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Optimizing cetacean blow collection methods under controlled conditions: implications for further non-invasive UAV-based sampling of the cetacean respiratory microbiome in the wild. 在受控条件下优化鲸类动物的吹风收集方法：对野生鲸类动物呼吸微生物群的进一步非侵入性无人机采样的影响。
IF 4.4
Animal microbiome Pub Date : 2026-04-03 DOI: 10.1186/s42523-026-00555-8
Elyne Dugény, Luca Ceolotto, Rafaella Franch, Gaia Pesce, Eva Alvarez, Erika Esposti, Sandro Mazzariol, Cinzia Centelleghe
{"title":"Optimizing cetacean blow collection methods under controlled conditions: implications for further non-invasive UAV-based sampling of the cetacean respiratory microbiome in the wild.","authors":"Elyne Dugény, Luca Ceolotto, Rafaella Franch, Gaia Pesce, Eva Alvarez, Erika Esposti, Sandro Mazzariol, Cinzia Centelleghe","doi":"10.1186/s42523-026-00555-8","DOIUrl":"https://doi.org/10.1186/s42523-026-00555-8","url":null,"abstract":"","PeriodicalId":72201,"journal":{"name":"Animal microbiome","volume":" ","pages":""},"PeriodicalIF":4.4,"publicationDate":"2026-04-03","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"147617205","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Impact of differential dietary concentrations of cobalt, manganese and zinc on gastrointestinal microbiome and resistome of lactating dairy cattle. 不同饲粮钴、锰和锌浓度对泌乳奶牛胃肠道微生物组和抵抗组的影响
IF 4.4
Animal microbiome Pub Date : 2026-03-25 DOI: 10.1186/s42523-026-00554-9
Alexandra Langlois, Mélissa Duplessis, Jennifer Ronholm, Antony T Vincent, Dominic Poulin-Laprade, Renée M Petri
{"title":"Impact of differential dietary concentrations of cobalt, manganese and zinc on gastrointestinal microbiome and resistome of lactating dairy cattle.","authors":"Alexandra Langlois, Mélissa Duplessis, Jennifer Ronholm, Antony T Vincent, Dominic Poulin-Laprade, Renée M Petri","doi":"10.1186/s42523-026-00554-9","DOIUrl":"10.1186/s42523-026-00554-9","url":null,"abstract":"","PeriodicalId":72201,"journal":{"name":"Animal microbiome","volume":" ","pages":""},"PeriodicalIF":4.4,"publicationDate":"2026-03-25","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC13137713/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"147517164","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Effects of Ligilactobacillus agilis W70 and dietary protein levels on feed efficiency, nitrogen metabolism, and rumen microbiota of lactating dairy cows. 饲粮蛋白质水平和敏捷乳杆菌W70对泌乳奶牛饲料效率、氮代谢和瘤胃微生物群的影响
IF 4.4
Animal microbiome Pub Date : 2026-03-24 DOI: 10.1186/s42523-026-00548-7
Xiaowei Duan, Lu Ma, Calum Bridson, Zhijie Luo, Stafford Vigors, Dengpan Bu
{"title":"Effects of Ligilactobacillus agilis W70 and dietary protein levels on feed efficiency, nitrogen metabolism, and rumen microbiota of lactating dairy cows.","authors":"Xiaowei Duan, Lu Ma, Calum Bridson, Zhijie Luo, Stafford Vigors, Dengpan Bu","doi":"10.1186/s42523-026-00548-7","DOIUrl":"10.1186/s42523-026-00548-7","url":null,"abstract":"","PeriodicalId":72201,"journal":{"name":"Animal microbiome","volume":" ","pages":""},"PeriodicalIF":4.4,"publicationDate":"2026-03-24","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC13134307/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"147517093","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Metagenomic sequencing reveals the dynamic changes of pig gut fungal composition following the ages and identifies fungal species associated with diarrhea in piglets. 宏基因组测序揭示了猪肠道真菌组成随年龄的动态变化，并确定了与仔猪腹泻相关的真菌种类。
IF 4.4
Animal microbiome Pub Date : 2026-03-24 DOI: 10.1186/s42523-026-00551-y
Guanyue Wei, Min Liu, Lusheng Huang, Congying Chen
{"title":"Metagenomic sequencing reveals the dynamic changes of pig gut fungal composition following the ages and identifies fungal species associated with diarrhea in piglets.","authors":"Guanyue Wei, Min Liu, Lusheng Huang, Congying Chen","doi":"10.1186/s42523-026-00551-y","DOIUrl":"10.1186/s42523-026-00551-y","url":null,"abstract":"","PeriodicalId":72201,"journal":{"name":"Animal microbiome","volume":" ","pages":""},"PeriodicalIF":4.4,"publicationDate":"2026-03-24","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC13137500/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"147517153","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
