Fungal systematics and evolution最新文献

{"title":"Figure S1","authors":"N. Davoodian","doi":"10.3114/fuse.2021.08.06_supp1","DOIUrl":"https://doi.org/10.3114/fuse.2021.08.06_supp1","url":null,"abstract":"Fig. S1. Overview Phylogram from Bayesian analysis showing relationship between Hysterangiales, some Phallales and outgroups (OG). Node A indicates Phallogastrineae subord. nov.; node B indicates Hysterangineae subord. nov. Maximum likelihood (ML) bootstrap values / Bayesian posterior probabilities (bpp) are shown at the nodes. Where bpp ≥ 0.95 and ML bootstrap ≥ 70 %, branches are thickened. Type species indicated by a blue asterisk *. The asterisk in parentheses (*) denotes the currently accepted genus for Protubera canescens, Ileodictyon. Countries and States indicated with same acronyms as Fig. 3. Terminals representing new DNA sequences generated for this study are in bold.","PeriodicalId":73121,"journal":{"name":"Fungal systematics and evolution","volume":"1 1","pages":""},"PeriodicalIF":0.0,"publicationDate":"2021-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"82327371","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Fig. S1 & Tables S1-S4","authors":"E. De Crop","doi":"10.3114/fuse.2021.07.07_supp1","DOIUrl":"https://doi.org/10.3114/fuse.2021.07.07_supp1","url":null,"abstract":"Figure S1. Overview map of the biogeographical regions used for Table 1. Biogeographic regions are based on biogeographic realms (https://ecoregions2017.appspot.com/), with three major differences: Western Palearctic (Western part of the Palearctic realm), Asia (Eastern part of the Palearctic realm combined with the Indo-Malay realm), and Australasia (Australasian realm combined with the Oceanian realm). The Palearctic realm was spilt into Western Palearctic and Eastern Palearctic, Eastern Palearctic and the Indo-Malay realm form together the Asia region, and the Australasian realm is combined with the Oceania realm to form the Australasian region.Table S1. List of described Lactifluus species, together with the year of description, taxonomical classification (subgenus, section), the indication of how this taxonomical position was defined, the source(s) of this classification, and notes.Table S2. Extra information on the preliminary study of metabarcoding data of the genus Lactifluus, retrieved from the GlobalFungi website.Table S3. Overview of the results of the preliminary study of metabarcoding data of the genus Lactifluus, retrieved from the GlobalFungi website. Due to the generally shorter length and lower quality of environmental sequence data, the numbers in the table are to be considered an estimate.Table S4. List of the putative new species found in the environmental sequences. References of studies cited are given in S3.","PeriodicalId":73121,"journal":{"name":"Fungal systematics and evolution","volume":"66 1","pages":""},"PeriodicalIF":0.0,"publicationDate":"2021-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"73085692","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Figs S1-S4 & Table S1","authors":"J. Mack","doi":"10.3114/fuse.2021.07.09_supp1","DOIUrl":"https://doi.org/10.3114/fuse.2021.07.09_supp1","url":null,"abstract":"Figure S1. Mean conidial dimensions (with error bars representing standard error) for all herbarium specimens and cultures examined, with the holotype of H. fragiforme represented by orange bars and the holotype of H. callorioides represented by green bars.Figure S2. Lectotype of H. fragiformis (A, C, E) and holotype of H. callorioides (B, D, F). A, B. Rehydrated sporodochia. C−F. Conidial chains. Scale bars: A, B = 500 μm. C−F = 10 μm.Figure S3. Conidia and conidial chains. A. Oosporidium sp. (DAOM 970823) identified using DNA sequencing. B. Holotype of Sphaerocolla aurantiaca (H). Both have similar conidial morphology and dimensions, suggesting that S. aurantiaca may be conspecific with Oosporidium margaritiferum. Scale bar = 10 μm. Figure S4. Nuclear staining of hyphae of DAOMC 251988, showing dikaryotic, binucleate hyphae, A, using near-UV light showing the stained nuclei and B with regular light. Scale bar = 20 μm. Table S1. Species, geographical