Advances in Virology最新文献

筛选
英文 中文
Occurrence of Enteric Viruses in Surface Water and the Relationship with Changes in Season and Physical Water Quality Dynamics. 地表水中肠道病毒的发生及其与季节变化和水质物理动态的关系
IF 2.2
Advances in Virology Pub Date : 2020-07-03 eCollection Date: 2020-01-01 DOI: 10.1155/2020/9062041
Wasonga Michael Opere, Maingi John, Omwoyo Ombori
{"title":"Occurrence of Enteric Viruses in Surface Water and the Relationship with Changes in Season and Physical Water Quality Dynamics.","authors":"Wasonga Michael Opere,&nbsp;Maingi John,&nbsp;Omwoyo Ombori","doi":"10.1155/2020/9062041","DOIUrl":"https://doi.org/10.1155/2020/9062041","url":null,"abstract":"<p><p>Environmental water quality issues have dominated global discourse and studies over the past five decades. Significant parameters of environmental water quality include changes in biological and physical parameters. Some of the biological parameters of significance include occurrence of enteric viruses. Enteric viruses can affect both human and animal's health by causing diseases such as gastrointestinal and respiratory infections. In this study, the relationship between the occurrence of enteric viruses with reference to adenoviruses and enteroviruses and the physical water quality characteristics was assessed from water samples collected from Lake Victoria (LV) in Kenya. In order to understand the dynamics of season driven enteric viruses' contamination of the lake waters, we additionally analysed seasonal behavior of the lake's catchment area in terms of rainfall effects. Physical quality parameters were measured on-site while viral analysis was carried out by molecular methods using the nested polymerase chain reaction (nPCR). From 216 samples that were analysed for viral contamination, enteric viral genomes were discovered in 18 (8.3%) of the samples. Out of half of the samples (108) collected during the rainy season, enteric viral genomes were detected in 9.26% (10) while 8 (7.41%) samples tested positive from the other half of the samples (108) collected during the dry season. There was, however, no significant correlation noted between the physical water quality characteristics and the enteric viruses' occurrence. Neither wet season nor dry season was significantly associated with the prevalence of the viruses. In Lake Victoria waters, most of the samples had an average of physical water quality parameters that were within the range accepted by the World Health Organization (WHO) for surface waters with exemption of turbidity which was above the recommended 5 NTU as recorded from some sampling sites. Continuous and long-term surveillance of the lake water to accurately monitor the contaminants and possible correlation between chemical, physical, and biological characteristics is recommended. This would be important in continuous understanding of the hydrological characteristics changes of the lake for proper management of its quality with reference to the WHO standards. A multiple varied-sampling approach in different geographical regions during different seasons is recommended to establish the geographical distribution and relatedness to seasonal distribution patterns of the viruses. The data generated from this study will be useful in providing a basis for assessment of seasonally driven fecal pollution load of the lake and enteric virus contamination for proper management of the sanitary situation around the lake.</p>","PeriodicalId":7473,"journal":{"name":"Advances in Virology","volume":"2020 ","pages":"9062041"},"PeriodicalIF":2.2,"publicationDate":"2020-07-03","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1155/2020/9062041","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"38186129","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 8
Molecular Characterization of Norovirus Strains Isolated from Older Children and Adults in Impoverished Communities of Vhembe District, South Africa. 南非Vhembe地区贫困社区大龄儿童和成人诺如病毒分离株的分子特征
IF 2.2
Advances in Virology Pub Date : 2020-06-29 eCollection Date: 2020-01-01 DOI: 10.1155/2020/8436951
G Mulondo, R Khumela, J P Kabue, A N Traore, N Potgieter
