Autophagy reportsPub Date : 2023-05-16DOI: 10.1080/27694127.2023.2213560
Haruka Chino, S. Ishii, N. Mizushima, Eisuke Itakura
{"title":"Cargo-interacting regions (CIR) of CCPG1 capture ER luminal cargos for reticulophagy","authors":"Haruka Chino, S. Ishii, N. Mizushima, Eisuke Itakura","doi":"10.1080/27694127.2023.2213560","DOIUrl":"https://doi.org/10.1080/27694127.2023.2213560","url":null,"abstract":"","PeriodicalId":72341,"journal":{"name":"Autophagy reports","volume":" ","pages":""},"PeriodicalIF":0.0,"publicationDate":"2023-05-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"45345919","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Autophagy reportsPub Date : 2023-05-10DOI: 10.1080/27694127.2023.2210946
Pablo Sánchez-Martín, C. Kraft
{"title":"Conserved regulation of autophagosome-lysosome fusion through YKT6 phosphorylation","authors":"Pablo Sánchez-Martín, C. Kraft","doi":"10.1080/27694127.2023.2210946","DOIUrl":"https://doi.org/10.1080/27694127.2023.2210946","url":null,"abstract":"","PeriodicalId":72341,"journal":{"name":"Autophagy reports","volume":" ","pages":""},"PeriodicalIF":0.0,"publicationDate":"2023-05-10","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"45950164","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Autophagy reportsPub Date : 2023-04-10DOI: 10.1080/27694127.2023.2200341
Takeshi Yamamoto, Jun Nakamura, Yoshitsugu Takabatake, Y. Isaka
{"title":"Obesity-related proximal tubulopathy: an emerging threat to kidney health","authors":"Takeshi Yamamoto, Jun Nakamura, Yoshitsugu Takabatake, Y. Isaka","doi":"10.1080/27694127.2023.2200341","DOIUrl":"https://doi.org/10.1080/27694127.2023.2200341","url":null,"abstract":"","PeriodicalId":72341,"journal":{"name":"Autophagy reports","volume":" ","pages":""},"PeriodicalIF":0.0,"publicationDate":"2023-04-10","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"49601166","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Autophagy reportsPub Date : 2023-04-04DOI: 10.1080/27694127.2023.2197637
Yun-Ling He, J. Li, Yan Cao, Haitao Wu, Li-Ying Wu
{"title":"A crosstalk between phosphorylation and ubiquitination of BNIP3 regulates mitophagy under hypoxia","authors":"Yun-Ling He, J. Li, Yan Cao, Haitao Wu, Li-Ying Wu","doi":"10.1080/27694127.2023.2197637","DOIUrl":"https://doi.org/10.1080/27694127.2023.2197637","url":null,"abstract":"","PeriodicalId":72341,"journal":{"name":"Autophagy reports","volume":" ","pages":""},"PeriodicalIF":0.0,"publicationDate":"2023-04-04","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"47922831","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Autophagy reportsPub Date : 2023-03-19eCollection Date: 2023-12-31DOI: 10.1080/27694127.2023.2188523
Vladimir V Rogov, Ioannis P Nezis, Panagiotis Tsapras, Hong Zhang, Yasin Dagdas, Nobuo N Noda, Hitoshi Nakatogawa, Martina Wirth, Stephane Mouilleron, David G McEwan, Christian Behrends, Vojo Deretic, Zvulun Elazar, Sharon A Tooze, Ivan Dikic, Trond Lamark, Terje Johansen
{"title":"Atg8 family proteins, LIR/AIM motifs and other interaction modes.","authors":"Vladimir V Rogov, Ioannis P Nezis, Panagiotis Tsapras, Hong Zhang, Yasin Dagdas, Nobuo N Noda, Hitoshi Nakatogawa, Martina Wirth, Stephane Mouilleron, David G McEwan, Christian Behrends, Vojo Deretic, Zvulun Elazar, Sharon A Tooze, Ivan Dikic, Trond Lamark, Terje Johansen","doi":"10.1080/27694127.2023.2188523","DOIUrl":"10.1080/27694127.2023.2188523","url":null,"abstract":"<p><p>The Atg8 family of ubiquitin-like proteins play pivotal roles in autophagy and other processes involving vesicle fusion and transport where the lysosome/vacuole is the end station. Nuclear roles of Atg8 proteins are also emerging. Here, we review the structural and functional features of Atg8 family proteins and their protein-protein interaction modes in model organisms such as yeast, <i>Arabidopsis, C. elegans</i> and <i>Drosophila</i> to humans. Although varying in number of homologs, from one in yeast to seven in humans, and more than ten in some plants, there is a strong evolutionary conservation of structural features and interaction modes. The most prominent interaction mode is between the LC3 interacting region (LIR), also called Atg8 interacting motif (AIM), binding to the LIR docking site (LDS) in Atg8 homologs. There are variants of these motifs like \"half-LIRs\" and helical LIRs. We discuss details of the binding modes and how selectivity is achieved as well as the role of multivalent LIR-LDS interactions in selective autophagy. A number of LIR-LDS interactions are known to be regulated by phosphorylation. New methods to predict LIR motifs in proteins have emerged that will aid in discovery and analyses. There are also other interaction surfaces than the LDS becoming known where we presently lack detailed structural information, like the N-terminal arm region and the UIM-docking site (UDS). More interaction modes are likely to be discovered in future studies.</p>","PeriodicalId":72341,"journal":{"name":"Autophagy reports","volume":" ","pages":""},"PeriodicalIF":0.0,"publicationDate":"2023-03-19","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7615515/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"49651386","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Autophagy reportsPub Date : 2023-03-19DOI: 10.1080/27694127.2023.2191918
M. Capurro, A. Prashar, Xiaodong Gao, N. Jones
{"title":"Survival of intracellular pathogens in response to mTORC1- or TRPML1-TFEB-induced xenophagy","authors":"M. Capurro, A. Prashar, Xiaodong Gao, N. Jones","doi":"10.1080/27694127.2023.2191918","DOIUrl":"https://doi.org/10.1080/27694127.2023.2191918","url":null,"abstract":"","PeriodicalId":72341,"journal":{"name":"Autophagy reports","volume":" ","pages":""},"PeriodicalIF":0.0,"publicationDate":"2023-03-19","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"43590026","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}