location, host and herbaria for known type specimens of Hormomyces species.","PeriodicalId":73121,"journal":{"name":"Fungal systematics and evolution","volume":"28 1","pages":""},"PeriodicalIF":0.0,"publicationDate":"2021-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"88013398","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Table S1","authors":"Á. Pintos","doi":"10.3114/fuse.2021.07.10_supp1","DOIUrl":"https://doi.org/10.3114/fuse.2021.07.10_supp1","url":null,"abstract":"Table S1. GenBank accession numbers and isolates employed in the phylogenetic analyses. Names in bold represent samples sequenced for the present study.","PeriodicalId":73121,"journal":{"name":"Fungal systematics and evolution","volume":"138 1","pages":""},"PeriodicalIF":0.0,"publicationDate":"2021-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"78029873","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Figs S1-S3 & Tables S1-S2","authors":"C. Walker","doi":"10.3114/fuse.2021.08.14_supp1","DOIUrl":"https://doi.org/10.3114/fuse.2021.08.14_supp1","url":null,"abstract":"Fig. S1. Rhizophagus intraradices: culturing history of the type and successful ex-type culture attempts (ATT 4) and a new isolate (ATT 1102) from the type location established approx. 30 years later. Both pot cultures (PC) and root organ cultures (ROC) are shown with dates of establishment and voucher numbers for samples that yielded specimens for preservation in herbaria. Sun bags are item B7062, Sigma Aldrich (https://www.sigmaaldrich.com). Location of cultures: Forestry Commission Northern Research Station or other localities in UK; Université catholique de Louvain (UCL); Ludwig Maximilian University of Munich (LMU). Gel refers to a small portion of substrate from a parent ROC, with a single spore, several spores, or root fragments (usually with attached mycelium).Fig. S2. Phylogenetic maximum likelihood phylogenetic tree of Rhizophagus species and isolates characterised for the SSU-ITS-LSU rDNA region, with Sclerocystis as outgroup. Bootstrap (BS) values below 60 % and BS values of terminal sister relations are not shown. “Rhizoglomus venetianum” (= R. irregularis) sequences are marked in red, sequence variants characterised in a Rhizophagus irregularis genome project are marked in blue. Sequences of Rhizophagus intraradices cultures derived from the ex-type culture FL 208, including the epitype (voucher W 5719 from MUCL 52327 = ATT 4-83), are shown in green and sequences of the new isolate collected from the type locality (MUCL 49410 = ATT 1102-12) in brown.Table S1. Rhizophagus intraradices: lengths and widths (µm) of extra- and intraradical spores from two strains, ATT 4 and ATT 1102 spores with inferential statistics (number of spores observed (n), minimum value (Min), first quartile of the data (Q1), median, third quartile of data (Q3), maximum value (Max), mean, standard deviation (SD) and % coefficient of variation (CV %)). Table S2. Rhizophagus intraradices: spore colours from two strains (ATT 4 – type and ex-type) and ATT 1102 (new culture from type locality) from pot cultures (PC) and root organ cultures (ROC). Where possible, colours were matched with charts from Royal Botanic Garden Edinburgh, Munsell, or Methuen Handbook of Colour.","PeriodicalId":73121,"journal":{"name":"Fungal systematics and evolution","volume":"1 1","pages":""},"PeriodicalIF":0.0,"publicationDate":"2021-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"90098386","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Figs S1-S3","authors":"E. Karlsen-Ayala","doi":"10.3114/fuse.2021.08.08_supp1","DOIUrl":"https://doi.org/10.3114/fuse.2021.08.08_supp1","url":null,"abstract":"Fig. S1. Maximum likelihood tree based on ITS dataset. Branch support values >75 % and Bayesian posterior probabilities > 0.90 are indicated. Symbols with closed circles represent gasteroid taxa, symbols with half circles represent secotoid taxa, and all other taxa are agaricoid. Limacella glioderma was used as an outgroup.Fig. S2. Maximum likelihood tree based on LSU dataset. Branch support values >75 % and Bayesian posterior probabilities > 0.90 are indicated. Symbols