{"title":"Molecular Characterization of Norovirus Strains Isolated from Older Children and Adults in Impoverished Communities of Vhembe District, South Africa.","authors":"G Mulondo,&nbsp;R Khumela,&nbsp;J P Kabue,&nbsp;A N Traore,&nbsp;N Potgieter","doi":"10.1155/2020/8436951","DOIUrl":"https://doi.org/10.1155/2020/8436951","url":null,"abstract":"<p><strong>Background: </strong>Human norovirus (NoV) is an etiological agent associated with acute gastroenteritis (AGE) in both children and adults worldwide. However, very few studies have been reported on the prevalence and genetic diversity of NoV strains in children older than 5 years of age and adults with little or inadequate water and sanitation conditions.</p><p><strong>Objectives: </strong>The aim of this study was assessing the prevalence of the human norovirus in older children and adults suffering with diarrhoea from rural communities in the Vhembe district, Limpopo province.</p><p><strong>Methods: </strong>Between August 2017 and October 2018, stool samples were collected from outpatients suffering from AGE and screened for NoV strains using the RIDA©GENE norovirus I and II real-time one-step RT-PCR. RNA extracts of NoV-positive samples were subjected to RT-PCR amplification and nucleotide sequencing to genotype the positive NoV strains.</p><p><strong>Results: </strong>Out of 80 collected stool samples, 13 (16%) were tested positive for norovirus. Genogroup GII was identified in 6/13 (46%) samples and genogroup GI in 7/13 (54%) samples. The sequence analyses showed multiple genotypes including GII.Pg, GII.1, GII.2, GII.4, and GI.3. Phylogenetic analysis revealed the relatedness of NoV genotypes identified with other strains reported globally.</p><p><strong>Conclusion: </strong>Continued systematic surveillance to evaluate norovirus association with diarrhoea is needed to assist with epidemiological surveillance and disease burden in people of all the age groups.</p>","PeriodicalId":7473,"journal":{"name":"Advances in Virology","volume":"2020 ","pages":"8436951"},"PeriodicalIF":2.2,"publicationDate":"2020-06-29","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1155/2020/8436951","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"38176955","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 5
Dysregulation in Plasma ω3 Fatty Acids Concentration and Serum Zinc in Heavy Alcohol-Drinking HCV Patients. 重度饮酒HCV患者血浆ω3脂肪酸浓度和血清锌的失调。
IF 2.2
Advances in Virology Pub Date : 2020-06-09 eCollection Date: 2020-01-01 DOI: 10.1155/2020/7835875
Vatsalya Vatsalya, Ruchita Agrawal, Jane Frimodig, Shweta Srivastava, Melanie L Schwandt
{"title":"Dysregulation in Plasma <i>ω</i>3 Fatty Acids Concentration and Serum Zinc in Heavy Alcohol-Drinking HCV Patients.","authors":"Vatsalya Vatsalya,&nbsp;Ruchita Agrawal,&nbsp;Jane Frimodig,&nbsp;Shweta Srivastava,&nbsp;Melanie L Schwandt","doi":"10.1155/2020/7835875","DOIUrl":"https://doi.org/10.1155/2020/7835875","url":null,"abstract":"<p><p>Alcohol use disorder (AUD) patients comorbid with hepatitis C virus (HCV) infection (HCV + AUD) could have progressively severe clinical sequels of liver injury and inflammation. Serum zinc and several polyunsaturated fatty acids (PUFAs) get dysregulated in AUD as well as HCV. However, the extent of dysregulation of PUFAs and zinc deficiency and their interaction in HCV + AUD as a comorbid pathology has not been studied. We examined the role of dysregulation of FAs and low zinc in HCV + AUD patients. 138 male and female participants aged 21-67 years were grouped as HCV-only (Gr. 1; <i>n</i> = 13), HCV + AUD (Gr. 2; <i>n</i> = 25), AUD without liver injury (Gr. 3; <i>n</i> = 37), AUD with liver injury (Gr. 4; <i>n</i> = 51), and healthy volunteers (Gr. 5 or HV; <i>n</i> = 12). Drinking history, individual demographic measures, fasting fatty acids, liver function, and zinc were measured and analyzed. HCV + AUD patients showed the highest ALT level compared to the rest of the groups. Serum zinc concentrations were the lowest, and the proinflammatory shift was the highest (characterized by <i>ω</i>6 : <i>ω</i>3 ratio) in the HCV + AUD