Coelospermum decipiens plants were sampled from different populations in far north Queensland and analysed for Se concentrations. Plant material was subjected to synchrotron X-ray fluorescence microscopy (XFM) and synchrotron X-ray absorption spectroscopy (XAS) investigations to gain insights into the elemental distribution and chemical speciation of Se.</p><p><strong>Results: </strong>The foliar Se concentrations ranged from 100 to 1000 µg Se g-1, except for the seeds, which had up to 28 000 µg Se g-1. The soils from the Hope Vale area were locally Se-enriched up to 48 mg Se kg-1, but there was no relationship between soil and plant Se concentrations. Synchrotron XFM analysis revealed that Se was localized in the blade margin tissue of the younger leaves, whilst the XAS analysis determined that Se occurs as an organo-Se compound.</p><p><strong>Conclusions: </strong>We report the occurrence of seleniferous soils in the Cape York Peninsula soils for the first time, which may partly explain the evolution of Se hyperaccumulation in C. decipiens. The extremely high concentrations of Se in the seeds is suggestive of a herbivory protection function. The capacity of this species to accumulate and hyperaccumulate Se from non-seleniferous soils is akin to that of other 'seed'-based accumulators, such as some members of the Lecythidaceae family.</p>","PeriodicalId":8023,"journal":{"name":"Annals of botany","volume":" ","pages":"769-786"},"PeriodicalIF":3.6,"publicationDate":"2024-11-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11560376/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141445335","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Chia (Salvia hispanica L.), a functional 'superfood': new insights into its botanical, genetic and nutraceutical characteristics.","authors":"Tannaz Zare, Alexandre Fournier-Level, Berit Ebert, Ute Roessner","doi":"10.1093/aob/mcae123","DOIUrl":"10.1093/aob/mcae123","url":null,"abstract":"<p><strong>Background: </strong>Chia (Salvia hispanica L.) seeds have become increasingly popular among health-conscious consumers owing to their high content of ω-3 fatty acids, which provide various health benefits. Comprehensive chemical analyses of the fatty acids and proteins in chia seeds have been conducted, revealing their functional properties. Recent studies have confirmed the high ω-3 content of chia seed oil and have hinted at additional functional characteristics.</p><p><strong>Scope: </strong>This review article aims to provide an overview of the botanical, morphological and biochemical features of chia plants, seeds and seed mucilage. Additionally, we discuss the recent developments in genetic and molecular research on chia, including the latest transcriptomic and functional studies that examine the genes responsible for chia fatty acid biosynthesis. In recent years, research on chia seeds has shifted its focus from studying the physicochemical characteristics and chemical composition of seeds to understanding the metabolic pathways and molecular mechanisms that contribute to their nutritional benefits. This has led to a growing interest in various pharmaceutical, nutraceutical and agricultural applications of chia. In this context, we discuss the latest research on chia and the questions that remain unanswered, and we identify areas that require further exploration.</p><p><strong>Conclusions: </strong>Nutraceutical compounds associated with significant health benefits, including ω-3 polyunsaturated fatty acids, proteins and phenolic compounds with antioxidant activity, have been measured in high quantities in chia seeds. However, comprehensive investigations through both in vitro experiments and in vivo animal and controlled human trials are expected to provide greater clarity on the medicinal, antimicrobial and antifungal effects of chia seeds. The recently published genome of chia and gene-editing technologies, such as CRISPR, facilitate functional studies deciphering molecular mechanisms of biosynthesis and metabolic pathways in this crop. This necessitates development of stable transformation protocols and creation of a publicly available lipid database, mutant collection and large-scale transcriptomic datasets for chia.</p>","PeriodicalId":8023,"journal":{"name":"Annals of botany","volume":" ","pages":"725-746"},"PeriodicalIF":3.6,"publicationDate":"2024-11-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11560377/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141854578","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Correction to: Functional analysis of the heterotrimeric NF-Y transcription factor complex in cassava disease resistance.","authors":"","doi":"10.1093/aob/mcae134","DOIUrl":"10.1093/aob/mcae134","url":null,"abstract":"","PeriodicalId":8023,"journal":{"name":"Annals of botany","volume":" ","pages":"919-921"},"PeriodicalIF":3.6,"publicationDate":"2024-11-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11560364/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142016133","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Effects of atmospheric CO2 concentration on transpiration and leaf elongation responses to drought in Triticum aestivum, Lolium perenne and Festuca arundinacea.","authors":"Victoria Acker, Jean-Louis Durand, Cédric Perrot, Eric Roy, Elzbieta Frak, Romain Barillot","doi":"10.1093/aob/mcae114","DOIUrl":"10.1093/aob/mcae114","url":null,"abstract":"<p><strong>Background and aims: </strong>Leaf elongation is vital for productivity of Poaceae species, influenced by atmospheric CO2 concentration ([CO2]) and climate-induced water availability changes. Although [CO2] mitigates the effects of drought on reducing transpiration per unit leaf area, it also increases total leaf area and water use. These complex interactions associated with leaf growth pose challenges in anticipating climate change effects. This study aims to assess [CO2] effects on leaf growth response to drought in perennial ryegrass (Lolium perenne), tall fescue (Festuca arundinacea) and wheat (Triticum aestivum).