with closed circles represent gasteroid taxa, symbols with half circles represent secotoid taxa, and all other taxa are agaricoid. Limacella glioderma was used as an outgroup. Fig. S3. Maximum likelihood tree based on concatenated LSU, rpb2, and tef1 dataset with ambiguously aligned regions excluded. Branch bootstrap support values >75 % and Bayesian posterior probabilities > 0.90 are indicated. Limacella delicata, Limacella glioderma and Limacella guttata were used as an outgroup.","PeriodicalId":73121,"journal":{"name":"Fungal systematics and evolution","volume":"33 1","pages":""},"PeriodicalIF":0.0,"publicationDate":"2021-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"81157484","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Figs S1-S4","authors":"R. Chang","doi":"10.3114/fuse.2021.08.12_supp1","DOIUrl":"https://doi.org/10.3114/fuse.2021.08.12_supp1","url":null,"abstract":"Fig. S1. Phylogram obtained from ML analyses of the partial BT and EF gene sequences of the O. clavatum species complex. Sequences obtained in this study are printed in bold type. Maximum-likelihood bootstrap support values (1 000 replicates) above 70 % are indicated at the nodes. Bayesian inference posterior probabilities (above 0.9) are indicated by bold lines at the relevant branches. T = ex-type cultures. Fig. S2. Phylogram obtained from ML analyses of the ITS region and the partial BT gene of the O. ips species complex. Sequences obtained in this study are printed in bold type. Maximum-likelihood bootstrap support values (1 000 replicates) above 70 % are indicated at the nodes. The Bayesian inference posterior probabilities (above 0.9) are indicated by bold lines at the relevant branches. T = ex-type cultures. Fig. S3. Phylogram obtained from ML analyses of the ITS region, and the partial BT and CAL gene sequences of the Sporothrix gossypina species complex. Sequences obtained in this study are printed in bold type. Maximum-likelihood bootstrap support values (1 000 replicates) above 70 % are indicated at the nodes. Bayesian inference posterior probabilities (above 0.9) are indicated by bold lines at the relevant branches. T = ex-type cultures. Fig. S4. Phylogram obtained from ML analyses of the ITS region, and the partial BT and EF gene sequences of Endoconidiophra. Sequences obtained in this study are printed in bold type. Maximum-likelihood bootstrap support values (1 000 replicates) above 70 % are indicated at the nodes. Bayesian inference posterior probabilities (above 0.9) are indicated by bold lines at the relevant branches. T = ex-type cultures.","PeriodicalId":73121,"journal":{"name":"Fungal systematics and evolution","volume":"208 ","pages":""},"PeriodicalIF":0.0,"publicationDate":"2021-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"72541864","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"<i>Bolbea parasitica</i> <i>gen. et sp. nov</i>., a cultivable holocarpic parasitoid of the early-diverging <i>Saprolegniomycetes</i>.","authors":"A T Buaya,&nbsp;M Thines","doi":"10.3114/fuse.2020.06.07","DOIUrl":"https://doi.org/10.3114/fuse.2020.06.07","url":null,"abstract":"<p><p>Holocarpic oomycetes convert their entire cytoplasm into zoospores and thus do not form dedicated sporangia or hyphal compartments for asexual reproduction. The majority of holocarpic oomycetes are obligate parasites and parasitoids of a diverse suite of organisms, among them green and red algae, brown seaweeds, diatoms, fungi, oomycetes and invertebrates. Most of them are found among the early diverging oomycetes or the <i>Peronosporomycetes</i>, and some in the early-diverging <i>Saprolegniomycetes</i> (<i>Leptomitales</i>). The obligate parasitism renders it difficult to study some of these organisms. Only a few members of the genus <i>Haliphthoros</i> <i>s. l.