patients. Total <i>ω</i>3, eicosapentaenoic acid (EPA), and docosapentaenoic acid (DPA5,3) were the lowest in HCV + AUD patients. Total <i>ω</i>3, <i>α</i>-linoleic acid (<i>α</i>-LA) along with covariable number of drinking days past 90 days (NDD90), eicosapentaenoic acid (EPA), and docosapentaenoic acid (DPA5,3) independently showed significant association with low zinc in the HCV + AUD patients. Heavy drinking pattern showed that NDD90 has a significant mediating role in the representation of the relationship between candidate <i>ω</i>3 PUFAs and zinc uniquely in the HCV + AUD patients. Low serum zinc showed a distinctively stronger association with total and candidate <i>ω</i>3s in the HCV + AUD patients compared to the patients with HCV or AUD alone, supporting dual mechanism involved in the exacerbation of the proinflammatory response in this comorbid cohort. This trial is registered with NCT#00001673.</p>","PeriodicalId":7473,"journal":{"name":"Advances in Virology","volume":"2020 ","pages":"7835875"},"PeriodicalIF":2.2,"publicationDate":"2020-06-09","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1155/2020/7835875","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"38067765","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 3
Molecular Diagnosis of Pneumonia Using Multiplex Real-Time PCR Assay RespiFinder® SMART 22 FAST in a Group of Moroccan Infants. 在一组摩洛哥婴儿中使用多重实时荧光定量PCR检测RespiFinder®SMART 22 FAST进行肺炎的分子诊断
IF 2.2
Advances in Virology Pub Date : 2020-02-18 eCollection Date: 2020-01-01 DOI: 10.1155/2020/6212643
Kenza Hattoufi, Houssain Tligui, Majdouline Obtel, Sobha El Ftouh, Aicha Kharbach, Amina Barkat
{"title":"Molecular Diagnosis of Pneumonia Using Multiplex Real-Time PCR Assay RespiFinder® SMART 22 FAST in a Group of Moroccan Infants.","authors":"Kenza Hattoufi,&nbsp;Houssain Tligui,&nbsp;Majdouline Obtel,&nbsp;Sobha El Ftouh,&nbsp;Aicha Kharbach,&nbsp;Amina Barkat","doi":"10.1155/2020/6212643","DOIUrl":"https://doi.org/10.1155/2020/6212643","url":null,"abstract":"<p><strong>Background: </strong>In Morocco, pediatric pneumonia remains a serious public health problem, as it constitutes the first cause of mortality due to infectious diseases. The etiological diagnosis of acute respiratory tract infections is difficult. Therefore, it is necessary to use Multiplex real-time polymerase chain reaction assay tests in a routine setting for exact and fast identification.</p><p><strong>Objectives: </strong>In this paper, we present the clinical results of pediatric pneumonia and describe their etiology by using molecular diagnosis. <i>Study design</i>: Tracheal secretion was collected from infants presenting respiratory distress isolated or associated with systemic signs, attending the unit of Neonatology between December 1, 2016, and Mai 31, 2018. Samples were tested with the multiplex RespiFinder® SMART 22 FAST which potentially detects 18 viruses and 4 bacteria.</p><p><strong>Results: </strong>Of the 86 infants considered in this study (mean age 31 ± 19 days) suspected of acute respiratory tract infections, 71 (83%) were positive for one or multiple viruses or/and bacteria. The majority of acute respiratory tract infections had a viral origin (95%): respiratory syncytial viruses (A and B) (49%), rhinovirus (21%), coronaviruses 229E (11%), humain metapneumovirus (5%), influenza A (3%), influenza H1N1 (1%), adenovirus (2%), and parainfluenza virus type 4 (2%). Among our patients, 6% had <i>Mycoplasma pneumoniae</i>. Coinfections were not associated with severe respiratory symptoms.</p><p><strong>Conclusion: </strong>The clinical spectrum of respiratory infections is complex and often nonspecific. Thus, the early and fast detection of related causative agents is crucial. The use of multiplex real time polymerase chain reaction may help choose an accurate treatment, reduce the overall use of unnecessary antibiotics, preserve intestinal flora, and decrease nosocomial infection by reducing the length of hospitalization.</p>","PeriodicalId":7473,"journal":{"name":"Advances in Virology","volume":"2020 ","pages":"6212643"},"PeriodicalIF":2.2,"publicationDate":"2020-02-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1155/2020/6212643","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"37716726","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 5