African carnivore gut bacterial diversity and composition are associated with sample condition but not storage technique. 非洲食肉动物肠道细菌的多样性和组成与样品条件有关，而与储存技术无关。
IF 4.4
Animal microbiome Pub Date : 2026-03-24 DOI: 10.1186/s42523-026-00553-w
Laura E Peirson, Erin A McKenney, Jessica R Patterson, James C Beasley, Stéphanie Périquet-Pearce, Claudine Cloete, Madeline H Melton, Brennan PetersonWood, Rubén Portas, Ortwin Aschenborn, Diana J R Lafferty
{"title":"African carnivore gut bacterial diversity and composition are associated with sample condition but not storage technique.","authors":"Laura E Peirson, Erin A McKenney, Jessica R Patterson, James C Beasley, Stéphanie Périquet-Pearce, Claudine Cloete, Madeline H Melton, Brennan PetersonWood, Rubén Portas, Ortwin Aschenborn, Diana J R Lafferty","doi":"10.1186/s42523-026-00553-w","DOIUrl":"10.1186/s42523-026-00553-w","url":null,"abstract":"<p><p>Non-invasive fecal sampling is essential for molecular wildlife studies such as gut microbiome (GMB) research, yet field conditions often limit preservation options. To test the effects of preservation methods on the results of GMB community composition, we compared gut bacterial communities in paired fecal samples preserved in stabilization tubes and air-dried in paper bags collected from anesthetized African lions (Panthera leo) and spotted hyenas (Crocuta crocuta) in Etosha National Park, Namibia. Additional opportunistic samples from the ground around carnivore feeding sites that varied in moisture content were also analyzed. No differences in alpha or beta diversity were detected between preserved and dried samples, although bacterial beta diversity differed between preserved and opportunistic samples, supported by NMDS ordinations and PERMANOVA results. Core bacterial communities remained consistent across opportunistic sample conditions, indicating that host-associated taxa persist despite environmental exposure supporting the use of opportunistic samples for GMB studies in remote arid settings. However, consistent sampling protocols and future field-based desiccation studies remain critical for comparative analyses. These findings highlight that rapid air-drying offers a reliable, low-cost preservation option that maintains core microbiome patterns, expanding the feasibility of GMB research in remote or resource-limited field contexts where refrigeration and preservatives may be unavailable.</p>","PeriodicalId":72201,"journal":{"name":"Animal microbiome","volume":" ","pages":""},"PeriodicalIF":4.4,"publicationDate":"2026-03-24","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC13134297/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"147517120","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Temporal variability is an inherent feature of the healthy canine microbiome assessed by full-length 16S rRNA gene sequencing. 时间变异性是健康犬微生物组的固有特征，通过全长16S rRNA基因测序进行评估。
IF 4.4
Animal microbiome Pub Date : 2026-03-23 DOI: 10.1186/s42523-026-00546-9
Connie A Rojas, Rebecca Smith, Rebecca Oliver, Guillaume Jospin, Isaac Corral, Holly H Ganz
{"title":"Temporal variability is an inherent feature of the healthy canine microbiome assessed by full-length 16S rRNA gene sequencing.","authors":"Connie A Rojas, Rebecca Smith, Rebecca Oliver, Guillaume Jospin, Isaac Corral, Holly H Ganz","doi":"10.1186/s42523-026-00546-9","DOIUrl":"10.1186/s42523-026-00546-9","url":null,"abstract":"","PeriodicalId":72201,"journal":{"name":"Animal microbiome","volume":" ","pages":""},"PeriodicalIF":4.4,"publicationDate":"2026-03-23","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC13069714/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"147505561","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Rubber seed cake supplementation alters meat quality, intestinal health, and gut microbiota in Hu sheep. 添加橡胶籽饼可改变湖羊肉质、肠道健康和肠道菌群。