</i> have been cultured without their hosts, and of the parasitoid <i>Leptomitales</i>, some transient cultures have been established, which are difficult to maintain. Here, the cultivation of a new holocarpic oomycete genus of the <i>Leptomitales</i>, <i>Bolbea</i>, is presented. <i>Bolbea</i> is parasitic to ostracods, is readily cultivable on malt extract agar, and upon contact with water converts its cytoplasm into zoospores. Its morphology and phylogenetic relationships are reported. Due to the ease of cultivation and the ready triggering of zoospore development, similar to some lagenidiaceous oomycetes, the species could be a promising model to study sporulation processes in detail.</p>","PeriodicalId":73121,"journal":{"name":"Fungal systematics and evolution","volume":"6 ","pages":"129-137"},"PeriodicalIF":0.0,"publicationDate":"2020-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.3114/fuse.2020.06.07","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"38358625","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"A new species of <i>Raffaelea</i> from beetle-infested <i>Leucaena leucocephala</i>.","authors":"M Procter,&nbsp;W J Nel,&nbsp;S Marincowitz,&nbsp;P W Crous,&nbsp;M J Wingfield","doi":"10.3114/fuse.2020.06.16","DOIUrl":"https://doi.org/10.3114/fuse.2020.06.16","url":null,"abstract":"<p><p>Species of <i>Raffaelea</i> (<i>Ophiostomatales</i>: <i>Ascomycota</i>) are obligate symbionts of ambrosia beetles, some of which pose a substantial threat to forest trees. <i>Leucaena leucocephala</i> is a small mimosoid tree species that is considered as an invasive weed in most of its introduced range globally. During a field expedition on the French island of Réunion, dying <i>L. leucocephala</i> trees were observed. Samples were taken from these trees and isolations made from symptomatic wood tissues that included beetle tunnels, but in the absence of the beetles themselves. Multiple isolates of a fungus resembling a <i>Raffaelea</i> species were obtained from the discoloured wood associated with the beetle tunnels. To determine their identity, microscopic examination was performed and DNA sequences for three gene regions (ITS, LSU, <i>TUB</i>) were obtained. Phylogenetic analyses based on these gene regions revealed that the isolates represent a new species of <i>Raffaelea</i>, described here as <i>R. borbonica</i> <i>sp. nov.</i> A pathogenicity test was conducted with the fungus, which was shown to cause lesions on the inoculated seedlings, but with a low level of aggressiveness.</p>","PeriodicalId":73121,"journal":{"name":"Fungal systematics and evolution","volume":"6 ","pages":"305-314"},"PeriodicalIF":0.0,"publicationDate":"2020-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.3114/fuse.2020.06.16","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"38358626","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Taxonomy and phylogeny of cercosporoid ascomycetes on <i>Diospyros</i> spp. with special emphasis on <i>Pseudocercospora</i> spp.","authors":"U Braun,&nbsp;C Nakashima,&nbsp;M Bakhshi,&nbsp;R Zare,&nbsp;H D Shin,&nbsp;R F Alves,&nbsp;M B Sposito","doi":"10.3114/fuse.2020.06.06","DOIUrl":"https://doi.org/10.3114/fuse.2020.06.06","url":null,"abstract":"A worldwide survey of cercosporoid ascomycete species on hosts of the genus Diospyros (persimmon) with key to the species based on characters in vivo is provided. Special emphasis is placed on species of the genus Pseudocercospora, which are in part also phylogenetically analysed, using a multilocus approach. Species of the latter genus proved to be very diverse, with a remarkable degree of cryptic speciation. Seven new species are described (Pseudocercospora diospyri-japonicae, P. diospyriphila, P. ershadii, P. kakiicola, P. kobayashiana, and P. tesselata), and two new names are introduced [P. kakiigena (≡ Cylindrosporium kaki, non Pseudocercospora kaki), and Zasmidium diospyri-hispidae (≡ Passalora diospyri, non Zasmidium diospyri)]. Six taxa are lectotypified (Cercospora atra, C. diospyri, C. diospyri var. ferruginea, C. flexuosa, C. fuliginosa, C. kaki), and Pseudocercospora kaki is epitypified.","PeriodicalId":73121,"journal":{"name":"Fungal systematics and evolution","volume":"6 ","pages":"95-127"},"PeriodicalIF":0.0,"publicationDate":"2020-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.3114/fuse.2020.06.06","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"38358645","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}