Inhibitory Activity of Illicium verum Extracts against Avian Viruses. 八角提取物对禽流感病毒的抑制活性研究。
IF 2.2
Advances in Virology Pub Date : 2020-01-25 eCollection Date: 2020-01-01 DOI: 10.1155/2020/4594635
Mohammed S Alhajj, Mahmood A Qasem, Saud I Al-Mufarrej
{"title":"Inhibitory Activity of <i>Illicium verum</i> Extracts against Avian Viruses.","authors":"Mohammed S Alhajj,&nbsp;Mahmood A Qasem,&nbsp;Saud I Al-Mufarrej","doi":"10.1155/2020/4594635","DOIUrl":"https://doi.org/10.1155/2020/4594635","url":null,"abstract":"<p><p>This study aimed at screening the inhibitory activity of <i>Illicium verum</i> extracts against avian reovirus, infectious bursal disease virus (IBDV), Newcastle disease virus (NDV), and infectious laryngotracheitis virus (ILTV). The cytotoxic and antiviral actions of 3 extracts, absolute methanol (100MOH), 50% methanol (50MOH), and aqueous extracts (WA.), were evaluated by MTT assay. The <i>Illicium verum</i> extracts were added to the cultured chick embryo fibroblast (CEF) with tested viruses in three attacks, preinoculation, postinoculation, and simultaneous inoculation. The three extracts showed antiviral inhibitory activity against all tested viruses during simultaneous inoculation and preinoculation except 100MOH and 50MOH that showed no effect against IBDV, thereby suggesting that the extracts have a preventive effect on CEF against viruses. During postinoculation, the extracts exhibited inhibitory effects against NDV and avian reovirus, while no effect against IBDV recorded and only the 100MOH showed an inhibitory effect against ILTV. The initial results of this study suggest that <i>Illicium verum</i> may be a candidate for a natural alternative source for antiviral agents.</p>","PeriodicalId":7473,"journal":{"name":"Advances in Virology","volume":"2020 ","pages":"4594635"},"PeriodicalIF":2.2,"publicationDate":"2020-01-25","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1155/2020/4594635","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"37939655","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 7
Comparison of the Immunogenicity and Safety of Two Pediatric TBE Vaccines Based on the Far Eastern and European Virus Subtypes. 基于远东和欧洲病毒亚型的两种小儿结核菌素疫苗的免疫原性和安全性比较。
IF 2.2
Advances in Virology Pub Date : 2019-12-24 eCollection Date: 2019-01-01 DOI: 10.1155/2019/5323428
Mikhail F Vorovitch, Galina B Maikova, Liubov L Chernokhaeva, Victor V Romanenko, Galina G Karganova, Aydar A Ishmukhametov
{"title":"Comparison of the Immunogenicity and Safety of Two Pediatric TBE Vaccines Based on the Far Eastern and European Virus Subtypes.","authors":"Mikhail F Vorovitch, Galina B Maikova, Liubov L Chernokhaeva, Victor V Romanenko, Galina G Karganova, Aydar A Ishmukhametov","doi":"10.1155/2019/5323428","DOIUrl":"10.1155/2019/5323428","url":null,"abstract":"<p><p>Up to 10,000 cases of tick-borne encephalitis are registered annually, 20% of which occur in children under 17 years of age. A comparison of the immunogenicity and safety between a new pediatric Tick-E-Vac vaccine based on the TBEV strain Sofjin and FSME-IMMUN Junior vaccine was performed in the Sverdlovsk region. The vaccine strains differ from strains of the Siberian subtype of TBEV that dominates in the region. The study was performed on 163 children aged 1 to 15, who received one of the vaccines according to either a conventional or rapid vaccination schedule. Immunogenicity was assessed based on the seroprotection rates and titers of virus-neutralizing antibodies. There were no significant differences in either the immunogenicity or reactogenicity of the pediatric vaccines based on strains of the Far Eastern or European subtypes of TBEV. Under both vaccination schedules, 30 days after the second injection, seroprotection rates were 100% for Tick-E-Vac and greater than 95% for FSME-IMMUN Junior, while the geometric mean titer of TBEV-neutralizing antibodies was at least 2,4 