</p><p><strong>Methods: </strong>Plants were cultivated in growth chambers with [CO2] at 200 or 800 ppm. At leaf six to seven unfolding, half of the plants were subjected to severe drought treatment. Leaf elongation rate (LER) was measured daily, whereas plant transpiration was continuously recorded gravimetrically. Additionally, water-soluble carbohydrate (WSC) content along with water and osmotic potentials in the leaf growing zone were measured at drought onset, mid-drought and leaf growth cessation.</p><p><strong>Key results: </strong>Elevated [CO2] mitigated drought impacts on LER and delayed growth cessation across species. A positive correlation between LER and soil relative water content (SRWC) was observed. At the same SRWC, perennial grasses exhibited a higher LER with elevated [CO2], probably due to enhanced stomatal regulation. Despite stomatal closure and WSC accumulation, CO2 did not influence nighttime water potential or osmotic potential. The marked increase in leaf area across species resulted in similar (wheat and tall fescue) or higher (ryegrass) total water use by the end of the experiment, under both watered and unwatered conditions.</p><p><strong>Conclusions: </strong>Elevated [CO2] mitigates the adverse effects of drought on leaf elongation in three Poaceae species, due to its impact on plant transpiration. Overall, these findings provide valuable insights into CO2 and drought interactions that may help anticipate plant responses to climate change.</p>","PeriodicalId":8023,"journal":{"name":"Annals of botany","volume":" ","pages":"787-802"},"PeriodicalIF":3.6,"publicationDate":"2024-11-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11560373/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141858884","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Transcriptome sequencing data provide a solid base to understand the phylogenetic relationships, biogeography and reticulated evolution of the genus Zamia L. (Cycadales: Zamiaceae).","authors":"Anders Lindstrom, Sadaf Habib, Shanshan Dong, Yiqing Gong, Jian Liu, Michael Calonje, Dennis Stevenson, Shouzhou Zhang","doi":"10.1093/aob/mcae065","DOIUrl":"10.1093/aob/mcae065","url":null,"abstract":"<p><strong>Background and aims: </strong>Cycads are a key lineage to understand the early evolution of seed plants and their response to past environmental changes. However, tracing the evolutionary trajectory of cycad species is challenging when the robust relationships at inter- or infrageneric level are not well resolved.</p><p><strong>Methods: </strong>Here, using 2901 single-copy nuclear genes, we explored the species relationships and gene flow within the second largest genus of cycads, i.e. Zamia, based on phylotranscriptomic analyses of 90 % extant Zamia species. Based on a well-resolved phylogenetic framework, we performed gene flow analyses, molecular dating and biogeographical reconstruction to examine the spatiotemporal evolution of Zamia. We also performed ancestral state reconstruction of a total of 62 traits of the genus to comprehensively investigate its morphological evolution.</p><p><strong>Key results: </strong>Zamia comprises seven major clades corresponding to seven distinct distribution areas in the Americas, with at least three reticulation nodes revealed in this genus. Extant lineages of Zamia initially diversified around 18.4-32.6 (29.14) million years ago in Mega-Mexico, and then expanded eastward into the Caribbean and southward into Central and South America. Ancestral state reconstruction revealed homoplasy in most of the morphological characters.</p><p><strong>Conclusions: </strong>This study revealed congruent phylogenetic relationships from comparative methods/datasets, with some conflicts being the result of incomplete lineage sorting and ancient/recent hybridization events. The strong association between the clades and the biogeographic areas suggested that ancient dispersal events shaped the modern distribution pattern, and regional climatic factors may have resulted in the following in situ diversification. Climate cooling starting during the mid-Miocene is associated with the global expansion of Zamia to tropical South America that has dramatically driven lineage diversification in the New World flora, as well as the extinction of cycad species in the nowadays cooler regions of both hemispheres, as indicated by the fossil records.</p>","PeriodicalId":8023,"journal":{"name":"Annals of botany","volume":" ","pages":"747-768"},"PeriodicalIF":3.6,"publicationDate":"2024-11-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11560380/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141431235","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}