IF 4.4
Animal microbiome Pub Date : 2026-03-23 DOI: 10.1186/s42523-026-00556-7
Huwei Zhao, Jinling Hua, Wenwen Lu, Xiaokang Lv, Chao Chen, Yan Liang
{"title":"Rubber seed cake supplementation alters meat quality, intestinal health, and gut microbiota in Hu sheep.","authors":"Huwei Zhao, Jinling Hua, Wenwen Lu, Xiaokang Lv, Chao Chen, Yan Liang","doi":"10.1186/s42523-026-00556-7","DOIUrl":"10.1186/s42523-026-00556-7","url":null,"abstract":"","PeriodicalId":72201,"journal":{"name":"Animal microbiome","volume":" ","pages":""},"PeriodicalIF":4.4,"publicationDate":"2026-03-23","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC13130676/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"147505543","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
A lagging recovery: the delayed restoration of gut microbial diversity in Rhinolophus sinicus post-hibernation. 滞后恢复：冬眠后中国犀牛肠道微生物多样性的延迟恢复。
IF 4.4
Animal microbiome Pub Date : 2026-03-20 DOI: 10.1186/s42523-026-00552-x
Yuting Wang, Wenqing Ling, Linxia Ouyang, Sheng Zhang, Huiqian Zhou, Tao Luo, Shurong Liu, Jiale Tang, Zixian Zhou, Liping Tang, Zhilin Wang, Fuwen Wei, Guangping Huang
{"title":"A lagging recovery: the delayed restoration of gut microbial diversity in Rhinolophus sinicus post-hibernation.","authors":"Yuting Wang, Wenqing Ling, Linxia Ouyang, Sheng Zhang, Huiqian Zhou, Tao Luo, Shurong Liu, Jiale Tang, Zixian Zhou, Liping Tang, Zhilin Wang, Fuwen Wei, Guangping Huang","doi":"10.1186/s42523-026-00552-x","DOIUrl":"10.1186/s42523-026-00552-x","url":null,"abstract":"","PeriodicalId":72201,"journal":{"name":"Animal microbiome","volume":" ","pages":""},"PeriodicalIF":4.4,"publicationDate":"2026-03-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC13126910/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"147492339","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Impact of 1,2-α-L-fucosidase on pig enteric methane production and growth performance. 1,2-α- l -聚焦酶对猪肠道甲烷产量和生长性能的影响
IF 4.4
Animal microbiome Pub Date : 2026-03-19 DOI: 10.1186/s42523-025-00487-9
D Georgaki, N Canibe, M E van der Heide, L Foldager, C H Poulsen, R Mejldal, D Velayudhan, J V Nørgaard, O Højberg
{"title":"Impact of 1,2-α-L-fucosidase on pig enteric methane production and growth performance.","authors":"D Georgaki, N Canibe, M E van der Heide, L Foldager, C H Poulsen, R Mejldal, D Velayudhan, J V Nørgaard, O Højberg","doi":"10.1186/s42523-025-00487-9","DOIUrl":"10.1186/s42523-025-00487-9","url":null,"abstract":"","PeriodicalId":72201,"journal":{"name":"Animal microbiome","volume":"8 1","pages":""},"PeriodicalIF":4.4,"publicationDate":"2026-03-19","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC13001275/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"147488794","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Characterising the gut microbiome of six Australian marsupials reveals captivity constrains microbiome. 表征肠道微生物组的六个澳大利亚有袋动物揭示圈养限制微生物组。
IF 4.4
Animal microbiome Pub Date : 2026-03-19 DOI: 10.1186/s42523-026-00545-w
Angela Russell, Rachele Gore, Jennifer L Wood, Kylie A Robert
{"title":"Characterising the gut microbiome of six Australian marsupials reveals captivity constrains microbiome.","authors":"Angela Russell, Rachele Gore, Jennifer L Wood, Kylie A Robert","doi":"10.1186/s42523-026-00545-w","DOIUrl":"10.1186/s42523-026-00545-w","url":null,"abstract":"","PeriodicalId":72201,"journal":{"name":"Animal microbiome","volume":" ","pages":""},"PeriodicalIF":4.4,"publicationDate":"2026-03-19","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC13123018/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"147488782","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
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