log<sub>10</sub> (1 : 250) for either vaccine. Fourteen days after the second injection according to the rapid schedule, seroprotection rates were significantly lower, ranging from 50% to 63% regardless of the vaccine used. The observed adverse reactions were mild or moderate for both vaccines under both vaccination schedules, with total adverse event rates of less than 25%. Reactogenicity was not associated with the gender or age of the recipients. There were no statistically significant differences in the incidence of adverse reactions between the group of subjects who were baseline seronegative or seropositive. However, 14 days after the second vaccine injection according to the rapid schedule, a statistically significant difference in nAbs titers was identified between groups of children with and without reported reactions.</p>","PeriodicalId":7473,"journal":{"name":"Advances in Virology","volume":"2019 ","pages":"5323428"},"PeriodicalIF":2.2,"publicationDate":"2019-12-24","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6942698/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"37538254","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Analysis of Nucleotide Alterations in the E6 Genomic Region of Human Papillomavirus Types 6 and 11 in Condyloma Acuminatum Samples from Brazil. 巴西尖锐湿疣样本中人类乳头瘤病毒6型和11型E6基因组区核苷酸变化的分析。
IF 2.2
Advances in Virology Pub Date : 2019-05-02 eCollection Date: 2019-01-01 DOI: 10.1155/2019/5697573
Marina Carrara Dias, Bruna Stuqui, Paola Jocelan Scarin Provazzi, Cíntia Bittar, Natália Maria Candido, Renata Prandini Adum de Matos, Rodolfo Miglioli Badial, Caroline Measso do Bonfim, Patricia Pereira Dos Santos Melli, Silvana Maria Quintana, José Antônio Cordeiro, Paula Rahal, Marilia de Freitas Calmon
{"title":"Analysis of Nucleotide Alterations in the E6 Genomic Region of Human Papillomavirus Types 6 and 11 in Condyloma Acuminatum Samples from Brazil.","authors":"Marina Carrara Dias,&nbsp;Bruna Stuqui,&nbsp;Paola Jocelan Scarin Provazzi,&nbsp;Cíntia Bittar,&nbsp;Natália Maria Candido,&nbsp;Renata Prandini Adum de Matos,&nbsp;Rodolfo Miglioli Badial,&nbsp;Caroline Measso do Bonfim,&nbsp;Patricia Pereira Dos Santos Melli,&nbsp;Silvana Maria Quintana,&nbsp;José Antônio Cordeiro,&nbsp;Paula Rahal,&nbsp;Marilia de Freitas Calmon","doi":"10.1155/2019/5697573","DOIUrl":"10.1155/2019/5697573","url":null,"abstract":"<p><p>Condyloma acuminata (CA), or genital warts, are benign proliferative epidermal or mucous lesions that are caused by infection with human papillomavirus (HPV), mainly the low-risk types 6 and 11. HPV variants are defined as viral sequences that share identity in the nucleotide sequence of the L1 gene greater than 98%. Based on this criterion, HPV6 and 11 variant lineages have been studied, and there are ongoing attempts to correlate these genetic variants with different clinical findings of infection. Therefore, the aims of this study were to detect variants and nucleotide alterations present in the E6 regions of HPV types 6 and 11 found in CA samples, to correlate the HPV presence with the clinical-pathological data of the patients, and to determine phylogenetic relationships with variants from other places in the world. The E6 regions of 25 HPV6 samples and 7 HPV11 samples from CA were amplified using PCR with specific primers. The products were ligated to a cloning vector and five colonies of each sample were sequenced to observe the nucleotide alterations. Twelve samples were identified as the HPV6B3 variant, presenting the mutation (guanine) G474A (adenine), and one of them also showed the mutation (thymine) T369G. The other 13 patients were positive for HPV6B1 without nucleotide alterations. In the analysis of the HPV11 samples, all patients showed the mutations T137C and (cytosine) C380T. One patient also presented the nucleotide alteration T410C. None of the mutations found in the 32 analyzed samples resulted in amino acid changes. Patient age, local occurrence, and HIV infection did not show significant association with HPV infection. Besides, the data found in this study did not show a relationship with the geographical region of isolation when compared to other data from different regions of the world. In this way, despite the nucleotide alterations found, it was not possible to observe amino acid changes and variants grouping according to geographical region.</p>","PeriodicalId":7473,"journal":{"name":"Advances in Virology","volume":"2019 ","pages":"5697573"},"PeriodicalIF":2.2,"publicationDate":"2019-05-02","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1155/2019/5697573","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"37318599","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 2
Molecular Characterization of African Swine Fever Viruses from Outbreaks in Peri-Urban Kampala, Uganda. 乌干达坎帕拉城郊暴发的非洲猪瘟病毒的分子特征
IF 2.2
Advances in Virology Pub Date : 2019-04-01 eCollection Date: 2019-01-01 DOI: 10.1155/2019/1463245
Frank Norbert Mwiine, Joseph Nkamwesiga, Christian Ndekezi, Sylvester Ochwo
{"title":"Molecular Characterization of African Swine Fever Viruses from Outbreaks in Peri-Urban Kampala, Uganda.","authors":"Frank Norbert Mwiine,&nbsp;Joseph Nkamwesiga,&nbsp;Christian Ndekezi,&nbsp;Sylvester Ochwo","doi":"10.1155/2019/1463245","DOIUrl":"https://doi.org/10.1155/2019/1463245","url":null,"abstract":"<p><p>African swine fever (ASF) is an infectious transboundary disease of domestic pigs and wild swine and is currently the most serious constraint to piggery in Uganda. The causative agent of ASF is a large double-stranded linear DNA virus with a complex structure. There are twenty-four ASFV genotypes described to date; however, in Uganda, only genotypes IX and X have been previously described. Inadequate ASF outbreak investigation has contributed to the delayed establishment of effective interventions to aid the control of ASF. Continuous virus characterization enhances the understanding of ASF epidemiology in terms of viral genome variations, extent, severity, and the potential source of the viruses responsible for outbreaks. We collected samples from pigs that had died of a hemorrhagic disease indicative of ASF. DNA was extracted from all samples and screened with the OIE recommended diagnostic PCR for ASF. Partial B646L (p72), full-length E183L (p54) genes, and CVR region of the P72 gene were amplified, purified, and sequenced. Web-based BLAST and MEGA X software were used for sequence analysis. ASF was confirmed in 10 of the 15 suspected pig samples. Phylogenetic analysis confirmed circulation of genotype IX by both full-length E183 (p54) and partial B646L (p72) gene sequencing. Intragenotypic resolution of the CVR region revealed major deletions in the virus genome, in some isolates of this study. The marked reduction in the number of tetrameric tandem repeats in some isolates of this study could potentially play a role in influencing the virulence of this particular genotype IX in Uganda.</p>","PeriodicalId":7473,"journal":{"name":"Advances in Virology","volume":"2019 ","pages":"1463245"},"PeriodicalIF":2.2,"publicationDate":"2019-04-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1155/2019/1463245","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"37377077","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 23
Epstein-Barr Virus- (EBV-) Immortalized Lymphoblastoid Cell Lines (LCLs) Express High Level of CD23 but Low CD27 to Support Their Growth. eb病毒(EBV)永生化淋巴母细胞样细胞系(LCLs)表达高水平CD23而低水平CD27以支持其生长。
IF 2.2
Advances in Virology Pub Date : 2019-03-28 eCollection Date: 2019-01-01 DOI: 10.1155/2019/6464521
Hooi-Yeen Yap, Thin-Sam Siow, Sook-Khuan Chow, Sin-Yeang Teow
{"title":"Epstein-Barr Virus- (EBV-) Immortalized Lymphoblastoid Cell Lines (LCLs) Express High Level of CD23 but Low CD27 to Support Their Growth.","authors":"Hooi-Yeen Yap,&nbsp;Thin-Sam Siow,&nbsp;Sook-Khuan Chow,&nbsp;Sin-Yeang Teow","doi":"10.1155/2019/6464521","DOIUrl":"https://doi.org/10.1155/2019/6464521","url":null,"abstract":"<p><p>Epstein-Barr virus (EBV) is one of the common human herpesvirus types in the world. EBV is known to infect more than 95% of adults in the world. The virus mainly infects B lymphocytes and could immortalize and transform the cells into EBV-bearing lymphoblastoid cell lines (LCLs). Limited studies have been focused on characterizing the surface marker expression of the immortalized LCLs. This study demonstrates the generation of 15 LCLs from sixteen rheumatoid arthritis (RA) patients and a healthy volunteer using B95-8 marmoset-derived EBV. The success rate of LCL generation was 88.23%. All CD19+ LCLs expressed CD23 (16.94-58.9%) and CD27 (15.74-80.89%) on cell surface. Our data demonstrated two distinct categories of LCLs (fast- and slow-growing) (<i>p</i><0.05) based on their doubling time. The slow-growing LCLs showed lower CD23 level (35.28%) compared to fast-growing LCLs (42.39%). In contrast, the slow-growing LCLs showed higher percentage in both CD27 alone and CD23+CD27+ in combination. Overall, these findings may suggest the correlations of cellular CD23 and CD27 expression with the proliferation rate of the generated LCLs. Increase expression of CD23 may play a role in EBV immortalization of B-cells and the growth and maintenance of the EBV-transformed LCLs while CD27 expression might have inhibitory effects on LCL proliferation. Further investigations are warranted to these speculations.</p>","PeriodicalId":7473,"journal":{"name":"Advances in Virology","volume":"2019 ","pages":"6464521"},"PeriodicalIF":2.2,"publicationDate":"2019-03-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1155/2019/6464521","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"37206799","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 4
Poly-ADP Ribosyl Polymerase 1 (PARP1) Regulates Influenza A Virus Polymerase. 聚adp核糖基聚合酶1 (PARP1)调控甲型流感病毒聚合酶
IF 2.2
Advances in Virology Pub Date : 2019-03-19 eCollection Date: 2019-01-01 DOI: 10.1155/2019/8512363
Liset Westera, Alisha M Jennings, Jad Maamary, Martin Schwemmle, Adolfo García-Sastre, Eric Bortz
{"title":"Poly-ADP Ribosyl Polymerase 1 (PARP1) Regulates Influenza A Virus Polymerase.","authors":"Liset Westera,&nbsp;Alisha M Jennings,&nbsp;Jad Maamary,&nbsp;Martin Schwemmle,&nbsp;Adolfo García-Sastre,&nbsp;Eric Bortz","doi":"10.1155/2019/8512363","DOIUrl":"https://doi.org/10.1155/2019/8512363","url":null,"abstract":"<p><p>Influenza A viruses (IAV) are evolutionarily successful pathogens, capable of infecting a number of avian and mammalian species and responsible for pandemic and seasonal epidemic disease in humans. To infect new species, IAV typically must overcome a number of species barriers to entry, replication, and egress, even while virus replication is counteracted by antiviral host factors and innate immune mechanisms. A number of host factors have been found to regulate the replication of IAV by interacting with the viral RNA-dependent RNA polymerase (RdRP). The host factor PARP1, a poly-ADP ribosyl polymerase, was required for optimal functions of human, swine, and avian influenza RdRP in human 293T cells. In IAV infection, PARP1 was required for efficient synthesis of viral nucleoprotein (NP) in human lung A549 cells. Intriguingly, pharmacological inhibition of PARP1 enzymatic activity (PARylation) by 4-amino-1,8-naphthalimide led to a 4-fold increase in RdRP activity, and a 2.3-fold increase in virus titer. Exogenous expression of the natural PARylation inhibitor PARG also enhanced RdRP activity. These data suggest a virus-host interaction dynamic where PARP1 protein itself is required, but cellular PARylation has a distinct suppressive modality, on influenza A viral polymerase activity in human cells.</p>","PeriodicalId":7473,"journal":{"name":"Advances in Virology","volume":"2019 ","pages":"8512363"},"PeriodicalIF":2.2,"publicationDate":"2019-03-19","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1155/2019/8512363","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"37180723","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 11
0
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
确定
请完成安全验证×
相关产品
×
本文献相关产品
联系我们:info@booksci.cn Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。 Copyright © 2023 布克学术 All rights reserved.
京ICP备2023020795号-1
ghs 京公网安备 11010802042870号
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术官方微信